CSPI06G02400 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G02400
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Prolamin_like domain-containing protein
Location	Chr6: 1803787 .. 1804419 (+)
RNA-Seq Expression	CSPI06G02400
Synteny	CSPI06G02400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACATAACTTCCCTAAAAGCCTACATTTTATTATTACACTAAAAATATCTATACATATTCGCTAATAAACTCAAAATAAAAGTGCACTATTAAACAAATCGAATTCTTGTGTGTTTCAACAATGACTTCCATTGCTTTCAAGCTCTTCTTTCTCGTTTCTTTGCTAGCTCTTGTTCTTCCTACCTCTATGGCTATGAATGGCAGTAGCATGGCGCTGAACGCTACCACGACGATGAACTGCTTCAACCCTTTGCTTCAATCGTGTAGGAACGAAATACTGACGTTCATTACAAATAACGGTTTGGTTGTTATCCGTTCAGCTTGTTGCCAAGCAATTCTAAATTTTCGTCGTGAATGTTTATCTGAATTTCTTAGTTCACTTGGAATTACTGTCCAAGACTTCCATATTCTTGAAACTTATTGCAAATTGATAGCAAATTTTCCACCTTCTAATTAAGTTATCACCGTGATCTTTTTCCTTAACTCCATTAGTTTTGTCTTATGGAGGTTCCTAAGTCCAACGTTTGTTCAAGGCTAAAATGCAATAAATAAAGTAAAGCCTTGCTGTTTCTTTTGGTTGTAAGGTTAATTACTTTAAACTAATAAATAAACAATCACTTGTTTGGAAATTTGG

mRNA sequence

ACATAACTTCCCTAAAAGCCTACATTTTATTATTACACTAAAAATATCTATACATATTCGCTAATAAACTCAAAATAAAAGTGCACTATTAAACAAATCGAATTCTTGTGTGTTTCAACAATGACTTCCATTGCTTTCAAGCTCTTCTTTCTCGTTTCTTTGCTAGCTCTTGTTCTTCCTACCTCTATGGCTATGAATGGCAGTAGCATGGCGCTGAACGCTACCACGACGATGAACTGCTTCAACCCTTTGCTTCAATCGTGTAGGAACGAAATACTGACGTTCATTACAAATAACGGTTTGGTTGTTATCCGTTCAGCTTGTTGCCAAGCAATTCTAAATTTTCGTCGTGAATGTTTATCTGAATTTCTTAGTTCACTTGGAATTACTGTCCAAGACTTCCATATTCTTGAAACTTATTGCAAATTGATAGCAAATTTTCCACCTTCTAATTAAGTTATCACCGTGATCTTTTTCCTTAACTCCATTAGTTTTGTCTTATGGAGGTTCCTAAGTCCAACGTTTGTTCAAGGCTAAAATGCAATAAATAAAGTAAAGCCTTGCTGTTTCTTTTGGTTGTAAGGTTAATTACTTTAAACTAATAAATAAACAATCACTTGTTTGGAAATTTGG

Coding sequence (CDS)

ATGACTTCCATTGCTTTCAAGCTCTTCTTTCTCGTTTCTTTGCTAGCTCTTGTTCTTCCTACCTCTATGGCTATGAATGGCAGTAGCATGGCGCTGAACGCTACCACGACGATGAACTGCTTCAACCCTTTGCTTCAATCGTGTAGGAACGAAATACTGACGTTCATTACAAATAACGGTTTGGTTGTTATCCGTTCAGCTTGTTGCCAAGCAATTCTAAATTTTCGTCGTGAATGTTTATCTGAATTTCTTAGTTCACTTGGAATTACTGTCCAAGACTTCCATATTCTTGAAACTTATTGCAAATTGATAGCAAATTTTCCACCTTCTAATTAA

Protein sequence

MTSIAFKLFFLVSLLALVLPTSMAMNGSSMALNATTTMNCFNPLLQSCRNEILTFITNNGLVVIRSACCQAILNFRRECLSEFLSSLGITVQDFHILETYCKLIANFPPSN*

Homology

[Close]

BLAST of CSPI06G02400 vs. ExPASy TrEMBL
Match: A0A0A0KDK2 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G014810 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.2e-52
Identity = 110/111 (99.10%), Postives = 110/111 (99.10%), Query Frame = 0


Query: 1   MTSIAFKLFFLVSLLALVLPTSMAMNGSSMALNATTTMNCFNPLLQSCRNEILTFITNNG 60
           M SIAFKLFFLVSLLALVLPTSMAMNGSSMALNATTTMNCFNPLLQSCRNEILTFITNNG
Sbjct: 1   MASIAFKLFFLVSLLALVLPTSMAMNGSSMALNATTTMNCFNPLLQSCRNEILTFITNNG 60

Query: 61  LVVIRSACCQAILNFRRECLSEFLSSLGITVQDFHILETYCKLIANFPPSN 112
           LVVIRSACCQAILNFRRECLSEFLSSLGITVQDFHILETYCKLIANFPPSN
Sbjct: 61  LVVIRSACCQAILNFRRECLSEFLSSLGITVQDFHILETYCKLIANFPPSN 111

[Close]

BLAST of CSPI06G02400 vs. ExPASy TrEMBL
Match: A0A5D3BT50 (Egg cell-secreted protein 1.2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00520 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 2.8e-47
Identity = 99/110 (90.00%), Postives = 105/110 (95.45%), Query Frame = 0


Query: 1   MTSIAFKLFFLVSLLALVLPTSMAMNGSSMALNATTTMNCFNPLLQSCRNEILTFITNNG 60
           M SIAFKLFFL+SLL LVLPTSMA+NG SMALNATTTMNCFNPLLQSCRNEI+TFITNNG
Sbjct: 1   MASIAFKLFFLISLLVLVLPTSMALNGGSMALNATTTMNCFNPLLQSCRNEIVTFITNNG 60

Query: 61  LVVIRSACCQAILNFRRECLSEFLSSLGITVQDFHILETYCKLIANFPPS 111
           LVVIRSACCQAILNFRR+CLSEFL+SLGIT+QDFHILETYCKLIA  PPS
Sbjct: 61  LVVIRSACCQAILNFRRDCLSEFLTSLGITLQDFHILETYCKLIAKVPPS 110

[Close]

BLAST of CSPI06G02400 vs. ExPASy TrEMBL
Match: A0A2P5EDA6 (Prolamin-like domain containing protein OS=Trema orientale OX=63057 GN=TorRG33x02_206840 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.4e-05
Identity = 31/74 (41.89%), Postives = 43/74 (58.11%), Query Frame = 0


Query: 38  MNCFNPLLQ--SCRNEILTFITNNGLVVIRSACCQAILNFRRECLSEFLSSLGITVQDFH 97
           + C+  LL+  SC NEI+ F   NG   I + CC+A++   R C    L+SLG TVQ+  
Sbjct: 57  VECWTALLELKSCSNEIVLFFL-NGQTDIGNDCCRAVVFIARNCWPAMLTSLGFTVQEGD 116

Query: 98  ILETYCKLIANFPP 110
           IL+ YC  +A  PP
Sbjct: 117 ILQGYCDAVAAAPP 129

[Close]

BLAST of CSPI06G02400 vs. ExPASy TrEMBL
Match: A0A2P5CI82 (Prolamin-like domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_150540 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 5.9e-05
Identity = 31/74 (41.89%), Postives = 43/74 (58.11%), Query Frame = 0


Query: 38  MNCFNPLLQ--SCRNEILTFITNNGLVVIRSACCQAILNFRRECLSEFLSSLGITVQDFH 97
           + C+  LL+  SC NEI+ F   NG   I + CC+A++   R C    L+SLG TVQ+  
Sbjct: 57  VECWTALLELKSCLNEIVLFFL-NGQTDIGNDCCRAVVFIARNCWPAMLTSLGFTVQEGD 116

Query: 98  ILETYCKLIANFPP 110
           IL+ YC  +A  PP
Sbjct: 117 ILQGYCDAVAVAPP 129

[Close]

BLAST of CSPI06G02400 vs. ExPASy TrEMBL
Match: A0A1R3HJB2 (Prolamin_like domain-containing protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_18914 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 7.7e-05
Identity = 42/121 (34.71%), Postives = 59/121 (48.76%), Query Frame = 0


Query: 4   IAFKLFFLVSLLALV-------LPTSMAMNGSSMALNATTTMN-----CFNPL--LQSCR 63
           I F  F L +LL L         PTS   + +S++L A   ++     C++ L  LQSC 
Sbjct: 7   IIFLAFLLTTLLFLANARPMDPNPTSSRRSSTSLSLVARLKLDEEPTGCWDSLIELQSCT 66

Query: 64  NEILTFITNNGLVVIRSACCQAILNFRRECLSEFLSSLGITVQDFHILETYCKLIANFPP 111
            EI+ F   NG   +  +CCQAI      C    + +LG T ++ H+LE YC    N PP
Sbjct: 67  GEIIMFFL-NGETELGHSCCQAIRTISNHCWPSMIGALGFTTEETHVLEGYCDHEQNSPP 126

[Close]

BLAST of CSPI06G02400 vs. NCBI nr
Match: KGN45861.1 (hypothetical protein Csa_005369 [Cucumis sativus])

HSP 1 Score: 214.5 bits (545), Expect = 4.5e-52
Identity = 110/111 (99.10%), Postives = 110/111 (99.10%), Query Frame = 0


Query: 1   MTSIAFKLFFLVSLLALVLPTSMAMNGSSMALNATTTMNCFNPLLQSCRNEILTFITNNG 60
           M SIAFKLFFLVSLLALVLPTSMAMNGSSMALNATTTMNCFNPLLQSCRNEILTFITNNG
Sbjct: 1   MASIAFKLFFLVSLLALVLPTSMAMNGSSMALNATTTMNCFNPLLQSCRNEILTFITNNG 60

Query: 61  LVVIRSACCQAILNFRRECLSEFLSSLGITVQDFHILETYCKLIANFPPSN 112
           LVVIRSACCQAILNFRRECLSEFLSSLGITVQDFHILETYCKLIANFPPSN
Sbjct: 61  LVVIRSACCQAILNFRRECLSEFLSSLGITVQDFHILETYCKLIANFPPSN 111

[Close]

BLAST of CSPI06G02400 vs. NCBI nr
Match: KAA0035017.1 (egg cell-secreted protein 1.2-like [Cucumis melo var. makuwa] >TYK02355.1 egg cell-secreted protein 1.2-like [Cucumis melo var. makuwa])

HSP 1 Score: 197.6 bits (501), Expect = 5.7e-47
Identity = 99/110 (90.00%), Postives = 105/110 (95.45%), Query Frame = 0


Query: 1   MTSIAFKLFFLVSLLALVLPTSMAMNGSSMALNATTTMNCFNPLLQSCRNEILTFITNNG 60
           M SIAFKLFFL+SLL LVLPTSMA+NG SMALNATTTMNCFNPLLQSCRNEI+TFITNNG
Sbjct: 1   MASIAFKLFFLISLLVLVLPTSMALNGGSMALNATTTMNCFNPLLQSCRNEIVTFITNNG 60

Query: 61  LVVIRSACCQAILNFRRECLSEFLSSLGITVQDFHILETYCKLIANFPPS 111
           LVVIRSACCQAILNFRR+CLSEFL+SLGIT+QDFHILETYCKLIA  PPS
Sbjct: 61  LVVIRSACCQAILNFRRDCLSEFLTSLGITLQDFHILETYCKLIAKVPPS 110

[Close]

BLAST of CSPI06G02400 vs. NCBI nr
Match: PON83529.1 (Prolamin-like domain containing protein [Trema orientale])

HSP 1 Score: 57.8 bits (138), Expect = 7.1e-05
Identity = 31/74 (41.89%), Postives = 43/74 (58.11%), Query Frame = 0


Query: 38  MNCFNPLLQ--SCRNEILTFITNNGLVVIRSACCQAILNFRRECLSEFLSSLGITVQDFH 97
           + C+  LL+  SC NEI+ F   NG   I + CC+A++   R C    L+SLG TVQ+  
Sbjct: 57  VECWTALLELKSCSNEIVLFFL-NGQTDIGNDCCRAVVFIARNCWPAMLTSLGFTVQEGD 116

Query: 98  ILETYCKLIANFPP 110
           IL+ YC  +A  PP
Sbjct: 117 ILQGYCDAVAAAPP 129

[Close]

BLAST of CSPI06G02400 vs. NCBI nr
Match: PON60757.1 (Prolamin-like domain containing protein [Parasponia andersonii])

HSP 1 Score: 57.0 bits (136), Expect = 1.2e-04
Identity = 31/74 (41.89%), Postives = 43/74 (58.11%), Query Frame = 0


Query: 38  MNCFNPLLQ--SCRNEILTFITNNGLVVIRSACCQAILNFRRECLSEFLSSLGITVQDFH 97
           + C+  LL+  SC NEI+ F   NG   I + CC+A++   R C    L+SLG TVQ+  
Sbjct: 57  VECWTALLELKSCLNEIVLFFL-NGQTDIGNDCCRAVVFIARNCWPAMLTSLGFTVQEGD 116

Query: 98  ILETYCKLIANFPP 110
           IL+ YC  +A  PP
Sbjct: 117 ILQGYCDAVAVAPP 129

[Close]

BLAST of CSPI06G02400 vs. NCBI nr
Match: XP_030461477.1 (egg cell-secreted protein 1.1-like [Syzygium oleosum])

HSP 1 Score: 57.0 bits (136), Expect = 1.2e-04
Identity = 34/92 (36.96%), Postives = 47/92 (51.09%), Query Frame = 0


Query: 20  PTSMAMNGSSMALNATTTMNCFNPL--LQSCRNEILTFITNNGLVVIRSACCQAILNFRR 79
           P S+A     +A N + + NC+  +  LQ+C  E++ F   NG   +  +CCQAI     
Sbjct: 34  PASLAAR-LKVAENGSDSSNCWESMFQLQACTGEVIMFFL-NGETYLGPSCCQAIRTIEH 93

Query: 80  ECLSEFLSSLGITVQDFHILETYCKLIANFPP 110
           EC    LSSLG T ++  ILE YC   A   P
Sbjct: 94  ECWPNLLSSLGYTTEEGDILEGYCDAAATLHP 123

The following BLAST results are available for this feature:

BLAST of CSPI06G02400 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI06G02400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDK2	2.2e-52	99.10	Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G0148...	[more]
A0A5D3BT50	2.8e-47	90.00	Egg cell-secreted protein 1.2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A2P5EDA6	3.4e-05	41.89	Prolamin-like domain containing protein OS=Trema orientale OX=63057 GN=TorRG33x0...	[more]
A0A2P5CI82	5.9e-05	41.89	Prolamin-like domain containing protein OS=Parasponia andersonii OX=3476 GN=PanW...	[more]
A0A1R3HJB2	7.7e-05	34.71	Prolamin_like domain-containing protein OS=Corchorus capsularis OX=210143 GN=CCA...	[more]

BLAST of CSPI06G02400 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN45861.1	4.5e-52	99.10	hypothetical protein Csa_005369 [Cucumis sativus]	[more]
KAA0035017.1	5.7e-47	90.00	egg cell-secreted protein 1.2-like [Cucumis melo var. makuwa] >TYK02355.1 egg ce...	[more]
PON83529.1	7.1e-05	41.89	Prolamin-like domain containing protein [Trema orientale]	[more]
PON60757.1	1.2e-04	41.89	Prolamin-like domain containing protein [Parasponia andersonii]	[more]
XP_030461477.1	1.2e-04	36.96	egg cell-secreted protein 1.1-like [Syzygium oleosum]	[more]

BLAST of CSPI06G02400 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008502	Prolamin-like domain	PFAM	PF05617	Prolamin_like	coord: 39..101 e-value: 6.0E-11 score: 42.4
IPR044711	Egg cell-secreted protein 1.1/1.5	PANTHER	PTHR35293	EGG CELL-SECRETED PROTEIN 1.5	coord: 19..110
None	No IPR available	PANTHER	PTHR35293:SF7	EGG CELL-SECRETED PROTEIN 1.5	coord: 19..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G02400.1	CSPI06G02400.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009567	double fertilization forming a zygote and endosperm
cellular_component	GO:0110165	cellular anatomical entity