CSPI06G02350 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G02350
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	ATP-dependent RNA helicase, putative
Location	Chr6: 1749298 .. 1749735 (+)
RNA-Seq Expression	CSPI06G02350
Synteny	CSPI06G02350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGCTTTTATTAATTTTCAGGGAAGCACTGTTAGATTCTTATCTTTCTAGATATTCAGTTATTATTGTTGATGAAGCTCATGAAAGAACTGTTGATACTGATGTATTGCTAGGGTATTTGAAAAGAGTGCAGAAAGCAAGATCTAAATCTTTAACTGAATCTTCTAATGATCTGAACACAAATGATAATGGCTTGACGTTAGAAAATAGAAATAGCAGTGAATATGCCTCTTCCTTAAAGAGATGTCAAGGAAGGAAACTACCTCCCCTGAAGTTAATTATCATGTCAGCCAGCTTAAATGCACCCCTTTTCTCTGAGTTTTCTGGTGGAGCAAAGGTGTTCCATGTCCATGGGCGTCAGTATCCTGTAGCTATATTTTATACCCGCCAGCCCATACTAGATTACATAGAGGGTACTCTTATTACTATATTTTAG

mRNA sequence

ATGTCGCTTTTATTAATTTTCAGGGAAGCACTGTTAGATTCTTATCTTTCTAGATATTCAGTTATTATTGTTGATGAAGCTCATGAAAGAACTGTTGATACTGATGTATTGCTAGGGTATTTGAAAAGAGTGCAGAAAGCAAGATCTAAATCTTTAACTGAATCTTCTAATGATCTGAACACAAATGATAATGGCTTGACGTTAGAAAATAGAAATAGCAGTGAATATGCCTCTTCCTTAAAGAGATGTCAAGGAAGGAAACTACCTCCCCTGAAGTTAATTATCATGTCAGCCAGCTTAAATGCACCCCTTTTCTCTGAGTTTTCTGGTGGAGCAAAGGTGTTCCATGTCCATGGGCGTCAGTATCCTGTAGCTATATTTTATACCCGCCAGCCCATACTAGATTACATAGAGGGTACTCTTATTACTATATTTTAG

Coding sequence (CDS)

ATGTCGCTTTTATTAATTTTCAGGGAAGCACTGTTAGATTCTTATCTTTCTAGATATTCAGTTATTATTGTTGATGAAGCTCATGAAAGAACTGTTGATACTGATGTATTGCTAGGGTATTTGAAAAGAGTGCAGAAAGCAAGATCTAAATCTTTAACTGAATCTTCTAATGATCTGAACACAAATGATAATGGCTTGACGTTAGAAAATAGAAATAGCAGTGAATATGCCTCTTCCTTAAAGAGATGTCAAGGAAGGAAACTACCTCCCCTGAAGTTAATTATCATGTCAGCCAGCTTAAATGCACCCCTTTTCTCTGAGTTTTCTGGTGGAGCAAAGGTGTTCCATGTCCATGGGCGTCAGTATCCTGTAGCTATATTTTATACCCGCCAGCCCATACTAGATTACATAGAGGGTACTCTTATTACTATATTTTAG

Protein sequence

MSLLLIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDNGLTLENRNSSEYASSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYPVAIFYTRQPILDYIEGTLITIF*

Homology

[Close]

BLAST of CSPI06G02350 vs. ExPASy Swiss-Prot
Match: F4IE66 (Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 OS=Arabidopsis thaliana OX=3702 GN=RID1 PE=1 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 9.9e-34
Identity = 80/142 (56.34%), Postives = 101/142 (71.13%), Query Frame = 0


Query: 5   LIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLN-TND 64
           L+ REALLD +LSRYSVIIVDEAH+R+V TDVLL  LK++Q+ RS+ ++E +   N  + 
Sbjct: 142 LLLREALLDPHLSRYSVIIVDEAHDRSVHTDVLLALLKKIQRTRSQPVSEKTEFGNVASQ 201

Query: 65  NGLTLENRNSSEYASSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYP 124
              T  + N  +    LK  QGRKL PLKLIIMSASL+A +FSE+ GGAK  HV GRQ+P
Sbjct: 202 VQTTTRDANGPQQNGVLKGYQGRKLSPLKLIIMSASLDARVFSEYFGGAKAVHVQGRQFP 261

Query: 125 VAIFYTRQPILDYIEGTLITIF 146
           V I YT  P  DY++ TL+TIF
Sbjct: 262 VDILYTVHPESDYVDATLVTIF 283

[Close]

BLAST of CSPI06G02350 vs. ExPASy Swiss-Prot
Match: Q9H6R0 (ATP-dependent RNA helicase DHX33 OS=Homo sapiens OX=9606 GN=DHX33 PE=1 SV=2)

HSP 1 Score: 97.1 bits (240), Expect = 1.8e-19
Identity = 53/141 (37.59%), Postives = 79/141 (56.03%), Query Frame = 0


Query: 5   LIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDN 64
           ++ REA+ DS L +YS +I+DEAHERT+ TDVL G +K  QK R +              
Sbjct: 174 MLLREAISDSLLRKYSCVILDEAHERTIHTDVLFGVVKAAQKRRKEL------------- 233

Query: 65  GLTLENRNSSEYASSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYPV 124
                                 KL PLK+I+MSA+++  LFS++  GA V ++ GRQ+P+
Sbjct: 234 ---------------------GKL-PLKVIVMSATMDVDLFSQYFNGAPVLYLEGRQHPI 279

Query: 125 AIFYTRQPILDYIEGTLITIF 146
            +FYT+QP  DY+   L+++F
Sbjct: 294 QVFYTKQPQNDYLHAALVSVF 279

[Close]

BLAST of CSPI06G02350 vs. ExPASy Swiss-Prot
Match: Q80VY9 (ATP-dependent RNA helicase DHX33 OS=Mus musculus OX=10090 GN=Dhx33 PE=1 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 9.0e-19
Identity = 53/141 (37.59%), Postives = 78/141 (55.32%), Query Frame = 0


Query: 5   LIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDN 64
           ++ REA+ DS L +YS +I+DEAHERT+ TDVL G +K  QK R +              
Sbjct: 165 MLLREAISDSLLRKYSCVILDEAHERTIHTDVLFGVVKTAQKRRKEL------------- 224

Query: 65  GLTLENRNSSEYASSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYPV 124
                                 KL PLK+I+MSA+++  LFS++   A V ++ GRQ+P+
Sbjct: 225 ---------------------GKL-PLKVIVMSATMDVDLFSQYFNRAPVLYLEGRQHPI 270

Query: 125 AIFYTRQPILDYIEGTLITIF 146
            IFYT+QP  DY+   L+++F
Sbjct: 285 QIFYTKQPQQDYLHAALVSVF 270

[Close]

BLAST of CSPI06G02350 vs. ExPASy Swiss-Prot
Match: Q03319 (Probable ATP-dependent RNA helicase prh1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=prh1 PE=3 SV=2)

HSP 1 Score: 91.3 bits (225), Expect = 9.9e-18
Identity = 54/141 (38.30%), Postives = 75/141 (53.19%), Query Frame = 0


Query: 5   LIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDN 64
           ++ RE + D  LS+Y  +I+DEAHERT+ TD+LLG++K++ K R                
Sbjct: 196 MLLRELINDPILSQYHTLILDEAHERTLMTDMLLGFVKKIIKKR---------------- 255

Query: 65  GLTLENRNSSEYASSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYPV 124
                                   P L++IIMSA+LNA  FSEF  GA++ ++ GRQYPV
Sbjct: 256 ------------------------PALRVIIMSATLNAERFSEFFDGAEICYISGRQYPV 296

Query: 125 AIFYTRQPILDYIEGTLITIF 146
            I YT  P  DY++  L TIF
Sbjct: 316 QIHYTYTPEPDYLDACLRTIF 296

[Close]

