CSPI05G25630 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI05G25630
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Rad60-SLD domain-containing protein
Location	Chr5: 24812521 .. 24815024 (+)
RNA-Seq Expression	CSPI05G25630
Synteny	CSPI05G25630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCCCATTGCTAAAAGAAAGATAATTTCAAGTGGCATCTCGCTAGGTAACGCTTCGACGGTGAACGGACAGCGTGTTTGAATTTCCCGGCCGGATACGACGAATATTGATCCAAGAAGAGCCCCAAGAGTTTAGGTTTCGAGTCCTTTGACAATGGTGAGTCTGTTTCTCTCTTTAATTCCACTGGCACGGGACTCTTTTCTGTTCATTTCTACTCCTGCTTTTCCTTTCTCTCTCACTTGTCAATTCTTACTTTGAGTTTTCATTTTCAGGCCGATTCCGCTGAAGAATTTGAACCCTTGTTCGATTACAGCCGCGTTCAGCCTCCCTCCGTTGTCTGCCTCGATGGTAAAAGTCCTCAGTGATATTTGAATTTCAAGAGAGTTAGAACTTTCCATTTCAATGTGTTTGATGTGATTATAATTCTTTTTAGCAAGAAATTTCGAAATTGGGTTTCCTTGTGCTTGCAGTCTTTCAAACTGATGGTTATTTTGTGCTTTTTTTTTCCTTTTATTTGGATTAACAACATTAGACGAGGATTCAGATGCAGATAAATCTCCGGCGCCTTTTACCAAGCGAGCAAAGATTGTGAATCCGGCGGTATATTATTCCCTTCATGTAGTGAAATAGTGGAGTTTCTTTTGACCTAAGATTAGTGTTCGTTGAAACAGCCAGTAAAATTTGTTTTTTTGGTGACCATTTCCTTTTAATCAATATTTAGGCTACGAGTTCGGTGAATGGTAACCCAAAGGAGAAACAAGTGGAAATTGAAGATAAAGAGGAAGATTGGCTTCCTCCTCCACCGAAAGTGTTAGTTGATGCAGAGAATAGGCATGTGGAAGATTCCACATTGAAGGAGTTAAGGTATTCCAACTTAGTGGTATGCATCTATTGCTTGATTAATCAATTAATATAAAATGATATTCTTATTTTTTATGTGCATAAGCTGCCATCGCCTTTGTCTCATCCCATTTTTCCTTTGCATATCATATTGTATTCTGTACTGATAGGTTAAAGAAGCAAGAGTTGGCCTCTGTTGCTTTATCAGCTAAAAACTTGCTGCGAGAAGTGGAGGAATCTGCAAAAGTGGATGTTGGAAACACGTCCATGGATCCTCTGGAACCTGATTTGGATGTCCAAACTCCAGTTGCTTCTAAAGAAAGAGCAAAAATTGTTATTTCTGTACGCGACAGTGACAAGAAAGAGCTTAAACAGTATCGCCTGTTTGTGGTATGTTCTCGTCCATGTCTGCCTGTTATTCACCACTTCACAATTGGCATTCTTTAATTGCAACCATCCTGTTCTGCCAATATATATCATATGTTTGCGATCACTGTTTTTGATATCCATGCAAGATTTCTTTTATTTTCCCTGTACCCTTGGTAAGCATGGTTAGATACAGGGAAACGAATGAATATGATGAAGTTGAACAGTGAGAAAAGGAAATAAGTATAGACTATGATATTGGTAGCAAATCTTGAAAACATTGATTAATGGAAAGGGAGTTGTGTAGAACTATAATTCCTTCAATTTCTGAAGTAGTCTCTTTATTATCTTGAAAAGCGTTTGGTTTCTTGGTTACTTTCTAGTTGTCAACAGTGATTTGCCACATATACCCTTTAATTTGATTTTCTTGTTCTTCCCTTCCACGTTATGATTGCCTTAACTTCTCTACTTTTATGCGATGATCACTAGATTTGAAGTTGAACTTAGATTTTACTTTTTTTACATTAGTGTTATGGTATAGCTTCTGCAATTATGAATGTGGGTTGTCTTAGAACAATGAGTCTTTTCTATAAATCATCCACGGTCAGGCTATAGTGCAAGTACTATAGGTCTCCCATGGTGATGATACTTCAGATATTACTTGATTGAATTACTTTAGGACTGTTTATTAAAAACACAGGACTCTGGGGATAAGTATTTCCTCCCCGATTGGGTGGCCTAACTCCCTTATCTTATACCTAGGCTTGTTGGTAGGTATTACTTTTTTCCTCCGTATTGTCTGTCTTTATATAACCCTGATACGGTGGTCTTTCGTATGTAACTTTATGATGTGAGTGTGACACTTTTAATAATGTTCCATACATACTCTAATATGGTTTTGGAATTTTATTGTTTGTCTAGGATGACAAGTTTGAGCGACTTTTCAAATTATACGCAGACAAACTTAAAATTGATCCCAAGAGTTTGGTTTTTGTTTTTGACGGGGATAAAGTCGGCCCAGATGATACCCCAGGTGGCCTTGGCATGGAAGACGATGATATGATCGAAGTTAACATCAAGTCGAGTTGAGTAAGGTGTCTTTTGAGTGTATATTTTGCAAAATACTTCACCAGTTTTGGGGACGGGAAACTTGGAAAAGACCAAATTCAATACTTTGTAGTTTGTACCGTAAGATGAACAAATCGCTCATGGAAGGCTATGAAAATGTTCCTTTTGTGCGGGAAATTTGTTTGGTAAGCACATCGAGATAAATGAAAAAAAAAAACAATATATTGTATT

