CSPI05G28840 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI05G28840
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Transcription factor protein
Location	Chr5: 27216986 .. 27218356 (-)
RNA-Seq Expression	CSPI05G28840
Synteny	CSPI05G28840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAAGAAAAAAAAACCAACCCAACTCCCCCACTCCTTTCTCTAAATCAATTGTCTTCTTCACATCCAACATCTCCCATCTCTCTCTCTCTCTCTCCTAAGTTTATTTTTTCCTCTGTGGTCCTTCCCTCTTTATAACTCTCTTATCACTTCCCCCCCTTCTTCCTTCCTTCAAACCTTCCTCTCTTCTTCTTCTTCTTCTTCTTTCTCCACTTTCCATAACCACTTTCCCTCTCTTCATCCCTTTCTTTCCAAAACAATAACTTAATTCAACATCAATTTTACAACATGTCTAGCAGAAGATCAAGGCAGTCAAGTGCTTCTAGAATCAGTGACGACCAAATCATTGAACTCGTTTCCAAGCTTCGCCAACTCGTCCCCGAGATTCGCCATCGCCGCCCCGACAAGGTACTTATCTCTATGCTCAAAATTTTTAATGCTACAAAATGACAAGGATGCTATATAAATATGTGTTAAACAACGTAGTAGTTGAGACGACCCAGTACACCTACCCATACTCTGTTCTATTTCTCTAATTTCGTGTAAGGGTGTAGCACATTTTAAGCTTTTAACCTAGATGAAATCTTGGCAATAAGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTTTTTTTTTAAGAAAACTCAACTTTTAAAAAACTTAACTTGACCCGGATATCATGGGAAGAAAATACTAAGCAAGTTTTTCTTATTTTTTAAAGGAGAATTTATAGAAAAATAAATAAGTAAAAAAGAAAGTTAATGTTGCTTTAAGCTAAAGATTCTCATTGTCTTGATGGGGGGTTCACATTTGACTCTATTATACACTTAATTCATGCCACCAATTGATAATGTACGGTCTAAAGAAACTTCATTGGTCTAGTCAATTAAAGAATTTAACAAATTAACATTAAGCTAAGTAAAGCAATTTATTAAAAAACATCTTTAATTTTCAATTGGATGTGCCATAAACATGATTAAATCAAACCCACTTGATTATTCAAAATAGGCAAAACAAACCATACAAAAGTACAACCAAATGTTTGCTTTTTTGTTTAATTTCATATTTGACTTTATTATATATTATTCTTTATTTTAATTAATTAGGTTTCTTCTTCTTCTACTTATTATTATTTTCTTTTGTCTTTTCTTCAGGTATCAGCTTCAAAAGTCCTTCAAGAGACTTGCAATTACATTAGAAATTTGCATAGGGAAGTTGATGACTTAAGTGAAAGACTCTCTCAACTTCTATCAACTATAGATTCTGATAGTGCAGAGGCAGCCATAATTAGGAGCTTAATTATGCAATAGGATCAAGAACAAGAACAAGAGCGACAAAGCTATTGGGTTTGGTAATCATATATATATATATAT

mRNA sequence

GAAAAGAAAAAAAAACCAACCCAACTCCCCCACTCCTTTCTCTAAATCAATTGTCTTCTTCACATCCAACATCTCCCATCTCTCTCTCTCTCTCTCCTAAGTTTATTTTTTCCTCTGTGGTCCTTCCCTCTTTATAACTCTCTTATCACTTCCCCCCCTTCTTCCTTCCTTCAAACCTTCCTCTCTTCTTCTTCTTCTTCTTCTTTCTCCACTTTCCATAACCACTTTCCCTCTCTTCATCCCTTTCTTTCCAAAACAATAACTTAATTCAACATCAATTTTACAACATGTCTAGCAGAAGATCAAGGCAGTCAAGTGCTTCTAGAATCAGTGACGACCAAATCATTGAACTCGTTTCCAAGCTTCGCCAACTCGTCCCCGAGATTCGCCATCGCCGCCCCGACAAGGTATCAGCTTCAAAAGTCCTTCAAGAGACTTGCAATTACATTAGAAATTTGCATAGGGAAGTTGATGACTTAAGTGAAAGACTCTCTCAACTTCTATCAACTATAGATTCTGATAGTGCAGAGGCAGCCATAATTAGGAGCTTAATTATGCAATAGGATCAAGAACAAGAACAAGAGCGACAAAGCTATTGGGTTTGGTAATCATATATATATATATAT