BLAST of CSPI06G02350 vs. ExPASy Swiss-Prot
Match: Q9LZQ9 (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 OS=Arabidopsis thaliana OX=3702 GN=At3g62310 PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 4.9e-17
Identity = 53/140 (37.86%), Postives = 70/140 (50.00%), Query Frame = 0


Query: 5   LIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDN 64
           ++ REA+ D  L RY VII+DEAHERT+ TDVL G LK V K R                
Sbjct: 167 MLLREAMADPLLERYKVIILDEAHERTLATDVLFGLLKEVLKNR---------------- 226

Query: 65  GLTLENRNSSEYASSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYPV 124
                                   P LKL++MSA+L A  F ++  GA +  V GR +PV
Sbjct: 227 ------------------------PDLKLVVMSATLEAEKFQDYFSGAPLMKVPGRLHPV 266

Query: 125 AIFYTRQPILDYIEGTLITI 145
            IFYT++P  DY+E  + T+
Sbjct: 287 EIFYTQEPERDYLEAAIRTV 266

[Close]

BLAST of CSPI06G02350 vs. ExPASy TrEMBL
Match: A0A0A0KDJ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014760 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 8.0e-71
Identity = 144/145 (99.31%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MSLLLIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLN 60
           MSLLLIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLN
Sbjct: 1   MSLLLIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLN 60

Query: 61  TNDNGLTLENRNSSEYASSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGR 120
           TNDNGLTLENRNSSEYA SLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGR
Sbjct: 61  TNDNGLTLENRNSSEYAFSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGR 120

Query: 121 QYPVAIFYTRQPILDYIEGTLITIF 146
           QYPVAIFYTRQPILDYIEGTLITIF
Sbjct: 121 QYPVAIFYTRQPILDYIEGTLITIF 145

[Close]

BLAST of CSPI06G02350 vs. ExPASy TrEMBL
Match: A0A1S3CJ82 (pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 OS=Cucumis melo OX=3656 GN=LOC103501587 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 5.8e-45
Identity = 100/141 (70.92%), Postives = 116/141 (82.27%), Query Frame = 0


Query: 5   LIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDN 64
           L+ REALLD YLSRYSVIIVDEAHERTV TDVLLG+LK+VQK RS+SL +S N  N N N
Sbjct: 134 LLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGFLKKVQKTRSRSLNDSFNTENVNTN 193

Query: 65  GLTLENRNSSEYASSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYPV 124
           GL LE  N+ +Y SSL++ +GRKLPPLKLIIMSASL+A LFSE+ GGA+ F + GRQYPV
Sbjct: 194 GLVLEKGNNGKYVSSLRQHRGRKLPPLKLIIMSASLDARLFSEYFGGARAFRIPGRQYPV 253

Query: 125 AIFYTRQPILDYIEGTLITIF 146
           AI YTR+ +LDY E TLITIF
Sbjct: 254 AISYTRKHVLDYSETTLITIF 274

[Close]

BLAST of CSPI06G02350 vs. ExPASy TrEMBL
Match: A0A6J1EVL1 (pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 OS=Cucurbita moschata OX=3662 GN=LOC111438478 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 9.9e-45
Identity = 98/141 (69.50%), Postives = 119/141 (84.40%), Query Frame = 0


Query: 5   LIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDN 64
           L+ REALLD +LSRYSVIIVDEAHERTV+TDVLLG+LK+VQK RS+SL +S N  N + N
Sbjct: 134 LLLREALLDPFLSRYSVIIVDEAHERTVNTDVLLGFLKKVQKTRSRSLNDSLNAENMHAN 193

Query: 65  GLTLENRNSSEYASSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYPV 124
           GL +EN N+ +YASSL++ +GRKLPPLKLIIMSASL+A LFSE+ GGA+   V GRQ+PV
Sbjct: 194 GLVVENGNNGKYASSLRQYRGRKLPPLKLIIMSASLDARLFSEYFGGARALRVQGRQHPV 253

Query: 125 AIFYTRQPILDYIEGTLITIF 146
           AIFYTR+ + DY+E TLITIF
Sbjct: 254 AIFYTRKHVSDYLEATLITIF 274

[Close]

BLAST of CSPI06G02350 vs. ExPASy TrEMBL
Match: A0A5A7SXH3 (Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold400G00280 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.7e-44
Identity = 99/141 (70.21%), Postives = 116/141 (82.27%), Query Frame = 0


Query: 5   LIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDN 64
           L+ REALLD YLSRYSVIIVDEAHERTV TDVLLG+LK+VQK RS+SL +S N  N N N
Sbjct: 405 LLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGFLKKVQKTRSRSLNDSFNTENVNTN 464

Query: 65  GLTLENRNSSEYASSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYPV 124
           GL L+  N+ +Y SSL++ +GRKLPPLKLIIMSASL+A LFSE+ GGA+ F + GRQYPV
Sbjct: 465 GLVLKKGNNGKYVSSLRQHRGRKLPPLKLIIMSASLDARLFSEYFGGARAFRIPGRQYPV 524

Query: 125 AIFYTRQPILDYIEGTLITIF 146
           AI YTR+ +LDY E TLITIF
Sbjct: 525 AISYTRKHVLDYSETTLITIF 545

[Close]

BLAST of CSPI06G02350 vs. ExPASy TrEMBL
Match: A0A5D3BSZ3 (Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold925G00290 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.7e-44
Identity = 99/141 (70.21%), Postives = 116/141 (82.27%), Query Frame = 0


Query: 5   LIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDN 64
           L+ REALLD YLSRYSVIIVDEAHERTV TDVLLG+LK+VQK RS+SL +S N  N N N
Sbjct: 405 LLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGFLKKVQKTRSRSLNDSFNTENVNTN 464

Query: 65  GLTLENRNSSEYASSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYPV 124
           GL L+  N+ +Y SSL++ +GRKLPPLKLIIMSASL+A LFSE+ GGA+ F + GRQYPV
Sbjct: 465 GLVLKKGNNGKYVSSLRQHRGRKLPPLKLIIMSASLDARLFSEYFGGARAFRIPGRQYPV 524

Query: 125 AIFYTRQPILDYIEGTLITIF 146
           AI YTR+ +LDY E TLITIF
Sbjct: 525 AISYTRKHVLDYSETTLITIF 545

[Close]

BLAST of CSPI06G02350 vs. NCBI nr
Match: XP_011658383.1 (pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 [Cucumis sativus])

HSP 1 Score: 266.9 bits (681), Expect = 1.0e-67
Identity = 137/141 (97.16%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 5   LIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDN 64
           ++ REALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDN
Sbjct: 145 ILLREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDN 204

Query: 65  GLTLENRNSSEYASSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYPV 124
           GLTLENRNSSEYA SLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYPV
Sbjct: 205 GLTLENRNSSEYAFSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYPV 264

Query: 125 AIFYTRQPILDYIEGTLITIF 146
           AIFYTRQPILDYIEGTLITIF
Sbjct: 265 AIFYTRQPILDYIEGTLITIF 285

[Close]

BLAST of CSPI06G02350 vs. NCBI nr
Match: KAE8646584.1 (hypothetical protein Csa_005054 [Cucumis sativus])

HSP 1 Score: 266.9 bits (681), Expect = 1.0e-67
Identity = 137/141 (97.16%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 5   LIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDN 64
           ++ REALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDN
Sbjct: 102 ILLREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDN 161

Query: 65  GLTLENRNSSEYASSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYPV 124
           GLTLENRNSSEYA SLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYPV
Sbjct: 162 GLTLENRNSSEYAFSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYPV 221

Query: 125 AIFYTRQPILDYIEGTLITIF 146
           AIFYTRQPILDYIEGTLITIF
Sbjct: 222 AIFYTRQPILDYIEGTLITIF 242

[Close]

BLAST of CSPI06G02350 vs. NCBI nr
Match: XP_038904721.1 (pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 isoform X1 [Benincasa hispida])

HSP 1 Score: 194.9 bits (494), Expect = 4.9e-46
Identity = 102/141 (72.34%), Postives = 116/141 (82.27%), Query Frame = 0


Query: 5   LIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDN 64
           L+ REALLD YLSRYSVIIVDEAHERTV+TDVLLG+LK VQK RS+SL  S N  N N N
Sbjct: 134 LLLREALLDPYLSRYSVIIVDEAHERTVNTDVLLGFLKEVQKTRSRSLNNSFNTENMNSN 193

Query: 65  GLTLENRNSSEYASSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYPV 124
           GL LE+ N+ +Y SSL++ +GRKLPPLKLIIMSASLNA LFSE+ GGA+ F V GRQYPV
Sbjct: 194 GLVLESGNNGKYVSSLRQYRGRKLPPLKLIIMSASLNARLFSEYFGGARAFRVQGRQYPV 253

Query: 125 AIFYTRQPILDYIEGTLITIF 146
           AIFYTR+ + DY E TLITIF
Sbjct: 254 AIFYTRKHVSDYSEATLITIF 274

[Close]

BLAST of CSPI06G02350 vs. NCBI nr
Match: XP_038904722.1 (pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 isoform X2 [Benincasa hispida])

HSP 1 Score: 194.9 bits (494), Expect = 4.9e-46
Identity = 102/141 (72.34%), Postives = 116/141 (82.27%), Query Frame = 0


Query: 5   LIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDN 64
           L+ REALLD YLSRYSVIIVDEAHERTV+TDVLLG+LK VQK RS+SL  S N  N N N
Sbjct: 134 LLLREALLDPYLSRYSVIIVDEAHERTVNTDVLLGFLKEVQKTRSRSLNNSFNTENMNSN 193

Query: 65  GLTLENRNSSEYASSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYPV 124
           GL LE+ N+ +Y SSL++ +GRKLPPLKLIIMSASLNA LFSE+ GGA+ F V GRQYPV
Sbjct: 194 GLVLESGNNGKYVSSLRQYRGRKLPPLKLIIMSASLNARLFSEYFGGARAFRVQGRQYPV 253

Query: 125 AIFYTRQPILDYIEGTLITIF 146
           AIFYTR+ + DY E TLITIF
Sbjct: 254 AIFYTRKHVSDYSEATLITIF 274

[Close]

BLAST of CSPI06G02350 vs. NCBI nr
Match: XP_008463416.1 (PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 [Cucumis melo] >XP_008463417.1 PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 [Cucumis melo] >XP_016903035.1 PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 [Cucumis melo])

HSP 1 Score: 190.3 bits (482), Expect = 1.2e-44
Identity = 100/141 (70.92%), Postives = 116/141 (82.27%), Query Frame = 0


Query: 5   LIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDN 64
           L+ REALLD YLSRYSVIIVDEAHERTV TDVLLG+LK+VQK RS+SL +S N  N N N
Sbjct: 134 LLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGFLKKVQKTRSRSLNDSFNTENVNTN 193

Query: 65  GLTLENRNSSEYASSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYPV 124
           GL LE  N+ +Y SSL++ +GRKLPPLKLIIMSASL+A LFSE+ GGA+ F + GRQYPV
Sbjct: 194 GLVLEKGNNGKYVSSLRQHRGRKLPPLKLIIMSASLDARLFSEYFGGARAFRIPGRQYPV 253

Query: 125 AIFYTRQPILDYIEGTLITIF 146
           AI YTR+ +LDY E TLITIF
Sbjct: 254 AISYTRKHVLDYSETTLITIF 274

[Close]

BLAST of CSPI06G02350 vs. TAIR 10
Match: AT1G26370.1 (RNA helicase family protein )

HSP 1 Score: 144.4 bits (363), Expect = 7.0e-35
Identity = 80/142 (56.34%), Postives = 101/142 (71.13%), Query Frame = 0


