CSPI05G30740 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI05G30740
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	RNA-binding protein 7-like isoform X1
Location	Chr5: 28536949 .. 28541431 (-)
RNA-Seq Expression	CSPI05G30740
Synteny	CSPI05G30740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAACGTAAAGGGTTAAATTTACGTATAAAAATAACTCTCTCTTTAACTTCTCTCCCTCCTACACCTTCCAGCCCTTTCAAACCTCTGGCGCCATCCGCCAATAAACCCACGCAATCGATTTCGAAGCACCGTTGTTTTCAAGCTTGGCGGTCTCAGCTTCCGGCGCCTACACACGCTTCAATCGTTTCTCATACGGACTACCCATATCCTCAAACGGATTACAATCAATTCACTTTTCGACTTTTTTTCGGGTAAGATTTAGTGAGTATGGACACTCTCAATTCCTTTCGGACTTATATAAACTGCATTCGAATTGTTCCCAGCATTTGAAAAAATACAAACCGCATTTGGAAAATCGAAATCGAAGCAATATAAATAGAGGTTTTGTTTGGTTACTTTCTTCGCCGTTTTACTTTTTCTCTTTTATCCTTACCTTTTTGCTTTTTCAAATTTCGGTTTAGGCTTTTGCATTTGAACTTGCAGTACAACCATGTCAGGAGGGTCTAATGCATGCACCGTTTACGTTGGTATGTTTGTTTTTATCTCTATCTCTATCTCTATCTCTATCCATCTTTAATCATGTTTGGATCTTTCGTTTTCCGTTCATGAGGATTCTGATTGCGTTTAATACTTCATGTGTTAACTTTTTTTAAGTTTTTCGTATGGAAATATGCTTTTTGGTGGATCGTTTTGTAATAGTTGTGTTGTGTTTATTTGTTTCTATTACGCCATATTTATTGATTCTCTGACAAAGCCATGCTTATATTTTTAATGGTGGGTTCATAATTGAATAGAAGGTGTAATGGGGGAGTTTAGGAGGGAGACATGGATAAACAAAGATCATATTTGAACGAGAGAGATCCTATCTATACCAATAAGGTGCAAAAGCAAATCGCATTTGTAGGAACTTCAAGTGTGCTTAGCTTGGAGCAAATCTATGTTGGATGACCTAAGAATTGATGACCTAAGAATTTTCCAAAAATTCATTTGAGTGAAGATAAAACATACCGTCTTTAGAAGCATTCATGACAAGCTAGGATGACATACCAAGGTTAGAAGGGAAACATTCATTACAAGCAAGGATGACATAACCGGGTTGGAGGGGATGCAACGGGATGTTGGGGCATTAGTTGCTAAATCCAAATTTTGACTGTTGGGTTGGGGCGTTACAAATATTATTTTGTTGGCTAAATCTGTTCCTTCCCAACATTTCCCTCGGAAATTAGTTTGATTTATGTTTATAGCATATTTGATTTGTTGCTTTTTGGTGAAAGAGGATTGGGGGTTGAACTTATTTCGTTTTTGTTTTTCTTAGATTTGTTAGATTATCTTCGTTTATTGCTTAACTGGTTTGATCTTAATTCTCATTTATTCAATCATCTTTGATCTGTGTGGGCTTTGCTCCATTTGAGTATTGTTGACAGTTTATTCTTTAATATGTCTTTAACATAACTATATATTTCTTAACTTCCCCAGTAGTCTTTAACATGACTATATATTTATTTACTTTGATACAAGGTTATGAATTGAAGTGTTTAGGATGCAGCCTATCATTTTGAGTTTAGGATGCCGCATTTTCTTATGAGTTTGATTTCGTTACTTTCTTCACTTTCTGTAGGGAACTTGGATGAAAGGGTAAGTGATAGGGTTCTTTATGACATTCTAATCCAAGCTGGGCGGGTAGTGGACTTGCACATTCCTCGGGACAAGGATACTGGTAAACCCAAGGGTTTTGCTTTTGCAGTGTATGAAAGTGAGGAGATTGCCAACTATGCCGTTAAGCTTTTCTCTGGCCTTGTGTCTCTTCATAGCCGTATCTTGAAGTTCGCAGTATGTTTTCTTTCTCAATGCAAATTTGTCATGGTTTCCTTAGTTTCTTTTGTCCTGATTTTTCTTGATCAACTTTGTTTCCTAACTTCAAAATATTGTTTAATTTACTTTATGATCCAAAATTCGTGTCATATACCATCTTTTCTTGTTTGACGCATTTTGATCATTAATTCACTTTTAGATATATATCATTTGTCTTTTAACATGTGCATTTGCAATTCTAGTTTTCTTGACTTTATATAATAATAAATTTTGATGGACTTAACTTTAATATATTGCATGACTTTATTGAGCTTTTAGAAATTACATAATAATTATATGGCTTCGTTCTCGTTGTTAATTAAAAATCTAGTTTGCATTTAGAAACAAACCATGTCTTCGTAATTAATTGACGGGAAGAACCAAGATATACATGGATCATCATGATGAATCTACTCTAGTTTAGTTCATGTCACCAGAAGTTTAAATGACATGGTTGGAAAACCTTTGGCTTCCCAATTTTTAGGGATGAAACATGGGTGTTAGTACATTATTGACAAAAGAAAAAAGAAAATCTATGGTTTTCCAATTTAAATTATAGATTGTTTCTTTTCAAATATTTTTATTTACTGTGTGGTTTCGTAGTTCAATTTTATGACTCAGATGATTGTGCAATTTTCTAGTGTTACCTTTGACTATGTGGTAAGTTGTTAACTTATGGGAATGATGCAGTTTTTTTATTTTATGCAAGCAGGTATCTGGGCAAGACAAGTCTTCACCTACTAATAGTGCAATCACTTCATCATCAAATGTATCTCATAAATCAAGGTCTCATGGTTACTCTAATGAAATATCTCAGTATTCCAATCACCTGTCAACATCATGCAGAACTTACCCTGAAAACCATGTACAAGGTGATTTAACTTTTCTTTATATTTGTCTTTGCATTGTTAGTTTTCACTAAGAATTGTGTATTTTTACTTTCCTGGCCTTTCCCACATCAATTCAACAAAAAATTATTTCTTTTATTCTTCAGCGCTTCTTTACCATGGTTTAGTTAACCAATATAATGGGTATGGATCACATTTGGATAACTACAATAAAGAATACAGTCAGAGATACCATGCAACAACTTTGGATAGCTTTAAGCAACCTAAATCACGCCGCTATGTTACAAATTATCCAGTATACTATACTTATGATCTTTTGAAGTAAGGCAGGCGCAGCTGGTGCCTTCCATTTTGGTTAATCTTGAATGGTAATTTAAATCTTAGGAAAAGTTGTATTGCATAGTTGGATGCAAATAGGTTAATAGTCATTTTGTAGATGCACAAGTTCATATGATTTTGTATGTTGTGTTGTTATAATCTAATTAAAGTATTGTAGTGAAGAAGCTAGTTTCCTTTCTTTAATTCCTGTTTAATTTTATGGATTATAAATGATAGTTTTCACTGATTGAAAGGTACCATAACCGTTTTTTTTTTTGTATATAAAGCATTTAGTTATCAATTTCTTTGTCCAGTTTTCAGTTTTTTAGGCCATGTTTGAAAAGATGACCAAAGTTTGAAAGTCAAATGAGATTTGAAAACTATTTAAAAGAAATTTCTGAAAGTAGTTTCTCTTCAAGCAAGCATAATTTTGAAAAGAGAAAGAAAAATCTGTTATCAAGATCTACTTTTTGTTTGTCTTGTTCCTATGCCTTTATTTGTTGAAACTTCTAATTCTTATATCTTCAAGTGTGGCTTCATCTGAAATCAATGTATTGCATGCCATGCTTGAATTTTCAAGATGCAAACATTTGGTGATCAGTCTAGTGGAAGTTCTGCTATCAGAGGATCATTATATTATATTGGTTTCTATCAAAATCCAAGATTCTAAACCCCTTCTCTTTTATATACACTCTTCTTTATTCATAATAAGAATTTGTAATTTTATTTCTACCTTTTTATTGGTTGTGAAATCTGTATTTGATGTAATATATACACATTTGTTTCTGTGTATAATAAAATGATCTTCTTTGGCTACCTTGTAAGATTTGGTATGATATACATATGTACTAGGTATACAAAAATCAAATTTAGAAGTACATAATTAAAATGATTTCTTTTAATAACACAACTACATATCCAAACGATTCCATCAATTAAAATTTGATTATTCATCTCAACAAGAGTTGTTGTTTTGTTCGTTTATTTTTGTTTCTTTCTCTTTGGTTTTAAGCAATTGCTATGATAATTTGTTTGGACTTATTTTTATACGTACATTGACTAATTTGCATTCATATGCAATCATTGAAATGGTCTATGCAAGAGATGCACGTATAAATTAGCCTTCATATTTCTCATCTTGCTTCAAACATTAGTCATTCATTTCTCTTGCGTTCTCACCTTAGTTAACAATCACGGAGGCTTCACCATCTAATCCTCCAAGCATGATATACGAAGTTTTCATAAATTTCAGAGGGATAGACGTTCGGAGCACACTCCTCGGACATTTGTCCCAAACGTTGTGTAATTACGGATTGATAATGATCTTTGTGGATAGTGAGGAACTGAAAATTGGAAACCGTTTGGATGAGAGGCTGGAAAGATCAATTGAGGAATCAAGAACTGCTATTGTGATTTTATCACCAAACTATGCTATTGCAAAATGGCCCTTGAGAGAGTTGGCGA