Coding sequence (CDS)

ATGTCTAGCAGAAGATCAAGGCAGTCAAGTGCTTCTAGAATCAGTGACGACCAAATCATTGAACTCGTTTCCAAGCTTCGCCAACTCGTCCCCGAGATTCGCCATCGCCGCCCCGACAAGGTATCAGCTTCAAAAGTCCTTCAAGAGACTTGCAATTACATTAGAAATTTGCATAGGGAAGTTGATGACTTAAGTGAAAGACTCTCTCAACTTCTATCAACTATAGATTCTGATAGTGCAGAGGCAGCCATAATTAGGAGCTTAATTATGCAATAG

Protein sequence

MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ*

Homology

[Close]

BLAST of CSPI05G28840 vs. ExPASy Swiss-Prot
Match: Q8GW32 (Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.2e-29
Identity = 71/92 (77.17%), Postives = 82/92 (89.13%), Query Frame = 0


Query: 1  MSSR---RSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNL 60
          MSSR   RSRQS +SRISDDQI +LVSKL+ L+PE+R RR DKVSASKVLQETCNYIRNL
Sbjct: 1  MSSRRSSRSRQSGSSRISDDQISDLVSKLQHLIPELRRRRSDKVSASKVLQETCNYIRNL 60

Query: 61 HREVDDLSERLSQLLSTIDSDSAEAAIIRSLI 90
          HREVDDLS+RLS+LL++ D +SAEAAIIRSL+
Sbjct: 61 HREVDDLSDRLSELLASTDDNSAEAAIIRSLL 92

[Close]

BLAST of CSPI05G28840 vs. ExPASy Swiss-Prot
Match: Q9LJX1 (Transcription factor PRE5 OS=Arabidopsis thaliana OX=3702 GN=PRE5 PE=1 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 7.9e-29
Identity = 71/92 (77.17%), Postives = 82/92 (89.13%), Query Frame = 0


Query: 1  MSSRRSRQ-SSASRISDDQIIELVSKLRQLVPEI-RHRRPDKVSASKVLQETCNYIRNLH 60
          MS+RRSRQ S+ASRISDDQ+I+LVSKLRQ +PEI   RR DKVSASKVLQETCNYIR LH
Sbjct: 1  MSNRRSRQTSNASRISDDQMIDLVSKLRQFLPEIHERRRSDKVSASKVLQETCNYIRKLH 60

Query: 61 REVDDLSERLSQLLSTIDSDSAEAAIIRSLIM 91
          REVD+LS+RLSQLL ++D DS EAA+IRSL+M
Sbjct: 61 REVDNLSDRLSQLLDSVDEDSPEAAVIRSLLM 92

[Close]

BLAST of CSPI05G28840 vs. ExPASy Swiss-Prot
Match: Q9FLE9 (Transcription factor PRE1 OS=Arabidopsis thaliana OX=3702 GN=PRE1 PE=1 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 3.9e-28
Identity = 70/92 (76.09%), Postives = 83/92 (90.22%), Query Frame = 0


Query: 1  MSSRRSRQ-SSASRISDDQIIELVSKLRQLVPEI-RHRRPDKVSASKVLQETCNYIRNLH 60
          MS+RRSRQ SSA RISD+Q+I+LVSKLRQ++PEI + RR DK SASKVLQETCNYIRNL+
Sbjct: 1  MSNRRSRQSSSAPRISDNQMIDLVSKLRQILPEIGQRRRSDKASASKVLQETCNYIRNLN 60

Query: 61 REVDDLSERLSQLLSTIDSDSAEAAIIRSLIM 91
          REVD+LSERLSQLL ++D DS EAA+IRSL+M
Sbjct: 61 REVDNLSERLSQLLESVDEDSPEAAVIRSLLM 92