Query: 5   LIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLN-TND 64
           L+ REALLD +LSRYSVIIVDEAH+R+V TDVLL  LK++Q+ RS+ ++E +   N  + 
Sbjct: 142 LLLREALLDPHLSRYSVIIVDEAHDRSVHTDVLLALLKKIQRTRSQPVSEKTEFGNVASQ 201

Query: 65  NGLTLENRNSSEYASSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYP 124
              T  + N  +    LK  QGRKL PLKLIIMSASL+A +FSE+ GGAK  HV GRQ+P
Sbjct: 202 VQTTTRDANGPQQNGVLKGYQGRKLSPLKLIIMSASLDARVFSEYFGGAKAVHVQGRQFP 261

Query: 125 VAIFYTRQPILDYIEGTLITIF 146
           V I YT  P  DY++ TL+TIF
Sbjct: 262 VDILYTVHPESDYVDATLVTIF 283

[Close]

BLAST of CSPI06G02350 vs. TAIR 10
Match: AT2G47250.1 (RNA helicase family protein )

HSP 1 Score: 89.0 bits (219), Expect = 3.5e-18
Identity = 55/140 (39.29%), Postives = 71/140 (50.71%), Query Frame = 0


Query: 5   LIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDN 64
           ++ REA+ D  L RY VII+DEAHERT+ TDVL G LK V                    
Sbjct: 171 MLLREAMADPLLERYKVIILDEAHERTLATDVLFGLLKEV-------------------- 230

Query: 65  GLTLENRNSSEYASSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYPV 124
              L NR                 P LKL++MSA+L A  F E+  GA +  V GR +PV
Sbjct: 231 ---LRNR-----------------PDLKLVVMSATLEAEKFQEYFSGAPLMKVPGRLHPV 270

Query: 125 AIFYTRQPILDYIEGTLITI 145
            IFYT++P  DY+E  + T+
Sbjct: 291 EIFYTQEPERDYLEAAIRTV 270

[Close]

BLAST of CSPI06G02350 vs. TAIR 10
Match: AT3G62310.1 (RNA helicase family protein )

HSP 1 Score: 89.0 bits (219), Expect = 3.5e-18
Identity = 53/140 (37.86%), Postives = 70/140 (50.00%), Query Frame = 0


Query: 5   LIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDN 64
           ++ REA+ D  L RY VII+DEAHERT+ TDVL G LK V K R                
Sbjct: 167 MLLREAMADPLLERYKVIILDEAHERTLATDVLFGLLKEVLKNR---------------- 226

Query: 65  GLTLENRNSSEYASSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYPV 124
                                   P LKL++MSA+L A  F ++  GA +  V GR +PV
Sbjct: 227 ------------------------PDLKLVVMSATLEAEKFQDYFSGAPLMKVPGRLHPV 266

Query: 125 AIFYTRQPILDYIEGTLITI 145
            IFYT++P  DY+E  + T+
Sbjct: 287 EIFYTQEPERDYLEAAIRTV 266

[Close]

BLAST of CSPI06G02350 vs. TAIR 10
Match: AT3G26560.1 (ATP-dependent RNA helicase, putative )

HSP 1 Score: 85.5 bits (210), Expect = 3.9e-17
Identity = 50/140 (35.71%), Postives = 71/140 (50.71%), Query Frame = 0


Query: 5   LIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDN 64
           ++ RE L+D  LS+YSVI++DEAHERT+ TDVL G LK++ K R                
Sbjct: 615 MLLREILIDENLSQYSVIMLDEAHERTIHTDVLFGLLKKLMKRRL--------------- 674

Query: 65  GLTLENRNSSEYASSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYPV 124
                                     L+LI+ SA+L+A  FS +     +F + GR +PV
Sbjct: 675 -------------------------DLRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPV 714

Query: 125 AIFYTRQPILDYIEGTLITI 145
            I YT+QP  DY++  LIT+
Sbjct: 735 EILYTKQPETDYLDAALITV 714

[Close]

BLAST of CSPI06G02350 vs. TAIR 10
Match: AT5G13010.1 (RNA helicase family protein )

HSP 1 Score: 79.0 bits (193), Expect = 3.6e-15
Identity = 46/137 (33.58%), Postives = 66/137 (48.18%), Query Frame = 0


Query: 5   LIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDN 64
           ++ RE L DS L +Y V+++DEAHER+++TDVL G LK+V   R                
Sbjct: 658 VLLRETLKDSDLDKYRVVVMDEAHERSLNTDVLFGILKKVVARRR--------------- 717

Query: 65  GLTLENRNSSEYASSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYPV 124
                                      KLI+ SA+LNA  FS F G   +F++ GR +PV
Sbjct: 718 -------------------------DFKLIVTSATLNAQKFSNFFGSVPIFNIPGRTFPV 754

Query: 125 AIFYTRQPILDYIEGTL 142
            I Y++ P  DY+E  +
Sbjct: 778 NILYSKTPCEDYVEAAV 754

The following BLAST results are available for this feature:

BLAST of CSPI06G02350 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4IE66	9.9e-34	56.34	Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 OS=Arabidopsis thalia...	[more]
Q9H6R0	1.8e-19	37.59	ATP-dependent RNA helicase DHX33 OS=Homo sapiens OX=9606 GN=DHX33 PE=1 SV=2	[more]
Q80VY9	9.0e-19	37.59	ATP-dependent RNA helicase DHX33 OS=Mus musculus OX=10090 GN=Dhx33 PE=1 SV=1	[more]
Q03319	9.9e-18	38.30	Probable ATP-dependent RNA helicase prh1 OS=Schizosaccharomyces pombe (strain 97...	[more]
Q9LZQ9	4.9e-17	37.86	Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 OS=Arabidopsi...	[more]

BLAST of CSPI06G02350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDJ5	8.0e-71	99.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014760 PE=4 SV=1	[more]
A0A1S3CJ82	5.8e-45	70.92	pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 OS=Cucumis melo OX=36...	[more]
A0A6J1EVL1	9.9e-45	69.50	pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 OS=Cucurbita moschata...	[more]
A0A5A7SXH3	1.7e-44	70.21	Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 OS=Cucumis melo var. ...	[more]
A0A5D3BSZ3	1.7e-44	70.21	Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 OS=Cucumis melo var. ...	[more]

BLAST of CSPI06G02350 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011658383.1	1.0e-67	97.16	pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 [Cucumis sativus]	[more]
KAE8646584.1	1.0e-67	97.16	hypothetical protein Csa_005054 [Cucumis sativus]	[more]
XP_038904721.1	4.9e-46	72.34	pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 isoform X1 [Benincasa...	[more]
XP_038904722.1	4.9e-46	72.34	pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 isoform X2 [Benincasa...	[more]
XP_008463416.1	1.2e-44	70.92	PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 [Cucumis m...	[more]

BLAST of CSPI06G02350 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26370.1	7.0e-35	56.34	RNA helicase family protein	[more]
AT2G47250.1	3.5e-18	39.29	RNA helicase family protein	[more]
AT3G62310.1	3.5e-18	37.86	RNA helicase family protein	[more]
AT3G26560.1	3.9e-17	35.71	ATP-dependent RNA helicase, putative	[more]
AT5G13010.1	3.6e-15	33.58	RNA helicase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 3..120 e-value: 3.1E-24 score: 87.4
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 8..142
None	No IPR available	PANTHER	PTHR18934	ATP-DEPENDENT RNA HELICASE	coord: 5..145
None	No IPR available	PANTHER	PTHR18934:SF118	ATP-DEPENDENT RNA HELICASE DHX33	coord: 5..145
IPR002464	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	PROSITE	PS00690	DEAH_ATP_HELICASE	coord: 20..29

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G02350.1	CSPI06G02350.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003724	RNA helicase activity