CSPI05G28630 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI05G28630
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionCLAVATA3/ESR (CLE)-related protein 25
LocationChr5: 26992453 .. 26994590 (-)
RNA-Seq ExpressionCSPI05G28630
SyntenyCSPI05G28630
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGCTGATGAAATAGCAGAGACATTCAAAATGGACTTTCTCGATCTCCTTCAGGTTAGAAATGATTTCACTGATTATACAGCATTTGGTCTAATTGGGATTAACACTAATTTTGGTCTAATAGGTGAAGGTTTGGCTATGCCTCGTCTTTTACAAACTTGGTGTTAACTGGTAAGTTGTCGTCAGAGTTTTATGAGATATTGAGGTCCCCCAATTCCCCTTTTGTAGCTGTGGGAAAATGCAGAAACTAAGGCAAAGAAAGAGGAGCTGTTGGACACATTATTCCAGAATATAAAGTGACATAAATAACTACTTTTCTGTGTTTTAAAATCAGATTCCTTCTCTCTCTTCCCACGCGAACACAAAGTACAGTTTTTACTGATACAGTCTTTAAATACAAACAAAACAGCCTTACAACCCGCCAAGACCTCAGCCAACCCAATTAGCTTTCTATCTCTCTTCTTTCTTCTTTTTTCTTTCTTCTTTCTTCTTTCTTCTTTCTTCTTTCTTAGTCCATAGCTATCCCTCTCTTCCCTTCCATACCCTGAAATGTCTGATTTTAGTCATTTCTGTGTTTCTGTTCTGAATGGACGATGACCTTGTTGGTCCTGTGAGATAAGGAAAAGGGTTTTTGGTCTTTGGGTGTAATGGAGAGTAAGTGTAGTTTTTTGAAGTCTCTGTTTGGAGCTTTTCTCTTTCTTGGTATCATTTGGTTCTCTTTTATTGGAGTGATTGATAATGCTAGCCTAGCATCCAGAAGAGAGACAGACATGCAGTGGAAGCTAATTGGAAGAGAGAAGCATTTCTTTCATTGGCATTCTGATTTTTATTCTGTCAGCAAGAGAAGAGTACCAAATGGACCTGATCCAATCCATAACAGGTACTCAATTCTTGCTTCTTCTAATTTACTACTACATTTACACATATGTTTACCTAATTTTTCCTTTTTTTCCCAAGTGTCTCTTTCTCTTTCTTTTAATCTTTAATCTACTAAACTTGGTTGTTGGTGGGTTTTACGATATCTCTACAATTCTACAAAATTGTATCCATATATAATCTTGTTCTCAGAAAAGGAAAATTAACACAAAGAACTTGACTGCCCAAACTTCACTTACACGGAAGATAAAGGGAATGAAAATTCATTAGTAAATTTATCTAACTGTTACACCATTGCTTTTATCTCTTCCAATAGTCGTTATTAGTTTCCTCTTTATGTACTACAAATTGTTAAGCATGGAACAGAATTCAGCTTCAGATTCGACCATTTGAACATTTCAAAATAGAGTAATGCTCTGCCCTCCACACAGTTTGCTTACTTTTCTTTTGTTCGTTTTTGGCAACTTGAGTTAGTAAAAAGAGAAGCAGGGAACTGTTTCAATTGAGATTTGTTGAAGTTGATGACAGTCACTTTTTTTTTTTCCAAAATAAAAGCGAACGAAAAAAGAACAAAACTTCTTTTTTATCACCCTTTCTCTTATTTTTATGAGCCATTAAAGGCATTGGGGCAAGATCTTGACCACTTTAGTCTATAAGCTTGAGATTATAGATATAGGTAACTTACATAACAACATTTGTTTGTCTTTGCTACAAAACCATAATTAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATAAGATTGCCTAATGAATTTTATTGCTTATATAAATGTGATTTCAGGAGAGTTGAGAATTCTAGACAACCACCAATTCGAGTCTAAGCAAAATGAAGGAGATATATGAGGTGGAGAAGATGAGAAATGAACAGTTTTTTCTTTTTTACCCTTCCTTCTTTCATTACATGTAAATTGTTAATTATTTTTATGGTGTCCATCAAGGATAGATCGTGCATTGAGACTTTTGTCCCCTAAAGTACTGACATTGCAACTGTTCTTAGTGGGTTTTTGGGGGTAAAAAGAGATTTTGGATAACTTTCCCAGAAAATTTTCAGTTCTTGCTGCTCATCATTTATTTGATCTCAGATGCCAAGTGTTTGTTTCCTCGGAATTTGAAGATTATTATATATTGTTTCTTCTCC

mRNA sequence

CGCTGATGAAATAGCAGAGACATTCAAAATGGACTTTCTCGATCTCCTTCAGGTTAGAAATGATTTCACTGATTATACAGCATTTGGTCTAATTGGGATTAACACTAATTTTGGTCTAATAGGTGAAGGTTTGGCTATGCCTCGTCTTTTACAAACTTGGTGTTAACTGGTAAGTTGTCGTCAGAGTTTTATGAGATATTGAGGTCCCCCAATTCCCCTTTTGTAGCTGTGGGAAAATGCAGAAACTAAGGCAAAGAAAGAGGAGCTGTTGGACACATTATTCCAGAATATAAAGTGACATAAATAACTACTTTTCTGTGTTTTAAAATCAGATTCCTTCTCTCTCTTCCCACGCGAACACAAAGTACAGTTTTTACTGATACAGTCTTTAAATACAAACAAAACAGCCTTACAACCCGCCAAGACCTCAGCCAACCCAATTAGCTTTCTATCTCTCTTCTTTCTTCTTTTTTCTTTCTTCTTTCTTCTTTCTTCTTTCTTCTTTCTTAGTCCATAGCTATCCCTCTCTTCCCTTCCATACCCTGAAATGTCTGATTTTAGTCATTTCTGTGTTTCTGTTCTGAATGGACGATGACCTTGTTGGTCCTGTGAGATAAGGAAAAGGGTTTTTGGTCTTTGGGTGTAATGGAGAGTAAGTGTAGTTTTTTGAAGTCTCTGTTTGGAGCTTTTCTCTTTCTTGGTATCATTTGGTTCTCTTTTATTGGAGTGATTGATAATGCTAGCCTAGCATCCAGAAGAGAGACAGACATGCAGTGGAAGCTAATTGGAAGAGAGAAGCATTTCTTTCATTGGCATTCTGATTTTTATTCTGTCAGCAAGAGAAGAGTACCAAATGGACCTGATCCAATCCATAACAGGAGAGTTGAGAATTCTAGACAACCACCAATTCGAGTCTAAGCAAAATGAAGGAGATATATGAGGTGGAGAAGATGAGAAATGAACAGTTTTTTCTTTTTTACCCTTCCTTCTTTCATTACATGTAAATTGTTAATTATTTTTATGGTGTCCATCAAGGATAGATCGTGCATTGAGACTTTTGTCCCCTAAAGTACTGACATTGCAACTGTTCTTAGTGGGTTTTTGGGGGTAAAAAGAGATTTTGGATAACTTTCCCAGAAAATTTTCAGTTCTTGCTGCTCATCATTTATTTGATCTCAGATGCCAAGTGTTTGTTTCCTCGGAATTTGAAGATTATTATATATTGTTTCTTCTCC

Coding sequence (CDS)

ATGGAGAGTAAGTGTAGTTTTTTGAAGTCTCTGTTTGGAGCTTTTCTCTTTCTTGGTATCATTTGGTTCTCTTTTATTGGAGTGATTGATAATGCTAGCCTAGCATCCAGAAGAGAGACAGACATGCAGTGGAAGCTAATTGGAAGAGAGAAGCATTTCTTTCATTGGCATTCTGATTTTTATTCTGTCAGCAAGAGAAGAGTACCAAATGGACCTGATCCAATCCATAACAGGAGAGTTGAGAATTCTAGACAACCACCAATTCGAGTCTAA

Protein sequence

MESKCSFLKSLFGAFLFLGIIWFSFIGVIDNASLASRRETDMQWKLIGREKHFFHWHSDFYSVSKRRVPNGPDPIHNRRVENSRQPPIRV*
Homology
BLAST of CSPI05G28630 vs. ExPASy Swiss-Prot
Match: Q8LFL4 (CLAVATA3/ESR (CLE)-related protein 25 OS=Arabidopsis thaliana OX=3702 GN=CLE25 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.0e-09
Identity = 33/81 (40.74%), Postives = 47/81 (58.02%), Query Frame = 0

Query: 8  LKSLFGAFLFLGIIWFSFIGVIDN-ASLASRRETDMQWKLIGREKHFFHWHSDFYSVSKR 67
          +++L G    LG+I F  +G++ N A      E     +  G++ + FH       VSKR
Sbjct: 6  IRALVGVIASLGLIVFLLVGILANSAPSVPSSENVKTLRFSGKDVNLFH-------VSKR 65

Query: 68 RVPNGPDPIHNRRVENSRQPP 88
          +VPNGPDPIHNR+ E SR+PP
Sbjct: 66 KVPNGPDPIHNRKAETSRRPP 79

BLAST of CSPI05G28630 vs. ExPASy TrEMBL
Match: A0A0A0KS32 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G633230 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.6e-45
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0

Query: 1  MESKCSFLKSLFGAFLFLGIIWFSFIGVIDNASLASRRETDMQWKLIGREKHFFHWHSDF 60
          MESKCSFLKSLFGAFLFLGIIWFSFIGVIDNASLASRRETDMQWKLIGREKHFFHWHSDF
Sbjct: 1  MESKCSFLKSLFGAFLFLGIIWFSFIGVIDNASLASRRETDMQWKLIGREKHFFHWHSDF 60

Query: 61 YSVSKRRVPNGPDPIHNRRVENSRQPPIRV 91
          YSVSKRRVPNGPDPIHNRRVENSRQPPIRV
Sbjct: 61 YSVSKRRVPNGPDPIHNRRVENSRQPPIRV 90

BLAST of CSPI05G28630 vs. ExPASy TrEMBL
Match: A0A6J1HAQ4 (uncharacterized protein LOC111461653 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111461653 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 4.1e-25
Identity = 55/63 (87.30%), Postives = 58/63 (92.06%), Query Frame = 0

Query: 27  GVIDNASLASRRETDMQWKLIGREKHFFHWHSDFYSVSKRRVPNGPDPIHNRRVENSRQP 86
           G IDNAS ASRR TDMQWK+IG EKH FHWHSDFYSVSKRRVPNGPDPIHNRRVENS+QP
Sbjct: 50  GGIDNASPASRRATDMQWKVIGSEKHVFHWHSDFYSVSKRRVPNGPDPIHNRRVENSKQP 109

Query: 87  PIR 90
           P+R
Sbjct: 110 PVR 112

BLAST of CSPI05G28630 vs. ExPASy TrEMBL
Match: A0A6J1HAS8 (uncharacterized protein LOC111461653 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111461653 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 4.1e-25
Identity = 55/63 (87.30%), Postives = 58/63 (92.06%), Query Frame = 0

Query: 27  GVIDNASLASRRETDMQWKLIGREKHFFHWHSDFYSVSKRRVPNGPDPIHNRRVENSRQP 86
           G IDNAS ASRR TDMQWK+IG EKH FHWHSDFYSVSKRRVPNGPDPIHNRRVENS+QP
Sbjct: 50  GGIDNASPASRRATDMQWKVIGSEKHVFHWHSDFYSVSKRRVPNGPDPIHNRRVENSKQP 109

Query: 87  PIR 90
           P+R
Sbjct: 110 PVR 112

BLAST of CSPI05G28630 vs. ExPASy TrEMBL
Match: A0A5A7T759 (CLAVATA3/ESR (CLE)-related protein 25 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1582G00030 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 9.9e-19
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 0

Query: 34 LASRRETDMQWKLIGREKHFFHWHSDFYSVSKRRVPNGPDPIHNR 79
          LASRRETDMQWKLIG+EKHFFHWHSDFYSVSKRRVPNGPDPIHNR
Sbjct: 25 LASRRETDMQWKLIGKEKHFFHWHSDFYSVSKRRVPNGPDPIHNR 69

BLAST of CSPI05G28630 vs. ExPASy TrEMBL
Match: A0A6J5WYJ6 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS23893 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 6.4e-18
Identity = 51/95 (53.68%), Postives = 58/95 (61.05%), Query Frame = 0

Query: 1  MESKCSFLKSLFGAFLFLGIIWFSFIGVIDNAS------LASRRETDMQWKLIGREKHFF 60
          MES    L++LFGA L LG+ WF   G++ N S        S  +    WKLIGREKH  
Sbjct: 1  MESDRKVLRTLFGALLLLGVFWFFLAGILVNRSTEKSTVTVSSTKMFKHWKLIGREKHAV 60

Query: 61 HWHSDFYSVSKRRVPNGPDPIHNRRVENSRQPPIR 90
           W S F  VSKRRVPNGPDPIHNRR   +RQPP R
Sbjct: 61 VWDSSFIYVSKRRVPNGPDPIHNRRAVKTRQPPTR 95

BLAST of CSPI05G28630 vs. NCBI nr
Match: KGN52425.1 (hypothetical protein Csa_008367 [Cucumis sativus])

HSP 1 Score: 191.4 bits (485), Expect = 3.3e-45
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0

Query: 1  MESKCSFLKSLFGAFLFLGIIWFSFIGVIDNASLASRRETDMQWKLIGREKHFFHWHSDF 60
          MESKCSFLKSLFGAFLFLGIIWFSFIGVIDNASLASRRETDMQWKLIGREKHFFHWHSDF
Sbjct: 1  MESKCSFLKSLFGAFLFLGIIWFSFIGVIDNASLASRRETDMQWKLIGREKHFFHWHSDF 60

Query: 61 YSVSKRRVPNGPDPIHNRRVENSRQPPIRV 91
          YSVSKRRVPNGPDPIHNRRVENSRQPPIRV
Sbjct: 61 YSVSKRRVPNGPDPIHNRRVENSRQPPIRV 90

BLAST of CSPI05G28630 vs. NCBI nr
Match: KAG6578608.1 (CLAVATA3/ESR (CLE)-related protein 25, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 166.4 bits (420), Expect = 1.2e-37
Identity = 77/89 (86.52%), Postives = 81/89 (91.01%), Query Frame = 0

Query: 1  MESKCSFLKSLFGAFLFLGIIWFSFIGVIDNASLASRRETDMQWKLIGREKHFFHWHSDF 60
          M S C FLKSLFGAFLFLG+IWFSFIGVIDNAS ASRR TD+QWK+IGR KH FHWHSDF
Sbjct: 1  MVSNCRFLKSLFGAFLFLGVIWFSFIGVIDNASPASRRATDVQWKMIGRGKHVFHWHSDF 60

Query: 61 YSVSKRRVPNGPDPIHNRRVENSRQPPIR 90
          YSVSKRRVPNGPDPIHNRRV NS+QPPIR
Sbjct: 61 YSVSKRRVPNGPDPIHNRRVGNSKQPPIR 89

BLAST of CSPI05G28630 vs. NCBI nr
Match: KAG7033147.1 (CLAVATA3/ESR (CLE)-related protein 25 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 162.2 bits (409), Expect = 2.2e-36
Identity = 74/89 (83.15%), Postives = 78/89 (87.64%), Query Frame = 0

Query: 1  MESKCSFLKSLFGAFLFLGIIWFSFIGVIDNASLASRRETDMQWKLIGREKHFFHWHSDF 60
          ME  C F + LFG FLFLGIIWFSFIG IDNAS ASRR TDMQWK+IG EKH FHWHSDF
Sbjct: 1  MEPNCRFFRLLFGVFLFLGIIWFSFIGGIDNASPASRRATDMQWKVIGSEKHVFHWHSDF 60

Query: 61 YSVSKRRVPNGPDPIHNRRVENSRQPPIR 90
          YSVSKRRVPNGPDPIHNRRVENS+QPP+R
Sbjct: 61 YSVSKRRVPNGPDPIHNRRVENSKQPPVR 89

BLAST of CSPI05G28630 vs. NCBI nr
Match: KAG7016157.1 (ylbH, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 140.2 bits (352), Expect = 8.8e-30
Identity = 64/71 (90.14%), Postives = 67/71 (94.37%), Query Frame = 0

Query: 7   FLKSLFGAFLFLGIIWFSFIGVIDNASLASRRETDMQWKLIGREKHFFHWHSDFYSVSKR 66
           FLKSLFGAFLFLG+IWFSFIGVIDNAS ASRR TD+QWK+IGR KH FHWHSDFYSVSKR
Sbjct: 307 FLKSLFGAFLFLGVIWFSFIGVIDNASPASRRATDVQWKMIGRGKHVFHWHSDFYSVSKR 366

Query: 67  RVPNGPDPIHN 78
           RVPNGPDPIHN
Sbjct: 367 RVPNGPDPIHN 377

BLAST of CSPI05G28630 vs. NCBI nr
Match: KAG6602472.1 (CLAVATA3/ESR (CLE)-related protein 25, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 124.4 bits (311), Expect = 5.0e-25
Identity = 62/88 (70.45%), Postives = 69/88 (78.41%), Query Frame = 0

Query: 2   ESKCSFLKSLFGAFLFLGIIWFSFIGVIDNASLASRRETDMQWKLIGREKHFFHWHSDFY 61
           E+ C  LK+L   +     I+F   G IDNAS ASRR TDMQWK+IG EKH FHWHSDFY
Sbjct: 47  EAAC--LKNLQRKWFLRASIYF---GGIDNASPASRRATDMQWKVIGSEKHVFHWHSDFY 106

Query: 62  SVSKRRVPNGPDPIHNRRVENSRQPPIR 90
           SVSKRRVPNGPDPIHNRRVENS+QPP+R
Sbjct: 107 SVSKRRVPNGPDPIHNRRVENSKQPPVR 129

BLAST of CSPI05G28630 vs. TAIR 10
Match: AT3G28455.1 (CLAVATA3/ESR-RELATED 25 )

HSP 1 Score: 62.0 bits (149), Expect = 2.9e-10
Identity = 33/81 (40.74%), Postives = 47/81 (58.02%), Query Frame = 0

Query: 8  LKSLFGAFLFLGIIWFSFIGVIDN-ASLASRRETDMQWKLIGREKHFFHWHSDFYSVSKR 67
          +++L G    LG+I F  +G++ N A      E     +  G++ + FH       VSKR
Sbjct: 6  IRALVGVIASLGLIVFLLVGILANSAPSVPSSENVKTLRFSGKDVNLFH-------VSKR 65

Query: 68 RVPNGPDPIHNRRVENSRQPP 88
          +VPNGPDPIHNR+ E SR+PP
Sbjct: 66 KVPNGPDPIHNRKAETSRRPP 79

BLAST of CSPI05G28630 vs. TAIR 10
Match: AT1G69970.2 (CLAVATA3/ESR-RELATED 26 )

HSP 1 Score: 48.5 bits (114), Expect = 3.3e-06
Identity = 21/29 (72.41%), Postives = 23/29 (79.31%), Query Frame = 0

Query: 61  YSVSKRRVPNGPDPIHNRRVENSRQPPIR 90
           Y  SKR+VP GPDPIHNRR  NSR+PP R
Sbjct: 73  YVASKRKVPRGPDPIHNRRAGNSRRPPGR 101

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q8LFL44.0e-0940.74CLAVATA3/ESR (CLE)-related protein 25 OS=Arabidopsis thaliana OX=3702 GN=CLE25 P... [more]
Match NameE-valueIdentityDescription
A0A0A0KS321.6e-45100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G633230 PE=4 SV=1[more]
A0A6J1HAQ44.1e-2587.30uncharacterized protein LOC111461653 isoform X2 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1HAS84.1e-2587.30uncharacterized protein LOC111461653 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A5A7T7599.9e-1997.78CLAVATA3/ESR (CLE)-related protein 25 OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A6J5WYJ66.4e-1853.68Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS23893 PE=4 S... [more]
Match NameE-valueIdentityDescription
KGN52425.13.3e-45100.00hypothetical protein Csa_008367 [Cucumis sativus][more]
KAG6578608.11.2e-3786.52CLAVATA3/ESR (CLE)-related protein 25, partial [Cucurbita argyrosperma subsp. so... [more]
KAG7033147.12.2e-3683.15CLAVATA3/ESR (CLE)-related protein 25 [Cucurbita argyrosperma subsp. argyrosperm... [more]
KAG7016157.18.8e-3090.14ylbH, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6602472.15.0e-2570.45CLAVATA3/ESR (CLE)-related protein 25, partial [Cucurbita argyrosperma subsp. so... [more]
Match NameE-valueIdentityDescription
AT3G28455.12.9e-1040.74CLAVATA3/ESR-RELATED 25 [more]
AT1G69970.23.3e-0672.41CLAVATA3/ESR-RELATED 26 [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 67..90
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 71..90
NoneNo IPR availablePANTHERPTHR34277:SF18CLAVATA3/ESR (CLE)-RELATED PROTEIN 25coord: 1..89
IPR039316CLAVATA3/ESR (CLE)-related protein 25/26PANTHERPTHR34277CLAVATA3/ESR (CLE)-RELATED PROTEIN 26coord: 1..89

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G28630.1CSPI05G28630.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045168 cell-cell signaling involved in cell fate commitment
cellular_component GO:0016021 integral component of membrane