mRNA sequence

CAAAACGTAAAGGGTTAAATTTACGTATAAAAATAACTCTCTCTTTAACTTCTCTCCCTCCTACACCTTCCAGCCCTTTCAAACCTCTGGCGCCATCCGCCAATAAACCCACGCAATCGATTTCGAAGCACCGTTGTTTTCAAGCTTGGCGGTCTCAGCTTCCGGCGCCTACACACGCTTCAATCGTTTCTCATACGGACTACCCATATCCTCAAACGGATTACAATCAATTCACTTTTCGACTTTTTTTCGGGCTTTTGCATTTGAACTTGCAGTACAACCATGTCAGGAGGGTCTAATGCATGCACCGTTTACGTTGGGAACTTGGATGAAAGGGTAAGTGATAGGGTTCTTTATGACATTCTAATCCAAGCTGGGCGGGTAGTGGACTTGCACATTCCTCGGGACAAGGATACTGGTAAACCCAAGGGTTTTGCTTTTGCAGTGTATGAAAGTGAGGAGATTGCCAACTATGCCGTTAAGCTTTTCTCTGGCCTTGTGTCTCTTCATAGCCGTATCTTGAAGTTCGCAGTATCTGGGCAAGACAAGTCTTCACCTACTAATAGTGCAATCACTTCATCATCAAATGTATCTCATAAATCAAGGTCTCATGGTTACTCTAATGAAATATCTCAGTATTCCAATCACCTGTCAACATCATGCAGAACTTACCCTGAAAACCATGTACAAGTTAACAATCACGGAGGCTTCACCATCTAATCCTCCAAGCATGATATACGAAGTTTTCATAAATTTCAGAGGGATAGACGTTCGGAGCACACTCCTCGGACATTTGTCCCAAACGTTGTGTAATTACGGATTGATAATGATCTTTGTGGATAGTGAGGAACTGAAAATTGGAAACCGTTTGGATGAGAGGCTGGAAAGATCAATTGAGGAATCAAGAACTGCTATTGTGATTTTATCACCAAACTATGCTATTGCAAAATGGCCCTTGAGAGAGTTGGCGA

Coding sequence (CDS)

ATGTCAGGAGGGTCTAATGCATGCACCGTTTACGTTGGGAACTTGGATGAAAGGGTAAGTGATAGGGTTCTTTATGACATTCTAATCCAAGCTGGGCGGGTAGTGGACTTGCACATTCCTCGGGACAAGGATACTGGTAAACCCAAGGGTTTTGCTTTTGCAGTGTATGAAAGTGAGGAGATTGCCAACTATGCCGTTAAGCTTTTCTCTGGCCTTGTGTCTCTTCATAGCCGTATCTTGAAGTTCGCAGTATCTGGGCAAGACAAGTCTTCACCTACTAATAGTGCAATCACTTCATCATCAAATGTATCTCATAAATCAAGGTCTCATGGTTACTCTAATGAAATATCTCAGTATTCCAATCACCTGTCAACATCATGCAGAACTTACCCTGAAAACCATGTACAAGTTAACAATCACGGAGGCTTCACCATCTAA

Protein sequence

MSGGSNACTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKDTGKPKGFAFAVYESEEIANYAVKLFSGLVSLHSRILKFAVSGQDKSSPTNSAITSSSNVSHKSRSHGYSNEISQYSNHLSTSCRTYPENHVQVNNHGGFTI*

Homology

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BLAST of CSPI05G30740 vs. ExPASy Swiss-Prot
Match: Q15427 (Splicing factor 3B subunit 4 OS=Homo sapiens OX=9606 GN=SF3B4 PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.4e-11
Identity = 35/95 (36.84%), Postives = 65/95 (68.42%), Query Frame = 0


Query: 9   TVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKDTGKPKGFAFAVYESEEIANYAVKL 68
           TVYVG LDE+VS+ +L+++ +QAG VV+ H+P+D+ TG+ +G+ F  + SEE A+YA+K+
Sbjct: 14  TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73

Query: 69  FSGLVSLHSRILKFAVSGQDKSSPTNSAITSSSNV 104
            + ++ L+ + ++      +K+S  N  +   +N+
Sbjct: 74  MN-MIKLYGKPIRV-----NKASAHNKNLDVGANI 102

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BLAST of CSPI05G30740 vs. ExPASy Swiss-Prot
Match: Q8QZY9 (Splicing factor 3B subunit 4 OS=Mus musculus OX=10090 GN=Sf3b4 PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.4e-11
Identity = 35/95 (36.84%), Postives = 65/95 (68.42%), Query Frame = 0


Query: 9   TVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKDTGKPKGFAFAVYESEEIANYAVKL 68
           TVYVG LDE+VS+ +L+++ +QAG VV+ H+P+D+ TG+ +G+ F  + SEE A+YA+K+
Sbjct: 14  TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73

Query: 69  FSGLVSLHSRILKFAVSGQDKSSPTNSAITSSSNV 104
            + ++ L+ + ++      +K+S  N  +   +N+
Sbjct: 74  MN-MIKLYGKPIRV-----NKASAHNKNLDVGANI 102

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BLAST of CSPI05G30740 vs. ExPASy Swiss-Prot
Match: Q6AYL5 (Splicing factor 3B subunit 4 OS=Rattus norvegicus OX=10116 GN=Sf3b4 PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.4e-11
Identity = 35/95 (36.84%), Postives = 65/95 (68.42%), Query Frame = 0


Query: 9   TVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKDTGKPKGFAFAVYESEEIANYAVKL 68
           TVYVG LDE+VS+ +L+++ +QAG VV+ H+P+D+ TG+ +G+ F  + SEE A+YA+K+
Sbjct: 14  TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73

Query: 69  FSGLVSLHSRILKFAVSGQDKSSPTNSAITSSSNV 104
            + ++ L+ + ++      +K+S  N  +   +N+
Sbjct: 74  MN-MIKLYGKPIRV-----NKASAHNKNLDVGANI 102

[Close]