[Close]

BLAST of CSPI05G28840 vs. ExPASy Swiss-Prot
Match: Q9LXG5 (Transcription factor PRE2 OS=Arabidopsis thaliana OX=3702 GN=PRE2 PE=1 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.1e-25
Identity = 66/90 (73.33%), Postives = 80/90 (88.89%), Query Frame = 0


Query: 2  SSRRSRQ-SSASRISDDQIIELVSKLRQLVPEIR-HRRPDKVSASKVLQETCNYIRNLHR 61
          SSRRSRQ SS+SRISDDQI +L+SKLRQ +PEIR +RR + VSASKVLQETCNYIRNL++
Sbjct: 3  SSRRSRQASSSSRISDDQITDLISKLRQSIPEIRQNRRSNTVSASKVLQETCNYIRNLNK 62

Query: 62 EVDDLSERLSQLLSTIDSDSAEAAIIRSLI 90
          E DDLS+RL+QLL +ID +S +AA+IRSLI
Sbjct: 63 EADDLSDRLTQLLESIDPNSPQAAVIRSLI 92

[Close]

BLAST of CSPI05G28840 vs. ExPASy Swiss-Prot
Match: B8APB5 (Transcription factor ILI6 OS=Oryza sativa subsp. indica OX=39946 GN=ILI6 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.1e-25
Identity = 64/92 (69.57%), Postives = 79/92 (85.87%), Query Frame = 0


Query: 1  MSSR--RSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLH 60
          MSSR  RSRQS +SRI+D+QI +LVSKL+ L+PE R R  D+V +S+VLQETCNYIR+LH
Sbjct: 1  MSSRRSRSRQSGSSRITDEQISDLVSKLQDLLPEARLRSNDRVPSSRVLQETCNYIRSLH 60

Query: 61 REVDDLSERLSQLLSTIDSDSAEAAIIRSLIM 91
          +EVDDLSERLS+LL+T D  SA+AAIIRSL+M
Sbjct: 61 QEVDDLSERLSELLATSDMSSAQAAIIRSLLM 92

[Close]

BLAST of CSPI05G28840 vs. ExPASy TrEMBL
Match: A0A5A7T970 (Transcription factor PRE6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold33818G00010 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.5e-38
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHRE 60
          MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHRE
Sbjct: 1  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHRE 60

Query: 61 VDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ 92
          VDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ
Sbjct: 61 VDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ 91

[Close]

BLAST of CSPI05G28840 vs. ExPASy TrEMBL
Match: A0A0A0KXB9 (Transcription regulator OS=Cucumis sativus OX=3659 GN=Csa_5G635950 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.5e-38
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHRE 60
          MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHRE
Sbjct: 1  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHRE 60

Query: 61 VDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ 92
          VDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ
Sbjct: 61 VDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ 91

[Close]

BLAST of CSPI05G28840 vs. ExPASy TrEMBL
Match: A0A1S3CB29 (transcription factor PRE6 OS=Cucumis melo OX=3656 GN=LOC103498476 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.5e-38
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHRE 60
          MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHRE
Sbjct: 1  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHRE 60

Query: 61 VDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ 92
          VDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ
Sbjct: 61 VDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ 91

[Close]

BLAST of CSPI05G28840 vs. ExPASy TrEMBL
Match: A0A6J1BY51 (transcription factor PRE6 OS=Momordica charantia OX=3673 GN=LOC111006522 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 4.0e-36
Identity = 87/91 (95.60%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 1  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHRE 60
          MSSRRSRQS  SRISDDQIIELVSKLRQLVPEIRHRR DKVSASKVLQETCNYIRNLHRE
Sbjct: 1  MSSRRSRQSGGSRISDDQIIELVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHRE 60

Query: 61 VDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ 92
          VDDLSERLSQLLSTID+DSAEAAIIRSLIMQ
Sbjct: 61 VDDLSERLSQLLSTIDADSAEAAIIRSLIMQ 91

[Close]

BLAST of CSPI05G28840 vs. ExPASy TrEMBL
Match: A0A6J1FLR3 (transcription factor PRE6-like OS=Cucurbita moschata OX=3662 GN=LOC111445367 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.2e-35
Identity = 85/91 (93.41%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 1  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHRE 60
          MS+RRSR S ASRISDDQII+L+SKLRQLVPEIRHRRPDKVSASKVL ETCNYIRNLHRE
Sbjct: 1  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHRE 60

Query: 61 VDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ 92
          VDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ
Sbjct: 61 VDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ 91

[Close]

BLAST of CSPI05G28840 vs. NCBI nr
Match: XP_004151201.2 (transcription factor PRE6 [Cucumis sativus] >XP_008459306.1 PREDICTED: transcription factor PRE6 [Cucumis melo] >KAA0038157.1 transcription factor PRE6 [Cucumis melo var. makuwa] >KGN52451.1 hypothetical protein Csa_009099 [Cucumis sativus] >TYK02197.1 transcription factor PRE6 [Cucumis melo var. makuwa])

HSP 1 Score: 167.5 bits (423), Expect = 5.2e-38
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHRE 60
          MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHRE
Sbjct: 1  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHRE 60

Query: 61 VDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ 92
          VDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ
Sbjct: 61 VDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ 91

[Close]

BLAST of CSPI05G28840 vs. NCBI nr
Match: XP_038890645.1 (LOW QUALITY PROTEIN: transcription factor PRE6 [Benincasa hispida])

HSP 1 Score: 165.2 bits (417), Expect = 2.6e-37
Identity = 89/91 (97.80%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHRE 60
          MSSRRSRQSSASRI+DDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHRE
Sbjct: 1  MSSRRSRQSSASRITDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHRE 60

Query: 61 VDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ 92
          VDDLSERLSQLLSTID+DSAEAAIIRSLIMQ
Sbjct: 61 VDDLSERLSQLLSTIDADSAEAAIIRSLIMQ 91

[Close]

BLAST of CSPI05G28840 vs. NCBI nr
Match: XP_022134204.1 (transcription factor PRE6 [Momordica charantia])

HSP 1 Score: 160.2 bits (404), Expect = 8.4e-36
Identity = 87/91 (95.60%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 1  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHRE 60
          MSSRRSRQS  SRISDDQIIELVSKLRQLVPEIRHRR DKVSASKVLQETCNYIRNLHRE
Sbjct: 1  MSSRRSRQSGGSRISDDQIIELVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHRE 60

Query: 61 VDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ 92
          VDDLSERLSQLLSTID+DSAEAAIIRSLIMQ
Sbjct: 61 VDDLSERLSQLLSTIDADSAEAAIIRSLIMQ 91

[Close]

BLAST of CSPI05G28840 vs. NCBI nr
Match: XP_022939473.1 (transcription factor PRE6-like [Cucurbita moschata] >XP_023551375.1 transcription factor PRE6-like [Cucurbita pepo subsp. pepo] >KAG6578591.1 Transcription factor PRE5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 158.7 bits (400), Expect = 2.4e-35
Identity = 85/91 (93.41%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 1  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHRE 60
          MS+RRSR S ASRISDDQII+L+SKLRQLVPEIRHRRPDKVSASKVL ETCNYIRNLHRE
Sbjct: 1  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHRE 60

Query: 61 VDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ 92
          VDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ
Sbjct: 61 VDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ 91

[Close]

BLAST of CSPI05G28840 vs. NCBI nr
Match: XP_022993701.1 (transcription factor PRE6-like [Cucurbita maxima])

HSP 1 Score: 157.9 bits (398), Expect = 4.1e-35
Identity = 85/91 (93.41%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 1  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHRE 60
          MS+RRSR S  SRISDDQIIEL+SKLRQLVPEIRHRRPDKVSASKVL ETCNYIRNLHRE
Sbjct: 1  MSTRRSRHSGPSRISDDQIIELLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHRE 60

Query: 61 VDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ 92
          VDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ
Sbjct: 61 VDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ 91

[Close]

BLAST of CSPI05G28840 vs. TAIR 10
Match: AT1G26945.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 130.2 bits (326), Expect = 8.6e-31
Identity = 71/92 (77.17%), Postives = 82/92 (89.13%), Query Frame = 0


Query: 1  MSSR---RSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNL 60
          MSSR   RSRQS +SRISDDQI +LVSKL+ L+PE+R RR DKVSASKVLQETCNYIRNL
Sbjct: 1  MSSRRSSRSRQSGSSRISDDQISDLVSKLQHLIPELRRRRSDKVSASKVLQETCNYIRNL 60

Query: 61 HREVDDLSERLSQLLSTIDSDSAEAAIIRSLI 90
          HREVDDLS+RLS+LL++ D +SAEAAIIRSL+
Sbjct: 61 HREVDDLSDRLSELLASTDDNSAEAAIIRSLL 92

[Close]

BLAST of CSPI05G28840 vs. TAIR 10
Match: AT3G28857.1 (basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 127.5 bits (319), Expect = 5.6e-30
Identity = 71/92 (77.17%), Postives = 82/92 (89.13%), Query Frame = 0


Query: 1  MSSRRSRQ-SSASRISDDQIIELVSKLRQLVPEI-RHRRPDKVSASKVLQETCNYIRNLH 60
          MS+RRSRQ S+ASRISDDQ+I+LVSKLRQ +PEI   RR DKVSASKVLQETCNYIR LH
Sbjct: 1  MSNRRSRQTSNASRISDDQMIDLVSKLRQFLPEIHERRRSDKVSASKVLQETCNYIRKLH 60

Query: 61 REVDDLSERLSQLLSTIDSDSAEAAIIRSLIM 91
          REVD+LS+RLSQLL ++D DS EAA+IRSL+M
Sbjct: 61 REVDNLSDRLSQLLDSVDEDSPEAAVIRSLLM 92

[Close]

BLAST of CSPI05G28840 vs. TAIR 10
Match: AT5G39860.1 (basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 125.2 bits (313), Expect = 2.8e-29
Identity = 70/92 (76.09%), Postives = 83/92 (90.22%), Query Frame = 0


Query: 1  MSSRRSRQ-SSASRISDDQIIELVSKLRQLVPEI-RHRRPDKVSASKVLQETCNYIRNLH 60
          MS+RRSRQ SSA RISD+Q+I+LVSKLRQ++PEI + RR DK SASKVLQETCNYIRNL+
Sbjct: 1  MSNRRSRQSSSAPRISDNQMIDLVSKLRQILPEIGQRRRSDKASASKVLQETCNYIRNLN 60

Query: 61 REVDDLSERLSQLLSTIDSDSAEAAIIRSLIM 91
          REVD+LSERLSQLL ++D DS EAA+IRSL+M
Sbjct: 61 REVDNLSERLSQLLESVDEDSPEAAVIRSLLM 92

[Close]

BLAST of CSPI05G28840 vs. TAIR 10
Match: AT5G15160.1 (BANQUO 2 )

HSP 1 Score: 117.1 bits (292), Expect = 7.6e-27
Identity = 66/90 (73.33%), Postives = 80/90 (88.89%), Query Frame = 0


Query: 2  SSRRSRQ-SSASRISDDQIIELVSKLRQLVPEIR-HRRPDKVSASKVLQETCNYIRNLHR 61
          SSRRSRQ SS+SRISDDQI +L+SKLRQ +PEIR +RR + VSASKVLQETCNYIRNL++
Sbjct: 3  SSRRSRQASSSSRISDDQITDLISKLRQSIPEIRQNRRSNTVSASKVLQETCNYIRNLNK 62

Query: 62 EVDDLSERLSQLLSTIDSDSAEAAIIRSLI 90
          E DDLS+RL+QLL +ID +S +AA+IRSLI
Sbjct: 63 EADDLSDRLTQLLESIDPNSPQAAVIRSLI 92

[Close]

BLAST of CSPI05G28840 vs. TAIR 10
Match: AT1G74500.1 (activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 )

HSP 1 Score: 110.5 bits (275), Expect = 7.1e-25
Identity = 64/95 (67.37%), Postives = 80/95 (84.21%), Query Frame = 0


Query: 1  MSSRRSR---QSSASRISDDQIIELVSKLRQLVPEIR-HRRPDKVSASKVLQETCNYIRN 60
          MS RRSR    S  SRIS+DQI +L+ KL+QL+PE+R  RR DKVSA++VLQ+TCNYIRN
Sbjct: 1  MSGRRSRSRQSSGTSRISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRN 60

Query: 61 LHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ 92
          LHREVDDLSERLS+LL+  +SD+A+AA+IRSL+ Q
Sbjct: 61 LHREVDDLSERLSELLA--NSDTAQAALIRSLLTQ 93

The following BLAST results are available for this feature:

BLAST of CSPI05G28840 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GW32	1.2e-29	77.17	Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1	[more]
Q9LJX1	7.9e-29	77.17	Transcription factor PRE5 OS=Arabidopsis thaliana OX=3702 GN=PRE5 PE=1 SV=1	[more]
Q9FLE9	3.9e-28	76.09	Transcription factor PRE1 OS=Arabidopsis thaliana OX=3702 GN=PRE1 PE=1 SV=1	[more]
Q9LXG5	1.1e-25	73.33	Transcription factor PRE2 OS=Arabidopsis thaliana OX=3702 GN=PRE2 PE=1 SV=1	[more]
B8APB5	3.1e-25	69.57	Transcription factor ILI6 OS=Oryza sativa subsp. indica OX=39946 GN=ILI6 PE=3 SV...	[more]

BLAST of CSPI05G28840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T970	2.5e-38	100.00	Transcription factor PRE6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A0A0KXB9	2.5e-38	100.00	Transcription regulator OS=Cucumis sativus OX=3659 GN=Csa_5G635950 PE=4 SV=1	[more]
A0A1S3CB29	2.5e-38	100.00	transcription factor PRE6 OS=Cucumis melo OX=3656 GN=LOC103498476 PE=4 SV=1	[more]
A0A6J1BY51	4.0e-36	95.60	transcription factor PRE6 OS=Momordica charantia OX=3673 GN=LOC111006522 PE=4 SV...	[more]
A0A6J1FLR3	1.2e-35	93.41	transcription factor PRE6-like OS=Cucurbita moschata OX=3662 GN=LOC111445367 PE=...	[more]

BLAST of CSPI05G28840 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004151201.2	5.2e-38	100.00	transcription factor PRE6 [Cucumis sativus] >XP_008459306.1 PREDICTED: transcrip...	[more]
XP_038890645.1	2.6e-37	97.80	LOW QUALITY PROTEIN: transcription factor PRE6 [Benincasa hispida]	[more]
XP_022134204.1	8.4e-36	95.60	transcription factor PRE6 [Momordica charantia]	[more]
XP_022939473.1	2.4e-35	93.41	transcription factor PRE6-like [Cucurbita moschata] >XP_023551375.1 transcriptio...	[more]
XP_022993701.1	4.1e-35	93.41	transcription factor PRE6-like [Cucurbita maxima]	[more]

BLAST of CSPI05G28840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26945.1	8.6e-31	77.17	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G28857.1	5.6e-30	77.17	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]
AT5G39860.1	2.8e-29	76.09	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]
AT5G15160.1	7.6e-27	73.33	BANQUO 2	[more]
AT1G74500.1	7.1e-25	67.37	activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 54..74
None	No IPR available	PANTHER	PTHR46446:SF28	TRANSCRIPTION REGULATOR	coord: 1..90
None	No IPR available	CDD	cd11442	bHLH_AtPRE_like	coord: 16..74 e-value: 1.02347E-19 score: 73.4915
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 1..86 e-value: 4.3E-9 score: 38.1
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 7..75
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 18..58 e-value: 6.7E-5 score: 22.8
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 3..57 score: 10.918392
IPR044293	Transcription factor PRE	PANTHER	PTHR46446	TRANSCRIPTION FACTOR PRE	coord: 1..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G28840.1	CSPI05G28840.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0040008	regulation of growth
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity