CSPI06G02460 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G02460
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr6: 1853676 .. 1853992 (-)
RNA-Seq Expression	CSPI06G02460
Synteny	CSPI06G02460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTACTTCATCTACATCATGGGAGGCAACAACAGGCAAAAGAAAGCTCACGCATCTTTTTCGATCTTTAGCTTTTTCAAATCTAGAAGGGGTAGAAAAGGAGACCACTGCAACCACAGTGGTTCTTGCCTGGACGAGATGCCGAGATCAGGCAAGGTGTGGCCGAGCGATGAGGACAAAGCTCATCATTGGGTTGCTGAGCCTGGTATTGATAGAAAGGCCAAAGATTACATCGATAGGATCTATCGAAATCGTGTTTTTGAATCCGAGCGCCAAACTGTCACTATATCTCCCAATGGAATCAAATCCAATGTGTAA

mRNA sequence

ATTACTTCATCTACATCATGGGAGGCAACAACAGGCAAAAGAAAGCTCACGCATCTTTTTCGATCTTTAGCTTTTTCAAATCTAGAAGGGGTAGAAAAGGAGACCACTGCAACCACAGTGGTTCTTGCCTGGACGAGATGCCGAGATCAGGCAAGGTGTGGCCGAGCGATGAGGACAAAGCTCATCATTGGGTTGCTGAGCCTGGTATTGATAGAAAGGCCAAAGATTACATCGATAGGATCTATCGAAATCGTGTTTTTGAATCCGAGCGCCAAACTGTCACTATATCTCCCAATGGAATCAAATCCAATGTGTAA

Coding sequence (CDS)

ATGGGAGGCAACAACAGGCAAAAGAAAGCTCACGCATCTTTTTCGATCTTTAGCTTTTTCAAATCTAGAAGGGGTAGAAAAGGAGACCACTGCAACCACAGTGGTTCTTGCCTGGACGAGATGCCGAGATCAGGCAAGGTGTGGCCGAGCGATGAGGACAAAGCTCATCATTGGGTTGCTGAGCCTGGTATTGATAGAAAGGCCAAAGATTACATCGATAGGATCTATCGAAATCGTGTTTTTGAATCCGAGCGCCAAACTGTCACTATATCTCCCAATGGAATCAAATCCAATGTGTAA

Protein sequence

MGGNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVAEPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGIKSNV*

Homology

[Close]

BLAST of CSPI06G02460 vs. ExPASy TrEMBL
Match: A0A0A0KAK6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 1.7e-51
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MGGNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60
           MGGNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA
Sbjct: 1   MGGNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61  EPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGIKSNV 100
           EPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGIKSNV
Sbjct: 61  EPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGIKSNV 99

[Close]

BLAST of CSPI06G02460 vs. ExPASy TrEMBL
Match: A0A5A7SWT9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00350 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 2.7e-49
Identity = 94/99 (94.95%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 1   MGGNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60
           MGGNNRQKK+H+SFSIFSFFKSRRGRKGD+CNHSGSCLDEMPRSGKVWPSDEDKAHHWVA
Sbjct: 1   MGGNNRQKKSHSSFSIFSFFKSRRGRKGDNCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61  EPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGIKSNV 100
           EPGIDRKAKDYIDRIYRNRVFESERQT+TISPNG KSNV
Sbjct: 61  EPGIDRKAKDYIDRIYRNRVFESERQTITISPNGTKSNV 99

[Close]

BLAST of CSPI06G02460 vs. ExPASy TrEMBL
Match: A0A0A0KBW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.3e-43
Identity = 87/97 (89.69%), Postives = 91/97 (93.81%), Query Frame = 0


Query: 3   GNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVAEP 62
           G NRQKK+H+SFSIFSFFKSRRGRKGDH +H G+ LDEMPRS KVWPSDEDKAHHWVAEP
Sbjct: 2   GGNRQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWLDEMPRSNKVWPSDEDKAHHWVAEP 61

Query: 63  GIDRKAKDYIDRIYRNRVFESERQTVTISPNGIKSNV 100
           GIDRKAKDYIDRIYRNRVFESERQTVTISPNG KSNV
Sbjct: 62  GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]

BLAST of CSPI06G02460 vs. ExPASy TrEMBL
Match: A0A0A0K7Y2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 2.4e-42
Identity = 84/97 (86.60%), Postives = 90/97 (92.78%), Query Frame = 0


Query: 3   GNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVAEP 62
           G NRQKK+H+SFSIFSFFKS+RGRKGDH +H G+  DEMPRS KVWPSDEDKAHHW+AEP
Sbjct: 2   GGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEP 61

Query: 63  GIDRKAKDYIDRIYRNRVFESERQTVTISPNGIKSNV 100
           GIDRKAKDYIDRIYRNRVFESERQTVTISPNG KSNV
Sbjct: 62  GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]

BLAST of CSPI06G02460 vs. ExPASy TrEMBL
Match: A0A0A0K8W0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G016905 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 3.1e-34
Identity = 74/99 (74.75%), Postives = 85/99 (85.86%), Query Frame = 0


Query: 1   MGGNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60
           MGG++RQKK H+SFSIFSFFKS+RGRKGD   H G+  +++P S KVWPSDEDK + WVA
Sbjct: 1   MGGSHRQKKTHSSFSIFSFFKSKRGRKGDVYEH-GTNWEDVPSSSKVWPSDEDKGYRWVA 60

Query: 61  EPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGIKSNV 100
           EPGIDRKAKDYIDRIY+NRVFE+ERQTVTI PNG  SNV
Sbjct: 61  EPGIDRKAKDYIDRIYKNRVFETERQTVTIHPNGPNSNV 98

[Close]

BLAST of CSPI06G02460 vs. NCBI nr
Match: KGN45869.1 (hypothetical protein Csa_005516 [Cucumis sativus])

HSP 1 Score: 211.5 bits (537), Expect = 3.4e-51
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MGGNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60
           MGGNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA
Sbjct: 1   MGGNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61  EPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGIKSNV 100
           EPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGIKSNV
Sbjct: 61  EPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGIKSNV 99

[Close]

BLAST of CSPI06G02460 vs. NCBI nr
Match: KAA0035003.1 (hypothetical protein E6C27_scaffold57G00440 [Cucumis melo var. makuwa] >TYK02343.1 hypothetical protein E5676_scaffold155G00350 [Cucumis melo var. makuwa])

HSP 1 Score: 204.1 bits (518), Expect = 5.5e-49
Identity = 94/99 (94.95%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 1   MGGNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60
           MGGNNRQKK+H+SFSIFSFFKSRRGRKGD+CNHSGSCLDEMPRSGKVWPSDEDKAHHWVA
Sbjct: 1   MGGNNRQKKSHSSFSIFSFFKSRRGRKGDNCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61  EPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGIKSNV 100
           EPGIDRKAKDYIDRIYRNRVFESERQT+TISPNG KSNV
Sbjct: 61  EPGIDRKAKDYIDRIYRNRVFESERQTITISPNGTKSNV 99

[Close]

BLAST of CSPI06G02460 vs. NCBI nr
Match: KGN45870.1 (hypothetical protein Csa_004960 [Cucumis sativus])

HSP 1 Score: 181.0 bits (458), Expect = 5.0e-42
Identity = 84/97 (86.60%), Postives = 90/97 (92.78%), Query Frame = 0


Query: 3   GNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVAEP 62
           G NRQKK+H+SFSIFSFFKS+RGRKGDH +H G+  DEMPRS KVWPSDEDKAHHW+AEP
Sbjct: 2   GGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEP 61

Query: 63  GIDRKAKDYIDRIYRNRVFESERQTVTISPNGIKSNV 100
           GIDRKAKDYIDRIYRNRVFESERQTVTISPNG KSNV
Sbjct: 62  GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]

BLAST of CSPI06G02460 vs. NCBI nr
Match: KAG6592306.1 (hypothetical protein SDJN03_14652, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 174.1 bits (440), Expect = 6.1e-40
Identity = 82/98 (83.67%), Postives = 88/98 (89.80%), Query Frame = 0


Query: 1  MGGNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60
          MGGNNR KKAH+SFSIF+FFKS++ RK DHC+HS SC DEMPRSGKVWPSDEDK H WVA
Sbjct: 1  MGGNNRSKKAHSSFSIFNFFKSKKSRKEDHCDHS-SCWDEMPRSGKVWPSDEDKTHRWVA 60

Query: 61 EPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGIKSN 99
          EPGIDRKAKDYIDRIYRNRVFESERQTVT+  NGIK N
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTVTLPANGIKLN 97

[Close]

BLAST of CSPI06G02460 vs. NCBI nr
Match: KAG6592316.1 (hypothetical protein SDJN03_14662, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 166.8 bits (421), Expect = 9.7e-38
Identity = 79/96 (82.29%), Postives = 84/96 (87.50%), Query Frame = 0


Query: 1  MGGNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60
          MGGNNR KKAH+SFSIF+FFK RRGRK DHC+HSG C DEMPRS KVWPSDEDK H WVA
Sbjct: 1  MGGNNRSKKAHSSFSIFNFFKFRRGRKEDHCDHSG-CWDEMPRSNKVWPSDEDKMHRWVA 60

Query: 61 EPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGIK 97
          EPGIDRKAKDYIDRIYRNRV ESERQTVT+  +G K
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVLESERQTVTLPASGTK 95

[Close]

BLAST of CSPI06G02460 vs. TAIR 10
Match: AT3G05858.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 71.6 bits (174), Expect = 4.0e-13
Identity = 44/91 (48.35%), Postives = 57/91 (62.64%), Query Frame = 0


Query: 1  MGGNNRQKKAHAS--FSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHW 60
          MGG NR   +H+S  FS+FSFFK+RR     H   +    D+   + K   SDEDK  +W
Sbjct: 1  MGGKNR---SHSSKRFSLFSFFKTRR----SHRVEADGSWDDFGYTRKAMASDEDK-RYW 60

Query: 61 VAEPGIDRKAKDYIDRIYRNRVFESERQTVT 90
          VAEPGIDRKA  +I + +  RV ESERQT++
Sbjct: 61 VAEPGIDRKASAFIAKFHATRVSESERQTLS 83

[Close]

BLAST of CSPI06G02460 vs. TAIR 10
Match: AT5G26620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05858.1); Has 48 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 59.3 bits (142), Expect = 2.0e-09
Identity = 30/63 (47.62%), Postives = 41/63 (65.08%), Query Frame = 0


Query: 26 RKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVAEPGIDRKAKDYIDRIYRNRVFESER 85
          R   H   + +  D++  + K W SDEDK  +WVAEPGIDRKA  +I + + +RV ESER
Sbjct: 5  RSSHHRVEADASWDDVIYTRKAWASDEDK-RYWVAEPGIDRKASAFIAKFHASRVSESER 64

Query: 86 QTV 89
          QT+
Sbjct: 65 QTL 66

The following BLAST results are available for this feature:

BLAST of CSPI06G02460 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI06G02460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAK6	1.7e-51	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1	[more]
A0A5A7SWT9	2.7e-49	94.95	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KBW1	1.3e-43	89.69	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1	[more]
A0A0A0K7Y2	2.4e-42	86.60	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1	[more]
A0A0A0K8W0	3.1e-34	74.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G016905 PE=4 SV=1	[more]

BLAST of CSPI06G02460 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN45869.1	3.4e-51	100.00	hypothetical protein Csa_005516 [Cucumis sativus]	[more]
KAA0035003.1	5.5e-49	94.95	hypothetical protein E6C27_scaffold57G00440 [Cucumis melo var. makuwa] >TYK02343...	[more]
KGN45870.1	5.0e-42	86.60	hypothetical protein Csa_004960 [Cucumis sativus]	[more]
KAG6592306.1	6.1e-40	83.67	hypothetical protein SDJN03_14652, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6592316.1	9.7e-38	82.29	hypothetical protein SDJN03_14662, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CSPI06G02460 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05858.1	4.0e-13	48.35	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G26620.1	2.0e-09	47.62	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..50
None	No IPR available	PANTHER	PTHR33511	OS06G0632400 PROTEIN	coord: 1..89
None	No IPR available	PANTHER	PTHR33511:SF17	RIBOSOMAL PROTEIN S12	coord: 1..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G02460.1	CSPI06G02460.1	mRNA