BLAST of CSPI05G30740 vs. ExPASy Swiss-Prot
Match: Q09442 (Splicing factor 3B subunit 4 OS=Caenorhabditis elegans OX=6239 GN=sap-49 PE=1 SV=2)

HSP 1 Score: 70.1 bits (170), Expect = 3.2e-11
Identity = 29/73 (39.73%), Postives = 54/73 (73.97%), Query Frame = 0


Query: 9  TVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKDTGKPKGFAFAVYESEEIANYAVKL 68
          T+YVG LDE+VS+ +L+++++QAG VV +++P+D+ T   +GF F  +  EE A+YA+K+
Sbjct: 14 TIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKI 73

Query: 69 FSGLVSLHSRILK 82
           + ++ L+ + +K
Sbjct: 74 LN-MIKLYGKPIK 85

[Close]

BLAST of CSPI05G30740 vs. ExPASy Swiss-Prot
Match: O14102 (Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=sap49 PE=3 SV=2)

HSP 1 Score: 65.5 bits (158), Expect = 7.8e-10
Identity = 31/85 (36.47%), Postives = 53/85 (62.35%), Query Frame = 0


Query: 9  TVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKDTGKPKGFAFAVYESEEIANYAVKL 68
          T+Y+GNLDE+V+D +L+++ +QAG VV++HIPRD+      GF F  +  E+   YA ++
Sbjct: 12 TIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQI 71

Query: 69 FSGLVSLHSRILKFAVSGQDKSSPT 94
           +  V L  + ++   + QD+   T
Sbjct: 72 LN-QVKLFGKPIRVNRASQDRGVNT 95

[Close]

BLAST of CSPI05G30740 vs. ExPASy TrEMBL
Match: A0A0A0KXV1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G648670 PE=4 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 1.3e-103
Identity = 194/195 (99.49%), Postives = 194/195 (99.49%), Query Frame = 0


Query: 1   MSGGSNACTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKDTGKPKGFAFAVYESEE 60
           MSGGSNACTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKDTGKPKGFAFAVYESEE
Sbjct: 291 MSGGSNACTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKDTGKPKGFAFAVYESEE 350

Query: 61  IANYAVKLFSGLVSLHSRILKFAVSGQDKSSPTNSAITSSSNVSHKSRSHGYSNEISQYS 120
           IANYAVKLFSGLVSLHSRILKFAVSGQDKSSPTNSAITSSSNVSHKSRSHGYSNEISQYS
Sbjct: 351 IANYAVKLFSGLVSLHSRILKFAVSGQDKSSPTNSAITSSSNVSHKSRSHGYSNEISQYS 410

Query: 121 NHLSTSCRTYPENHVQALLYHGLVNQYNGYGSHLDNYNKEYSQRYHATTLDSFKQPKSRR 180
           NHLSTSCRTYPENHVQALLYHGLVNQYNGYGSHLDNYNKEYSQRYHATTLDSFKQPKSR 
Sbjct: 411 NHLSTSCRTYPENHVQALLYHGLVNQYNGYGSHLDNYNKEYSQRYHATTLDSFKQPKSRC 470

Query: 181 YVTNYPVYYTYDLLK 196
           YVTNYPVYYTYDLLK
Sbjct: 471 YVTNYPVYYTYDLLK 485

[Close]

BLAST of CSPI05G30740 vs. ExPASy TrEMBL
Match: A0A5A7TCE4 (RNA-binding protein 7-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G00930 PE=4 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 3.3e-96
Identity = 183/196 (93.37%), Postives = 190/196 (96.94%), Query Frame = 0


Query: 1   MSGGSNACTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKDTGKPKGFAFAVYESEE 60
           MSGGSN+CTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKD+GKPKGFAFAVYESEE
Sbjct: 1   MSGGSNSCTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKDSGKPKGFAFAVYESEE 60

Query: 61  IANYAVKLFSGLVSLHSRILKFAVSGQDKSSPTNSAITSSSNVSHKSRSHGYSNEISQYS 120
           IANYAVKLFSGLVSLHSRILKFAVSGQDKSSPTNSA+TSSSNVSHKSRSHGYSNEISQYS
Sbjct: 61  IANYAVKLFSGLVSLHSRILKFAVSGQDKSSPTNSAVTSSSNVSHKSRSHGYSNEISQYS 120

Query: 121 NHLSTSCRTYPENHVQALLYHGLVNQYNGYGSHLDNYNKEYSQRYHATTLDSFKQPKSRR 180
           NH ST CRTYPENHVQALLY GLVNQYNGYGSH+DNYNKEYSQRY  TTLDSFKQPKSRR
Sbjct: 121 NHPSTLCRTYPENHVQALLYLGLVNQYNGYGSHMDNYNKEYSQRYRGTTLDSFKQPKSRR 180

Query: 181 YVTNYPVYY-TYDLLK 196
           +VT+YPVYY +YDLLK
Sbjct: 181 HVTSYPVYYPSYDLLK 196

[Close]

BLAST of CSPI05G30740 vs. ExPASy TrEMBL
Match: A0A1S3CBQ3 (RNA-binding protein 7-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498659 PE=4 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 1.4e-94
Identity = 182/196 (92.86%), Postives = 188/196 (95.92%), Query Frame = 0


Query: 1   MSGGSNACTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKDTGKPKGFAFAVYESEE 60
           MSGGSN+CTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKD+G PKGFAFAVYESEE
Sbjct: 1   MSGGSNSCTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKDSGIPKGFAFAVYESEE 60

Query: 61  IANYAVKLFSGLVSLHSRILKFAVSGQDKSSPTNSAITSSSNVSHKSRSHGYSNEISQYS 120
           IANYAVKLFSGLVSLHSRILKFAVSGQDKSSPTNSA+TSSSNVSHKSRSHGYSNEISQYS
Sbjct: 61  IANYAVKLFSGLVSLHSRILKFAVSGQDKSSPTNSAVTSSSNVSHKSRSHGYSNEISQYS 120

Query: 121 NHLSTSCRTYPENHVQALLYHGLVNQYNGYGSHLDNYNKEYSQRYHATTLDSFKQPKSRR 180
           NH STSCRTYPENHVQALLY GLVNQYNGY SH+DNYNKEYSQRY  TTLDSFKQPKSRR
Sbjct: 121 NHPSTSCRTYPENHVQALLYLGLVNQYNGYASHMDNYNKEYSQRYGGTTLDSFKQPKSRR 180

Query: 181 YVTNYPVYY-TYDLLK 196
            VT+YPVYY +YDLLK
Sbjct: 181 NVTSYPVYYPSYDLLK 196

[Close]

BLAST of CSPI05G30740 vs. ExPASy TrEMBL
Match: A0A6J1I7S0 (RNA-binding protein 7-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472063 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 1.4e-73
Identity = 150/195 (76.92%), Postives = 168/195 (86.15%), Query Frame = 0


Query: 1   MSG-GSNACTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKDTGKPKGFAFAVYESE 60
           MSG  SN CT+YVGNLDERV+D+VLYDILIQAGRVVDLH+PRDK++GKPKGFAFA YE+E
Sbjct: 1   MSGRSSNRCTLYVGNLDERVTDKVLYDILIQAGRVVDLHMPRDKESGKPKGFAFAEYENE 60

Query: 61  EIANYAVKLFSGLVSLHSRILKFAVSGQDKSSPTNSAITSSSNVSHKSRSH---GYSNEI 120
           +I NYA+KLFSGLV+LH+R LKFAVSGQDK SP++SAITSSSN+SHKSRSH    YSNE 
Sbjct: 61  DITNYAIKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRSHIVSNYSNET 120

Query: 121 SQYSNHLSTSCR--TYPENHVQALLYHGLVNQYNGYGSHLDNYNKEYSQRYHATTLDSFK 180
           SQYSN LSTSCR   YPENH +ALLY GLV+QYNG G HLDNYN E SQRY  TTLDSF 
Sbjct: 121 SQYSNRLSTSCRFSAYPENHQEALLYPGLVDQYNGCGFHLDNYNNEQSQRYSRTTLDSFY 180

Query: 181 QPKSRRYVTNYPVYY 190
           Q KSRR+ T+YPVYY
Sbjct: 181 QTKSRRHDTSYPVYY 195

[Close]

BLAST of CSPI05G30740 vs. ExPASy TrEMBL
Match: A0A6J1EX61 (RNA-binding protein 7 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111438905 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 1.4e-73
Identity = 149/200 (74.50%), Postives = 170/200 (85.00%), Query Frame = 0


Query: 1   MSGGSNACTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKDTGKPKGFAFAVYESEE 60
           MSG SN CT+Y+GNLDERVSDRVLYDILIQAGRVVDLHIPRDK++G+P+G+AFA YE+EE
Sbjct: 1   MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE 60

Query: 61  IANYAVKLFSGLVSLHSRILKFAVSGQDKSSPTNSAITSSSNVSHKSRSH---GYSNEIS 120
           I NYAVKLFSGLV+LH+R LKFAVSGQDK SP++SAITSSSN+SHKSRS    GYSNEIS
Sbjct: 61  ITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRSQIVPGYSNEIS 120

Query: 121 QYSNHLSTSCR--TYPENHVQALLYHGLVNQYNGYGSHLDNYNKEYSQRYHATTLDSFKQ 180
            YSN LS SCR   YPENHV+A  Y GLVNQ NGYGS+ D++N +YSQRY  T LDSF  
Sbjct: 121 SYSNRLSNSCRFSAYPENHVEAPPYPGLVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNH 180

Query: 181 PKSRRYVTNYPVYY-TYDLL 195
           PKSRR+ T+YPVYY  Y+LL
Sbjct: 181 PKSRRHDTSYPVYYPPYELL 200

[Close]

BLAST of CSPI05G30740 vs. NCBI nr
Match: KAE8648991.1 (hypothetical protein Csa_008725 [Cucumis sativus])

HSP 1 Score: 367.1 bits (941), Expect = 9.6e-98
Identity = 185/187 (98.93%), Postives = 186/187 (99.47%), Query Frame = 0


Query: 1   MSGGSNACTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKDTGKPKGFAFAVYESEE 60
           MSGGSNACTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKDTGKPKGFAFAVYESEE
Sbjct: 1   MSGGSNACTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKDTGKPKGFAFAVYESEE 60

Query: 61  IANYAVKLFSGLVSLHSRILKFAVSGQDKSSPTNSAITSSSNVSHKSRSHGYSNEISQYS 120
           IANYAVKLFSGLVSLHSRILKFAVSGQDKSSPTNSAITSSSNVSHKSRSHGYSNEISQYS
Sbjct: 61  IANYAVKLFSGLVSLHSRILKFAVSGQDKSSPTNSAITSSSNVSHKSRSHGYSNEISQYS 120

Query: 121 NHLSTSCRTYPENHVQALLYHGLVNQYNGYGSHLDNYNKEYSQRYHATTLDSFKQPKSRR 180
           NHLSTSCRTYPENHVQALLYHGLVNQYNGYGSHLDNYNKEYSQRYHATTLDSFKQPKSR 
Sbjct: 121 NHLSTSCRTYPENHVQALLYHGLVNQYNGYGSHLDNYNKEYSQRYHATTLDSFKQPKSRC 180

Query: 181 YVTNYPV 188
           YVTNYP+
Sbjct: 181 YVTNYPL 187

[Close]

BLAST of CSPI05G30740 vs. NCBI nr
Match: KAA0039301.1 (RNA-binding protein 7-like isoform X1 [Cucumis melo var. makuwa] >TYK00485.1 RNA-binding protein 7-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 360.9 bits (925), Expect = 6.9e-96
Identity = 183/196 (93.37%), Postives = 190/196 (96.94%), Query Frame = 0


Query: 1   MSGGSNACTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKDTGKPKGFAFAVYESEE 60
           MSGGSN+CTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKD+GKPKGFAFAVYESEE
Sbjct: 1   MSGGSNSCTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKDSGKPKGFAFAVYESEE 60

Query: 61  IANYAVKLFSGLVSLHSRILKFAVSGQDKSSPTNSAITSSSNVSHKSRSHGYSNEISQYS 120
           IANYAVKLFSGLVSLHSRILKFAVSGQDKSSPTNSA+TSSSNVSHKSRSHGYSNEISQYS
Sbjct: 61  IANYAVKLFSGLVSLHSRILKFAVSGQDKSSPTNSAVTSSSNVSHKSRSHGYSNEISQYS 120

Query: 121 NHLSTSCRTYPENHVQALLYHGLVNQYNGYGSHLDNYNKEYSQRYHATTLDSFKQPKSRR 180
           NH ST CRTYPENHVQALLY GLVNQYNGYGSH+DNYNKEYSQRY  TTLDSFKQPKSRR
Sbjct: 121 NHPSTLCRTYPENHVQALLYLGLVNQYNGYGSHMDNYNKEYSQRYRGTTLDSFKQPKSRR 180

Query: 181 YVTNYPVYY-TYDLLK 196
           +VT+YPVYY +YDLLK
Sbjct: 181 HVTSYPVYYPSYDLLK 196

[Close]

BLAST of CSPI05G30740 vs. NCBI nr
Match: XP_008459563.1 (PREDICTED: RNA-binding protein 7-like isoform X1 [Cucumis melo] >XP_008459565.1 PREDICTED: RNA-binding protein 7-like isoform X1 [Cucumis melo])

HSP 1 Score: 355.5 bits (911), Expect = 2.9e-94
Identity = 182/196 (92.86%), Postives = 188/196 (95.92%), Query Frame = 0


Query: 1   MSGGSNACTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKDTGKPKGFAFAVYESEE 60
           MSGGSN+CTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKD+G PKGFAFAVYESEE
Sbjct: 1   MSGGSNSCTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKDSGIPKGFAFAVYESEE 60

Query: 61  IANYAVKLFSGLVSLHSRILKFAVSGQDKSSPTNSAITSSSNVSHKSRSHGYSNEISQYS 120
           IANYAVKLFSGLVSLHSRILKFAVSGQDKSSPTNSA+TSSSNVSHKSRSHGYSNEISQYS
Sbjct: 61  IANYAVKLFSGLVSLHSRILKFAVSGQDKSSPTNSAVTSSSNVSHKSRSHGYSNEISQYS 120

Query: 121 NHLSTSCRTYPENHVQALLYHGLVNQYNGYGSHLDNYNKEYSQRYHATTLDSFKQPKSRR 180
           NH STSCRTYPENHVQALLY GLVNQYNGY SH+DNYNKEYSQRY  TTLDSFKQPKSRR
Sbjct: 121 NHPSTSCRTYPENHVQALLYLGLVNQYNGYASHMDNYNKEYSQRYGGTTLDSFKQPKSRR 180

Query: 181 YVTNYPVYY-TYDLLK 196
            VT+YPVYY +YDLLK
Sbjct: 181 NVTSYPVYYPSYDLLK 196

[Close]

BLAST of CSPI05G30740 vs. NCBI nr
Match: XP_038890486.1 (RNA-binding protein 7-like [Benincasa hispida])

HSP 1 Score: 324.7 bits (831), Expect = 5.5e-85
Identity = 171/201 (85.07%), Postives = 185/201 (92.04%), Query Frame = 0


Query: 1   MSGGSNACTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKDTGKPKGFAFAVYESEE 60
           MSG SN CTVYVGNLDER+SDRVLYDILIQAGRVVDLHIPRDK++GKPKGFAF VYESEE
Sbjct: 1   MSGRSNGCTVYVGNLDERISDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFVVYESEE 60

Query: 61  IANYAVKLFSGLVSLHSRILKFAVSGQDKSSPTNSAITSSSNVSHKSRSH---GYSNEIS 120
           I NYAVKLFSGLV+L++R LKFAVSGQDKSSP++SAITSSSNVSHKSRSH   GYS EIS
Sbjct: 61  ITNYAVKLFSGLVTLYNRTLKFAVSGQDKSSPSSSAITSSSNVSHKSRSHIVLGYS-EIS 120

Query: 121 QYSNHLSTSCR--TYPENHVQALLYHGLVNQYNGYGSHLDNYNKEYSQRYHATTLDSFKQ 180
           QYS+HLSTSCR  TYPE+HV+ALLY GLVNQYNGYGSHLDNYNKEYSQRY  TTLDSF Q
Sbjct: 121 QYSSHLSTSCRFSTYPEDHVEALLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLDSFNQ 180

Query: 181 PKSRRYVTNYPVYY-TYDLLK 196
           PKSRR+VT+YPVYY +YDLLK
Sbjct: 181 PKSRRHVTSYPVYYHSYDLLK 200

[Close]

BLAST of CSPI05G30740 vs. NCBI nr
Match: XP_038890192.1 (RNA-binding protein 7-like isoform X1 [Benincasa hispida] >XP_038890193.1 RNA-binding protein 7-like isoform X1 [Benincasa hispida] >XP_038890194.1 RNA-binding protein 7-like isoform X1 [Benincasa hispida])

HSP 1 Score: 293.1 bits (749), Expect = 1.8e-75
Identity = 155/192 (80.73%), Postives = 169/192 (88.02%), Query Frame = 0


Query: 1   MSGGSNACTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKDTGKPKGFAFAVYESEE 60
           MSG SN CT+YVGN DERVS+RVLYDILIQAGRVVDLHIPRDK++GKPKGFAFA YESEE
Sbjct: 1   MSGRSNGCTIYVGNFDERVSERVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60

Query: 61  IANYAVKLFSGLVSLHSRILKFAVSGQDKSSPTNSAITSSSNVSHKSRSH---GYSNEIS 120
           IANYAVKLFSGLV+LH+R LKFAVSGQDK SP ++AITSSS +S+KSRS    GYSNEIS
Sbjct: 61  IANYAVKLFSGLVNLHNRTLKFAVSGQDKPSPGSNAITSSS-ISNKSRSQIFSGYSNEIS 120

Query: 121 QYSNHLSTSCR--TYPENHVQALLYHGLVNQYNGYGSHLDNYNKEYSQRYHATTLDSFKQ 180
           QYSN  STSCR  TYPENH++ALLY GLVNQYNGYGSHLDNYNKEYSQRY  TTLDS  Q
Sbjct: 121 QYSNRFSTSCRFTTYPENHLEALLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLDSLNQ 180

Query: 181 PKSRRYVTNYPV 188
           PKSRR  T++PV
Sbjct: 181 PKSRRRDTSFPV 191

[Close]

BLAST of CSPI05G30740 vs. TAIR 10
Match: AT4G10110.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 156.4 bits (394), Expect = 2.4e-38
Identity = 97/190 (51.05%), Postives = 125/190 (65.79%), Query Frame = 0


Query: 1   MSGGSNACTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKDTGKPKGFAFAVYESEE 60
           MSG SN CTVY+GN+DERVSDRVLYDI+IQAGRV+DLHIPRDK+T KPKGFAFA YE+EE
Sbjct: 1   MSGTSN-CTVYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEE 60

Query: 61  IANYAVKLFSGLVSLHSRILKFAVSGQDKSSPTNSAITSSSNVSHKSRSHGYSNE----- 120
           IA+YAVKLFSGLVSL++R LKFA+SGQDK        ++S+N  H++R    + E     
Sbjct: 61  IADYAVKLFSGLVSLYNRTLKFAISGQDKLQ------SNSANSGHRARPQSLAFEHSDRA 120

Query: 121 ----ISQYSNHLSTSCRTYPENHVQALLYHGLVNQYNGYGSHLDNYNKEYSQRYHATTLD 180
               + ++S+ L +     P ++ Q     G+ N     G+ L     EYS+R   + LD
Sbjct: 121 AYHHLERFSSQLISPPSPLPLDYTQEPPPPGVSN-----GASL-----EYSRRVLGSALD 173

Query: 181 SFKQPKSRRY 182
           S    + RRY
Sbjct: 181 SINHSRPRRY 173

[Close]

BLAST of CSPI05G30740 vs. TAIR 10
Match: AT2G18510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 72.4 bits (176), Expect = 4.5e-13
Identity = 32/83 (38.55%), Postives = 58/83 (69.88%), Query Frame = 0


Query: 9   TVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKDTGKPKGFAFAVYESEEIANYAVKL 68
           TVYVG LD ++S+ +L+++ +QAG VV++++P+D+ T   + + F  Y SEE A+YA+K+
Sbjct: 26  TVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKV 85

Query: 69  FSGLVSLHSRILKFAVSGQDKSS 92
            + ++ LH + ++   + QDK S
Sbjct: 86  LN-MIKLHGKPIRVNKASQDKKS 107

[Close]

BLAST of CSPI05G30740 vs. TAIR 10
Match: AT2G37220.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 56.2 bits (134), Expect = 3.4e-08
Identity = 26/70 (37.14%), Postives = 38/70 (54.29%), Query Frame = 0


Query: 2   SGGSNACTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKDTGKPKGFAFAVYESEEI 61
           SG  +   VYVGNL   V D  L  +  + G+VV+  +  D+D+G+ KGF F  Y+S + 
Sbjct: 198 SGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQE 257

Query: 62  ANYAVKLFSG 72
              A+K   G
Sbjct: 258 VQNAIKSLDG 267

[Close]

BLAST of CSPI05G30740 vs. TAIR 10
Match: AT3G47120.1 (RNA recognition motif (RRM)-containing protein )

HSP 1 Score: 50.8 bits (120), Expect = 1.4e-06
Identity = 33/97 (34.02%), Postives = 47/97 (48.45%), Query Frame = 0


Query: 6   NACTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKDTGKPKGFAFAVYESEEIANYA 65
           N+  VYVG +   +++  L  +  Q G +VD+++ RDK TGK KGFAF  YE +     A
Sbjct: 34  NSAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILA 93

Query: 66  VKLFSGLVSLHSRILKFAVSGQDKSSPTNSAITSSSN 103
           V   +G + L  R +K    G  K        T   N
Sbjct: 94  VDNLNGALVL-GRTIKVDHCGAYKKHEEEDEETRRQN 129

[Close]

BLAST of CSPI05G30740 vs. TAIR 10
Match: AT5G64200.1 (ortholog of human splicing factor SC35 )

HSP 1 Score: 48.9 bits (115), Expect = 5.4e-06
Identity = 33/106 (31.13%), Postives = 56/106 (52.83%), Query Frame = 0


Query: 5   SNACTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKDTGKPKGFAFAVYESEEIANY 64
           S+  ++ V N+  R +   LY +  + G+VVD+ IPRD+ TG  +GFAF  Y+ ++ A+ 
Sbjct: 13  SDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHK 72

Query: 65  AVKLFSG-LVSLHSRILKFAVSGQDKSSPTNSAITSSSNVSHKSRS 110
           AV+   G +V      ++FA  G +    +   +      S +SRS
Sbjct: 73  AVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRS 118

The following BLAST results are available for this feature:

BLAST of CSPI05G30740 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q15427	1.4e-11	36.84	Splicing factor 3B subunit 4 OS=Homo sapiens OX=9606 GN=SF3B4 PE=1 SV=1	[more]
Q8QZY9	1.4e-11	36.84	Splicing factor 3B subunit 4 OS=Mus musculus OX=10090 GN=Sf3b4 PE=1 SV=1	[more]
Q6AYL5	1.4e-11	36.84	Splicing factor 3B subunit 4 OS=Rattus norvegicus OX=10116 GN=Sf3b4 PE=2 SV=1	[more]
Q09442	3.2e-11	39.73	Splicing factor 3B subunit 4 OS=Caenorhabditis elegans OX=6239 GN=sap-49 PE=1 SV...	[more]
O14102	7.8e-10	36.47	Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe (strain 972 / ATC...	[more]

BLAST of CSPI05G30740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXV1	1.3e-103	99.49	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G648670 PE=4 SV=1	[more]
A0A5A7TCE4	3.3e-96	93.37	RNA-binding protein 7-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3CBQ3	1.4e-94	92.86	RNA-binding protein 7-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498659 PE...	[more]
A0A6J1I7S0	1.4e-73	76.92	RNA-binding protein 7-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11147206...	[more]
A0A6J1EX61	1.4e-73	74.50	RNA-binding protein 7 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111438905 P...	[more]

BLAST of CSPI05G30740 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8648991.1	9.6e-98	98.93	hypothetical protein Csa_008725 [Cucumis sativus]	[more]
KAA0039301.1	6.9e-96	93.37	RNA-binding protein 7-like isoform X1 [Cucumis melo var. makuwa] >TYK00485.1 RNA...	[more]
XP_008459563.1	2.9e-94	92.86	PREDICTED: RNA-binding protein 7-like isoform X1 [Cucumis melo] >XP_008459565.1 ...	[more]
XP_038890486.1	5.5e-85	85.07	RNA-binding protein 7-like [Benincasa hispida]	[more]
XP_038890192.1	1.8e-75	80.73	RNA-binding protein 7-like isoform X1 [Benincasa hispida] >XP_038890193.1 RNA-bi...	[more]

BLAST of CSPI05G30740 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G10110.1	2.4e-38	51.05	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G18510.1	4.5e-13	38.55	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G37220.1	3.4e-08	37.14	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G47120.1	1.4e-06	34.02	RNA recognition motif (RRM)-containing protein	[more]
AT5G64200.1	5.4e-06	31.13	ortholog of human splicing factor SC35	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 9..83 e-value: 5.9E-17 score: 72.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 10..71 e-value: 1.1E-13 score: 50.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 8..87 score: 14.197654
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 4..97 e-value: 5.1E-19 score: 70.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..112
None	No IPR available	PANTHER	PTHR13798:SF11	OS01G0876500 PROTEIN	coord: 89..131 coord: 1..92
None	No IPR available	PANTHER	PTHR13798	RNA BINDING MOTIF RBM PROTEIN -RELATED	coord: 89..131 coord: 1..92
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 6..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G30740.2	CSPI05G30740.2	mRNA
CSPI05G30740.1	CSPI05G30740.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding