CSPI05G27210 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI05G27210
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionglycine-rich cell wall structural protein 1.0-like
LocationChr5: 25792874 .. 25793340 (-)
RNA-Seq ExpressionCSPI05G27210
SyntenyCSPI05G27210
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCCGTTGGGTTAAAGGATTGAGTCTCTTGCAGCATATCCGTAACTGCTTCTTCTTGCATTACTACGACGTTTGATGCAAATTAATCCTACAAATCCCAACAAACCTACTCCTATGATCACTCCAAATGCAATCCCTGCCTTTTGTCCCCCGCTCAATCCTTTTGAACCTCCACCACCCTTTTCCTTCAATGCTCCATTAGGCGTTGGCGACGGTGGTGGAGATGAACCCAAGTTAGGCGGCGGTGCAGGTGGTAAGTTAACAGTGGAATTAGGTGGTGGTGGTGGGGAGTTGGTTGTATTGGATGGGGGTGGGGGAGTGTCAGTTGCGTTGGATGGTGACGGTGGAGGCGGAGCGTCAGTGGTGTTGGCTGGTGGCGGTGGAGGCGGAGCGTCGGTGGCGTTGGATGGTGGCGGTGGAGGTGGAGCGTCGGTGGCGTTGGATGGTGGGGGTGGAGGTGGAGCGTAG

mRNA sequence

ATCCGTTGGGTTAAAGGATTGAGTCTCTTGCAGCATATCCGTAACTGCTTCTTCTTGCATTACTACGACGTTTGATGCAAATTAATCCTACAAATCCCAACAAACCTACTCCTATGATCACTCCAAATGCAATCCCTGCCTTTTGTCCCCCGCTCAATCCTTTTGAACCTCCACCACCCTTTTCCTTCAATGCTCCATTAGGCGTTGGCGACGGTGGTGGAGATGAACCCAAGTTAGGCGGCGGTGCAGGTGGTAAGTTAACAGTGGAATTAGGTGGTGGTGGTGGGGAGTTGGTTGTATTGGATGGGGGTGGGGGAGTGTCAGTTGCGTTGGATGGTGACGGTGGAGGCGGAGCGTCAGTGGTGTTGGCTGGTGGCGGTGGAGGCGGAGCGTCGGTGGCGTTGGATGGTGGCGGTGGAGGTGGAGCGTCGGTGGCGTTGGATGGTGGGGGTGGAGGTGGAGCGTAG

Coding sequence (CDS)

ATGCAAATTAATCCTACAAATCCCAACAAACCTACTCCTATGATCACTCCAAATGCAATCCCTGCCTTTTGTCCCCCGCTCAATCCTTTTGAACCTCCACCACCCTTTTCCTTCAATGCTCCATTAGGCGTTGGCGACGGTGGTGGAGATGAACCCAAGTTAGGCGGCGGTGCAGGTGGTAAGTTAACAGTGGAATTAGGTGGTGGTGGTGGGGAGTTGGTTGTATTGGATGGGGGTGGGGGAGTGTCAGTTGCGTTGGATGGTGACGGTGGAGGCGGAGCGTCAGTGGTGTTGGCTGGTGGCGGTGGAGGCGGAGCGTCGGTGGCGTTGGATGGTGGCGGTGGAGGTGGAGCGTCGGTGGCGTTGGATGGTGGGGGTGGAGGTGGAGCGTAG

Protein sequence

MQINPTNPNKPTPMITPNAIPAFCPPLNPFEPPPPFSFNAPLGVGDGGGDEPKLGGGAGGKLTVELGGGGGELVVLDGGGGVSVALDGDGGGGASVVLAGGGGGGASVALDGGGGGGASVALDGGGGGGA*
Homology
BLAST of CSPI05G27210 vs. ExPASy TrEMBL
Match: A0A6J1GYP3 (loricrin-like OS=Cucurbita moschata OX=3662 GN=LOC111458710 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 9.8e-28
Identity = 86/129 (66.67%), Postives = 94/129 (72.87%), Query Frame = 0

Query: 1   MQINPTNPNKPTPMITPNAIPAFCPPLNPFEPPPPFSFNAPLGVGDGGGDEPKLGGGAGG 60
           MQ+NP NPNKP P+ITPNA+PAFCPPL+PFE  PPFSFNA    G GGGDE   G GAGG
Sbjct: 1   MQMNPKNPNKPAPIITPNAMPAFCPPLSPFESAPPFSFNALFVPGAGGGDELTSGEGAGG 60

Query: 61  KLTVELGGGGGELVVLDGGGGVSVALDGDGGGGASVVLAGGGGGGASVALDGGGGGGASV 120
           ++ V  GGGG  +V   GGGG+ V LDG GGGG  VVL G GGGG  V LDG GGGG  V
Sbjct: 61  EMLVSGGGGGLSVVFDGGGGGLPVVLDGGGGGGLPVVLDGAGGGGLPVVLDGAGGGGLPV 120

Query: 121 ALDGGGGGG 130
            LDGGGGGG
Sbjct: 121 VLDGGGGGG 129

BLAST of CSPI05G27210 vs. ExPASy TrEMBL
Match: A0A6J1JS83 (glycine-rich cell wall structural protein 1.0-like OS=Cucurbita maxima OX=3661 GN=LOC111487352 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 8.6e-24
Identity = 84/131 (64.12%), Postives = 89/131 (67.94%), Query Frame = 0

Query: 3   INPTNPNKPTPMITPNAIPAFCPPLNPFEPPPPFSFNAPLGVGDGGGDEPKLGGGAGGKL 62
           +NP NPNKP P+ITP  +PAFCPPL+PFE  PPFSFNA   VG GGGDE   G GA    
Sbjct: 1   MNPKNPNKPAPIITPKPMPAFCPPLSPFESAPPFSFNASFVVGAGGGDEFTSGEGA---- 60

Query: 63  TVELGGGGGELVVLD---GGGGVSVALDGDGGGGASVVLAGGGGGGASVALDGGGGGGAS 122
               GGGGG  VV D   GGGG+   LDG GGGG  VVL GGGGGG  V LDG GGGG  
Sbjct: 61  ----GGGGGVSVVFDGGGGGGGLPAVLDGGGGGGLPVVLDGGGGGGLPVVLDGAGGGGLP 120

Query: 123 VALDGGGGGGA 131
           V LDGGGGGGA
Sbjct: 121 VVLDGGGGGGA 123

BLAST of CSPI05G27210 vs. ExPASy TrEMBL
Match: A0A1S4DW63 (loricrin-like OS=Cucumis melo OX=3656 GN=LOC103489470 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 5.4e-10
Identity = 59/89 (66.29%), Postives = 60/89 (67.42%), Query Frame = 0

Query: 43  GVGDGGGDEPKLGGGAGGKLTVELGGGGGELVVLD--GGGGVSVALDGDGGGGASVVLAG 102
           G G GGGDE  +  G GG   V  GGGGG  VV D  GGGGVSV  DG GGGG SVV  G
Sbjct: 5   GGGGGGGDELVVLDGGGGVSVVLDGGGGGVSVVFDGGGGGGVSVVFDGGGGGGVSVVFDG 64

Query: 103 GGGGGASVALDGGGGGGASVALDGGGGGG 130
           GGGGG SV  DGGGGGG  V LDGGGGGG
Sbjct: 65  GGGGGVSVVFDGGGGGGVLVVLDGGGGGG 93

BLAST of CSPI05G27210 vs. ExPASy TrEMBL
Match: I1XA89 (Circumsporozoite protein (Fragment) OS=Plasmodium sp. VM71 OX=1178020 GN=CSP PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.0e-04
Identity = 51/94 (54.26%), Postives = 55/94 (58.51%), Query Frame = 0

Query: 41  PLGVGDGGGDEPKL----GGGAGGKLTVELGGGGGELVVLDGGGGVSVALDG-DGGGGAS 100
           P G G GGG E  +    GGG GG+  V  GGGGGE VV  GGGG    + G  GGGG  
Sbjct: 111 PGGGGGGGGGEAVVPGRGGGGGGGEAVVPGGGGGGEAVVPGGGGGGEAVVPGRGGGGGGE 170

Query: 101 VVLAGGGGGGASVALDGGGGGGASVALDGGGGGG 130
            V  GGGGGG      GGGGGG +VA  GGGGGG
Sbjct: 171 AVAPGGGGGGGEAVAPGGGGGGEAVAPGGGGGGG 204

BLAST of CSPI05G27210 vs. ExPASy TrEMBL
Match: A0A7K8R4S6 (K2C75 protein (Fragment) OS=Smithornis capensis OX=363769 GN=Krt75_1 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.6e-04
Identity = 52/95 (54.74%), Postives = 60/95 (63.16%), Query Frame = 0

Query: 35  PFSFNAPLGVGDGGGDEPKLGGGAGGKLTVELGGGGGELVVLDGGGGVSVALDGDGGGGA 94
           P S++  +    G    P LGGG GG L++  GGGGG    L GGGG S  L G GGGG+
Sbjct: 571 PISYSV-ISSSSGLAAGPGLGGGFGG-LSLSAGGGGGGF-GLGGGGGSSFGLGGGGGGGS 630

Query: 95  SVVLAGGGGGGASVALDGGGGGGASVALDGGGGGG 130
           S  L GGGGGG+S  L GGGGGG+S  L GGGGGG
Sbjct: 631 SFGLGGGGGGGSSFGLGGGGGGGSSFGLGGGGGGG 662

BLAST of CSPI05G27210 vs. NCBI nr
Match: XP_031741791.1 (glycine-rich protein 23-like [Cucumis sativus])

HSP 1 Score: 229.6 bits (584), Expect = 1.6e-56
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0

Query: 1   MQINPTNPNKPTPMITPNAIPAFCPPLNPFEPPPPFSFNAPLGVGDGGGDEPKLGGGAGG 60
           MQINPTNPNKPTPMITPNAIPAFCPPLNPFEPPPPFSFNAPLGVGDGGGDEPKLGGGAGG
Sbjct: 1   MQINPTNPNKPTPMITPNAIPAFCPPLNPFEPPPPFSFNAPLGVGDGGGDEPKLGGGAGG 60

Query: 61  KLTVELGGGGGELVVLDGGGGVSVALDGDGGGGASVVLAGGGGGGASVALDGGGGGGASV 120
           KLTVELGGGGGELVVLDGGGGVSVALDGDGGGGASVVLAGGGGGGASVALDGGGGGGASV
Sbjct: 61  KLTVELGGGGGELVVLDGGGGVSVALDGDGGGGASVVLAGGGGGGASVALDGGGGGGASV 120

Query: 121 ALDGGGGGGA 131
           ALDGGGGGGA
Sbjct: 121 ALDGGGGGGA 130

BLAST of CSPI05G27210 vs. NCBI nr
Match: KAE8648858.1 (hypothetical protein Csa_007747 [Cucumis sativus])

HSP 1 Score: 197.2 bits (500), Expect = 8.8e-47
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0

Query: 1   MQINPTNPNKPTPMITPNAIPAFCPPLNPFEPPPPFSFNAPLGVGDGGGDEPKLGGGAGG 60
           MQINPTNPNKPTPMITPNAIPAFCPPLNPFEPPPPFSFNAPLGVGDGGGDEPKLGGGAGG
Sbjct: 1   MQINPTNPNKPTPMITPNAIPAFCPPLNPFEPPPPFSFNAPLGVGDGGGDEPKLGGGAGG 60

Query: 61  KLTVELGGGGGELVVLDGGGGVSVALDGDGGGGASVVLAGGGGGGA 107
           KLTVELGGGGGELVVLDGGGGVSVALDGDGGGGASVVLAGGGGGGA
Sbjct: 61  KLTVELGGGGGELVVLDGGGGVSVALDGDGGGGASVVLAGGGGGGA 106

BLAST of CSPI05G27210 vs. NCBI nr
Match: XP_022957272.1 (loricrin-like [Cucurbita moschata])

HSP 1 Score: 132.9 bits (333), Expect = 2.0e-27
Identity = 86/129 (66.67%), Postives = 94/129 (72.87%), Query Frame = 0

Query: 1   MQINPTNPNKPTPMITPNAIPAFCPPLNPFEPPPPFSFNAPLGVGDGGGDEPKLGGGAGG 60
           MQ+NP NPNKP P+ITPNA+PAFCPPL+PFE  PPFSFNA    G GGGDE   G GAGG
Sbjct: 1   MQMNPKNPNKPAPIITPNAMPAFCPPLSPFESAPPFSFNALFVPGAGGGDELTSGEGAGG 60

Query: 61  KLTVELGGGGGELVVLDGGGGVSVALDGDGGGGASVVLAGGGGGGASVALDGGGGGGASV 120
           ++ V  GGGG  +V   GGGG+ V LDG GGGG  VVL G GGGG  V LDG GGGG  V
Sbjct: 61  EMLVSGGGGGLSVVFDGGGGGLPVVLDGGGGGGLPVVLDGAGGGGLPVVLDGAGGGGLPV 120

Query: 121 ALDGGGGGG 130
            LDGGGGGG
Sbjct: 121 VLDGGGGGG 129

BLAST of CSPI05G27210 vs. NCBI nr
Match: XP_023549817.1 (glycine-rich cell wall structural protein-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 129.4 bits (324), Expect = 2.2e-26
Identity = 85/130 (65.38%), Postives = 92/130 (70.77%), Query Frame = 0

Query: 1   MQINPTNPNKPTPMITPNAIPAFCPPLNPFEPPPPFSFNAPLGVGDGGGDEPKLGGGAGG 60
           MQ+NP NPNKP PMITPNA+PAFCPPL+PFE  PPFSFNA    G G GDE   G GAGG
Sbjct: 17  MQMNPKNPNKPAPMITPNAMPAFCPPLSPFESAPPFSFNALFVAGAGAGDELTSGEGAGG 76

Query: 61  KLTVELGGGGGELVVLDGGGGVSVALDGDGGGGASVVLAGGGGGGASVALDGGGGGGASV 120
           ++ V  GGGG  +V   GGGG SV  +G GGGG  VVL   GGGG  V LDG GGGG  V
Sbjct: 77  EMLVSGGGGGLSVVFDGGGGGPSVVFNGGGGGGLPVVLDAAGGGGLPVVLDGAGGGGLPV 136

Query: 121 ALDGGGGGGA 131
            LDGGGGGGA
Sbjct: 137 VLDGGGGGGA 146

BLAST of CSPI05G27210 vs. NCBI nr
Match: XP_022990509.1 (glycine-rich cell wall structural protein 1.0-like [Cucurbita maxima])

HSP 1 Score: 119.8 bits (299), Expect = 1.8e-23
Identity = 84/131 (64.12%), Postives = 89/131 (67.94%), Query Frame = 0

Query: 3   INPTNPNKPTPMITPNAIPAFCPPLNPFEPPPPFSFNAPLGVGDGGGDEPKLGGGAGGKL 62
           +NP NPNKP P+ITP  +PAFCPPL+PFE  PPFSFNA   VG GGGDE   G GA    
Sbjct: 1   MNPKNPNKPAPIITPKPMPAFCPPLSPFESAPPFSFNASFVVGAGGGDEFTSGEGA---- 60

Query: 63  TVELGGGGGELVVLD---GGGGVSVALDGDGGGGASVVLAGGGGGGASVALDGGGGGGAS 122
               GGGGG  VV D   GGGG+   LDG GGGG  VVL GGGGGG  V LDG GGGG  
Sbjct: 61  ----GGGGGVSVVFDGGGGGGGLPAVLDGGGGGGLPVVLDGGGGGGLPVVLDGAGGGGLP 120

Query: 123 VALDGGGGGGA 131
           V LDGGGGGGA
Sbjct: 121 VVLDGGGGGGA 123

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1GYP39.8e-2866.67loricrin-like OS=Cucurbita moschata OX=3662 GN=LOC111458710 PE=4 SV=1[more]
A0A6J1JS838.6e-2464.12glycine-rich cell wall structural protein 1.0-like OS=Cucurbita maxima OX=3661 G... [more]
A0A1S4DW635.4e-1066.29loricrin-like OS=Cucumis melo OX=3656 GN=LOC103489470 PE=4 SV=1[more]
I1XA892.0e-0454.26Circumsporozoite protein (Fragment) OS=Plasmodium sp. VM71 OX=1178020 GN=CSP PE=... [more]
A0A7K8R4S62.6e-0454.74K2C75 protein (Fragment) OS=Smithornis capensis OX=363769 GN=Krt75_1 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
XP_031741791.11.6e-56100.00glycine-rich protein 23-like [Cucumis sativus][more]
KAE8648858.18.8e-47100.00hypothetical protein Csa_007747 [Cucumis sativus][more]
XP_022957272.12.0e-2766.67loricrin-like [Cucurbita moschata][more]
XP_023549817.12.2e-2665.38glycine-rich cell wall structural protein-like [Cucurbita pepo subsp. pepo][more]
XP_022990509.11.8e-2364.12glycine-rich cell wall structural protein 1.0-like [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..59

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G27210.1CSPI05G27210.1mRNA