mRNA sequence

GCCCCATTGCTAAAAGAAAGATAATTTCAAGTGGCATCTCGCTAGGTAACGCTTCGACGGTGAACGGACAGCGTGTTTGAATTTCCCGGCCGGATACGACGAATATTGATCCAAGAAGAGCCCCAAGAGTTTAGGTTTCGAGTCCTTTGACAATGGCCGATTCCGCTGAAGAATTTGAACCCTTGTTCGATTACAGCCGCGTTCAGCCTCCCTCCGTTGTCTGCCTCGATGACGAGGATTCAGATGCAGATAAATCTCCGGCGCCTTTTACCAAGCGAGCAAAGATTGTGAATCCGGCGGCTACGAGTTCGGTGAATGGTAACCCAAAGGAGAAACAAGTGGAAATTGAAGATAAAGAGGAAGATTGGCTTCCTCCTCCACCGAAAGTGTTAGTTGATGCAGAGAATAGGCATGTGGAAGATTCCACATTGAAGGAGTTAAGGTTAAAGAAGCAAGAGTTGGCCTCTGTTGCTTTATCAGCTAAAAACTTGCTGCGAGAAGTGGAGGAATCTGCAAAAGTGGATGTTGGAAACACGTCCATGGATCCTCTGGAACCTGATTTGGATGTCCAAACTCCAGTTGCTTCTAAAGAAAGAGCAAAAATTGTTATTTCTGTACGCGACAGTGACAAGAAAGAGCTTAAACAGTATCGCCTGTTTGTGGATGACAAGTTTGAGCGACTTTTCAAATTATACGCAGACAAACTTAAAATTGATCCCAAGAGTTTGGTTTTTGTTTTTGACGGGGATAAAGTCGGCCCAGATGATACCCCAGGTGGCCTTGGCATGGAAGACGATGATATGATCGAAGTTAACATCAAGTCGAGTTGAGTAAGGTGTCTTTTGAGTGTATATTTTGCAAAATACTTCACCAGTTTTGGGGACGGGAAACTTGGAAAAGACCAAATTCAATACTTTGTAGTTTGTACCGTAAGATGAACAAATCGCTCATGGAAGGCTATGAAAATGTTCCTTTTGTGCGGGAAATTTGTTTGGTAAGCACATCGAGATAAATGAAAAAAAAAAACAATATATTGTATT

Coding sequence (CDS)

ATGGCCGATTCCGCTGAAGAATTTGAACCCTTGTTCGATTACAGCCGCGTTCAGCCTCCCTCCGTTGTCTGCCTCGATGACGAGGATTCAGATGCAGATAAATCTCCGGCGCCTTTTACCAAGCGAGCAAAGATTGTGAATCCGGCGGCTACGAGTTCGGTGAATGGTAACCCAAAGGAGAAACAAGTGGAAATTGAAGATAAAGAGGAAGATTGGCTTCCTCCTCCACCGAAAGTGTTAGTTGATGCAGAGAATAGGCATGTGGAAGATTCCACATTGAAGGAGTTAAGGTTAAAGAAGCAAGAGTTGGCCTCTGTTGCTTTATCAGCTAAAAACTTGCTGCGAGAAGTGGAGGAATCTGCAAAAGTGGATGTTGGAAACACGTCCATGGATCCTCTGGAACCTGATTTGGATGTCCAAACTCCAGTTGCTTCTAAAGAAAGAGCAAAAATTGTTATTTCTGTACGCGACAGTGACAAGAAAGAGCTTAAACAGTATCGCCTGTTTGTGGATGACAAGTTTGAGCGACTTTTCAAATTATACGCAGACAAACTTAAAATTGATCCCAAGAGTTTGGTTTTTGTTTTTGACGGGGATAAAGTCGGCCCAGATGATACCCCAGGTGGCCTTGGCATGGAAGACGATGATATGATCGAAGTTAACATCAAGTCGAGTTGA

Protein sequence

MADSAEEFEPLFDYSRVQPPSVVCLDDEDSDADKSPAPFTKRAKIVNPAATSSVNGNPKEKQVEIEDKEEDWLPPPPKVLVDAENRHVEDSTLKELRLKKQELASVALSAKNLLREVEESAKVDVGNTSMDPLEPDLDVQTPVASKERAKIVISVRDSDKKELKQYRLFVDDKFERLFKLYADKLKIDPKSLVFVFDGDKVGPDDTPGGLGMEDDDMIEVNIKSS*

Homology

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BLAST of CSPI05G25630 vs. ExPASy Swiss-Prot
Match: P55853 (Small ubiquitin-related modifier OS=Caenorhabditis elegans OX=6239 GN=smo-1 PE=1 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 3.9e-05
Identity = 30/70 (42.86%), Postives = 40/70 (57.14%), Query Frame = 0


Query: 151 IVISVRDSDKKELKQYRLFVDDKFERLFKLYADKLKIDPKSLVFVFDGDKVGPDDTPGGL 210
           I I V   D  E+  +R+       +L K YAD+  +   SL F+FDG ++  DDTP  L
Sbjct: 15  IKIKVVGQDSNEV-HFRVKYGTSMAKLKKSYADRTGVAVNSLRFLFDGRRINDDDTPKTL 74

Query: 211 GMEDDDMIEV 221
            MEDDD+IEV
Sbjct: 75  EMEDDDVIEV 83

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BLAST of CSPI05G25630 vs. ExPASy Swiss-Prot
Match: Q9VCP1 (Uncharacterized protein CG4449 OS=Drosophila melanogaster OX=7227 GN=CG4449 PE=1 SV=4)

HSP 1 Score: 46.2 bits (108), Expect = 5.7e-04
Identity = 20/53 (37.74%), Postives = 35/53 (66.04%), Query Frame = 0


Query: 172 DKFERLFKLYADKLKIDPKSLVFVFDGDKVGPDDTPGGLGMEDDDMIEVNIKS 225
           D F+ +F   A++L  DP+++   FDGD + P+DTP    ME +++I++ IK+
Sbjct: 372 DNFKIIFIKCAEELNCDPRTIKLFFDGDLLDPNDTPNNQDMEGNEVIDLKIKA 424

[Close]

BLAST of CSPI05G25630 vs. ExPASy TrEMBL
Match: A0A0A0KWH7 (Rad60-SLD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G610500 PE=4 SV=1)

HSP 1 Score: 431.8 bits (1109), Expect = 1.8e-117
Identity = 224/225 (99.56%), Postives = 225/225 (100.00%), Query Frame = 0


Query: 1   MADSAEEFEPLFDYSRVQPPSVVCLDDEDSDADKSPAPFTKRAKIVNPAATSSVNGNPKE 60
           MADSAEEFEPLFDYSRVQPPSVVCLDDEDSDADKSPAPFTKRAKIVNPAATSSVNGNPKE
Sbjct: 1   MADSAEEFEPLFDYSRVQPPSVVCLDDEDSDADKSPAPFTKRAKIVNPAATSSVNGNPKE 60

Query: 61  KQVEIEDKEEDWLPPPPKVLVDAENRHVEDSTLKELRLKKQELASVALSAKNLLREVEES 120
           KQVEIEDKEEDWLPPPPKVLVDAENRHVEDSTLKELRLKKQELASVALSAKNLLREVEES
Sbjct: 61  KQVEIEDKEEDWLPPPPKVLVDAENRHVEDSTLKELRLKKQELASVALSAKNLLREVEES 120

Query: 121 AKVDVGNTSMDPLEPDLDVQTPVASKERAKIVISVRDSDKKELKQYRLFVDDKFERLFKL 180
           AKVDVGNTSMDPLEPDLDVQTPVASKERAKIVISVRDSDK+ELKQYRLFVDDKFERLFKL
Sbjct: 121 AKVDVGNTSMDPLEPDLDVQTPVASKERAKIVISVRDSDKEELKQYRLFVDDKFERLFKL 180

Query: 181 YADKLKIDPKSLVFVFDGDKVGPDDTPGGLGMEDDDMIEVNIKSS 226
           YADKLKIDPKSLVFVFDGDKVGPDDTPGGLGMEDDDMIEVNIKSS
Sbjct: 181 YADKLKIDPKSLVFVFDGDKVGPDDTPGGLGMEDDDMIEVNIKSS 225

[Close]

BLAST of CSPI05G25630 vs. ExPASy TrEMBL
Match: A0A5A7SVU4 (Putative Ubiquitin-like superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001350 PE=3 SV=1)

HSP 1 Score: 401.7 bits (1031), Expect = 2.0e-108
Identity = 209/225 (92.89%), Postives = 214/225 (95.11%), Query Frame = 0


Query: 1   MADSAEEFEPLFDYSRVQPPSVVCLDDEDSDADKSPAPFTKRAKIVNPAATSSVNGNPKE 60
           MADSAEEFEPLFDYSRVQPPSVVCLDDEDSDADKSPAPFTKRAKI N AATSSVNGNPKE
Sbjct: 1   MADSAEEFEPLFDYSRVQPPSVVCLDDEDSDADKSPAPFTKRAKIANLAATSSVNGNPKE 60

Query: 61  KQVEIEDKEEDWLPPPPKVLVDAENRHVEDSTLKELRLKKQELASVALSAKNLLREVEES 120
           KQVEIED EEDWLPPPPKVLVD  NR  EDSTLKELRLKKQELASVALSAKNLLREVEES
Sbjct: 61  KQVEIEDNEEDWLPPPPKVLVDGNNRRGEDSTLKELRLKKQELASVALSAKNLLREVEES 120

Query: 121 AKVDVGNTSMDPLEPDLDVQTPVASKERAKIVISVRDSDKKELKQYRLFVDDKFERLFKL 180
           AKVDVGNTS D LEPDLDVQTPV SKERAKIVISVRDSDK+ELKQYRLFVDD FERLFK+
Sbjct: 121 AKVDVGNTSKDSLEPDLDVQTPVVSKERAKIVISVRDSDKEELKQYRLFVDDNFERLFKI 180

Query: 181 YADKLKIDPKSLVFVFDGDKVGPDDTPGGLGMEDDDMIEVNIKSS 226
           YADKLKIDP+SLVFVFDGDK+GP+DTPGGLGMEDDDMIEVNIKSS
Sbjct: 181 YADKLKIDPESLVFVFDGDKIGPNDTPGGLGMEDDDMIEVNIKSS 225

[Close]

BLAST of CSPI05G25630 vs. ExPASy TrEMBL
Match: A0A1S3BF31 (uncharacterized protein LOC103489317 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489317 PE=3 SV=1)

HSP 1 Score: 401.7 bits (1031), Expect = 2.0e-108
Identity = 209/225 (92.89%), Postives = 214/225 (95.11%), Query Frame = 0


Query: 1   MADSAEEFEPLFDYSRVQPPSVVCLDDEDSDADKSPAPFTKRAKIVNPAATSSVNGNPKE 60
           MADSAEEFEPLFDYSRVQPPSVVCLDDEDSDADKSPAPFTKRAKI N AATSSVNGNPKE
Sbjct: 1   MADSAEEFEPLFDYSRVQPPSVVCLDDEDSDADKSPAPFTKRAKIANLAATSSVNGNPKE 60

Query: 61  KQVEIEDKEEDWLPPPPKVLVDAENRHVEDSTLKELRLKKQELASVALSAKNLLREVEES 120
           KQVEIED EEDWLPPPPKVLVD  NR  EDSTLKELRLKKQELASVALSAKNLLREVEES
Sbjct: 61  KQVEIEDNEEDWLPPPPKVLVDGNNRRGEDSTLKELRLKKQELASVALSAKNLLREVEES 120

Query: 121 AKVDVGNTSMDPLEPDLDVQTPVASKERAKIVISVRDSDKKELKQYRLFVDDKFERLFKL 180
           AKVDVGNTS D LEPDLDVQTPV SKERAKIVISVRDSDK+ELKQYRLFVDD FERLFK+
Sbjct: 121 AKVDVGNTSKDSLEPDLDVQTPVVSKERAKIVISVRDSDKEELKQYRLFVDDNFERLFKI 180

Query: 181 YADKLKIDPKSLVFVFDGDKVGPDDTPGGLGMEDDDMIEVNIKSS 226
           YADKLKIDP+SLVFVFDGDK+GP+DTPGGLGMEDDDMIEVNIKSS
Sbjct: 181 YADKLKIDPESLVFVFDGDKIGPNDTPGGLGMEDDDMIEVNIKSS 225

[Close]

BLAST of CSPI05G25630 vs. ExPASy TrEMBL
Match: A0A6J1JEF8 (uncharacterized protein LOC111483658 OS=Cucurbita maxima OX=3661 GN=LOC111483658 PE=4 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 2.0e-92
Identity = 181/225 (80.44%), Postives = 201/225 (89.33%), Query Frame = 0


Query: 1   MADSAEEFEPLFDYSRVQPPSVVCLDDEDSDADKSPAPFTKRAKIVNPAATSSVNGNPKE 60
           MAD AEEFEPLF+YSRV P SV CLD+EDSDA  SP PF+KR++I+NPA TS V+GNPKE
Sbjct: 1   MADYAEEFEPLFNYSRVHPRSVDCLDEEDSDACMSPEPFSKRSRILNPAVTSLVDGNPKE 60

Query: 61  KQVEIEDKEEDWLPPPPKVLVDAENRHVEDSTLKELRLKKQELASVALSAKNLLREVEES 120
           KQVEIED+EEDWLPPPPKV VDA+N   EDSTLKELRL K ELASV LSAKNLLREVEES
Sbjct: 61  KQVEIEDEEEDWLPPPPKVSVDAKNMCGEDSTLKELRLMKLELASVTLSAKNLLREVEES 120

Query: 121 AKVDVGNTSMDPLEPDLDVQTPVASKERAKIVISVRDSDKKELKQYRLFVDDKFERLFKL 180
           AK+DVGNT  DPLEP LD Q P+ASKERAKIVISVRDSDK+ELKQ+R+F+DDKFERLFK+
Sbjct: 121 AKMDVGNTPQDPLEPALDDQIPIASKERAKIVISVRDSDKEELKQFRIFMDDKFERLFKM 180

Query: 181 YADKLKIDPKSLVFVFDGDKVGPDDTPGGLGMEDDDMIEVNIKSS 226
           YA+K KIDPKSLVF+FDGDKVGPDDTP GLGMEDDDMI+VNI+ S
Sbjct: 181 YAEKRKIDPKSLVFIFDGDKVGPDDTPVGLGMEDDDMIDVNIRPS 225

[Close]

BLAST of CSPI05G25630 vs. ExPASy TrEMBL
Match: A0A6J1H158 (uncharacterized protein LOC111458628 OS=Cucurbita moschata OX=3662 GN=LOC111458628 PE=3 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 2.6e-92
Identity = 183/225 (81.33%), Postives = 201/225 (89.33%), Query Frame = 0


Query: 1   MADSAEEFEPLFDYSRVQPPSVVCLDDEDSDADKSPAPFTKRAKIVNPAATSSVNGNPKE 60
           MAD AEEFEPLFDYSRVQP SV CLDDEDSDA  SP PF+KR++I+NPA TS V+G  K+
Sbjct: 1   MADYAEEFEPLFDYSRVQPRSVDCLDDEDSDACMSPEPFSKRSRILNPAVTSLVDGIRKD 60

Query: 61  KQVEIEDKEEDWLPPPPKVLVDAENRHVEDSTLKELRLKKQELASVALSAKNLLREVEES 120
           KQVEIED+EEDWLPPPPKV VDA+N   EDSTLKELRL K ELASVALSAKNLLREVEES
Sbjct: 61  KQVEIEDEEEDWLPPPPKVSVDAKNMCGEDSTLKELRLMKLELASVALSAKNLLREVEES 120

Query: 121 AKVDVGNTSMDPLEPDLDVQTPVASKERAKIVISVRDSDKKELKQYRLFVDDKFERLFKL 180
           AK+DVGNT  DPLEP LD Q P+ASKERAKIVISVRDSDK+ELKQ+RLF+DDKFERLFK+
Sbjct: 121 AKMDVGNTPQDPLEPALDDQIPIASKERAKIVISVRDSDKEELKQFRLFMDDKFERLFKM 180

Query: 181 YADKLKIDPKSLVFVFDGDKVGPDDTPGGLGMEDDDMIEVNIKSS 226
           YA+K KIDPKSLVF+FDGDKV PDDTP GLGMEDDDMI+VNI+SS
Sbjct: 181 YAEKRKIDPKSLVFIFDGDKVSPDDTPTGLGMEDDDMIDVNIRSS 225

[Close]

BLAST of CSPI05G25630 vs. NCBI nr
Match: XP_004135076.1 (uncharacterized protein LOC101214853 [Cucumis sativus])

HSP 1 Score: 431.8 bits (1109), Expect = 3.7e-117
Identity = 224/225 (99.56%), Postives = 225/225 (100.00%), Query Frame = 0


Query: 1   MADSAEEFEPLFDYSRVQPPSVVCLDDEDSDADKSPAPFTKRAKIVNPAATSSVNGNPKE 60
           MADSAEEFEPLFDYSRVQPPSVVCLDDEDSDADKSPAPFTKRAKIVNPAATSSVNGNPKE
Sbjct: 1   MADSAEEFEPLFDYSRVQPPSVVCLDDEDSDADKSPAPFTKRAKIVNPAATSSVNGNPKE 60

Query: 61  KQVEIEDKEEDWLPPPPKVLVDAENRHVEDSTLKELRLKKQELASVALSAKNLLREVEES 120
           KQVEIEDKEEDWLPPPPKVLVDAENRHVEDSTLKELRLKKQELASVALSAKNLLREVEES
Sbjct: 61  KQVEIEDKEEDWLPPPPKVLVDAENRHVEDSTLKELRLKKQELASVALSAKNLLREVEES 120

Query: 121 AKVDVGNTSMDPLEPDLDVQTPVASKERAKIVISVRDSDKKELKQYRLFVDDKFERLFKL 180
           AKVDVGNTSMDPLEPDLDVQTPVASKERAKIVISVRDSDK+ELKQYRLFVDDKFERLFKL
Sbjct: 121 AKVDVGNTSMDPLEPDLDVQTPVASKERAKIVISVRDSDKEELKQYRLFVDDKFERLFKL 180

Query: 181 YADKLKIDPKSLVFVFDGDKVGPDDTPGGLGMEDDDMIEVNIKSS 226
           YADKLKIDPKSLVFVFDGDKVGPDDTPGGLGMEDDDMIEVNIKSS
Sbjct: 181 YADKLKIDPKSLVFVFDGDKVGPDDTPGGLGMEDDDMIEVNIKSS 225

[Close]

BLAST of CSPI05G25630 vs. NCBI nr
Match: KGN52648.2 (hypothetical protein Csa_008468 [Cucumis sativus])

HSP 1 Score: 418.7 bits (1075), Expect = 3.2e-113
Identity = 220/225 (97.78%), Postives = 221/225 (98.22%), Query Frame = 0


Query: 1   MADSAEEFEPLFDYSRVQPPSVVCLDDEDSDADKSPAPFTKRAKIVNPAATSSVNGNPKE 60
           MADSAEEFEPLFDYSRVQPPSVVCLD    DADKSPAPFTKRAKIVNPAATSSVNGNPKE
Sbjct: 1   MADSAEEFEPLFDYSRVQPPSVVCLD----DADKSPAPFTKRAKIVNPAATSSVNGNPKE 60

Query: 61  KQVEIEDKEEDWLPPPPKVLVDAENRHVEDSTLKELRLKKQELASVALSAKNLLREVEES 120
           KQVEIEDKEEDWLPPPPKVLVDAENRHVEDSTLKELRLKKQELASVALSAKNLLREVEES
Sbjct: 61  KQVEIEDKEEDWLPPPPKVLVDAENRHVEDSTLKELRLKKQELASVALSAKNLLREVEES 120

Query: 121 AKVDVGNTSMDPLEPDLDVQTPVASKERAKIVISVRDSDKKELKQYRLFVDDKFERLFKL 180
           AKVDVGNTSMDPLEPDLDVQTPVASKERAKIVISVRDSDK+ELKQYRLFVDDKFERLFKL
Sbjct: 121 AKVDVGNTSMDPLEPDLDVQTPVASKERAKIVISVRDSDKEELKQYRLFVDDKFERLFKL 180

Query: 181 YADKLKIDPKSLVFVFDGDKVGPDDTPGGLGMEDDDMIEVNIKSS 226
           YADKLKIDPKSLVFVFDGDKVGPDDTPGGLGMEDDDMIEVNIKSS
Sbjct: 181 YADKLKIDPKSLVFVFDGDKVGPDDTPGGLGMEDDDMIEVNIKSS 221

[Close]

BLAST of CSPI05G25630 vs. NCBI nr
Match: XP_008446647.1 (PREDICTED: uncharacterized protein LOC103489317 isoform X1 [Cucumis melo] >KAA0034593.1 putative Ubiquitin-like superfamily protein [Cucumis melo var. makuwa] >TYK09144.1 putative Ubiquitin-like superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 401.7 bits (1031), Expect = 4.0e-108
Identity = 209/225 (92.89%), Postives = 214/225 (95.11%), Query Frame = 0


Query: 1   MADSAEEFEPLFDYSRVQPPSVVCLDDEDSDADKSPAPFTKRAKIVNPAATSSVNGNPKE 60
           MADSAEEFEPLFDYSRVQPPSVVCLDDEDSDADKSPAPFTKRAKI N AATSSVNGNPKE
Sbjct: 1   MADSAEEFEPLFDYSRVQPPSVVCLDDEDSDADKSPAPFTKRAKIANLAATSSVNGNPKE 60

Query: 61  KQVEIEDKEEDWLPPPPKVLVDAENRHVEDSTLKELRLKKQELASVALSAKNLLREVEES 120
           KQVEIED EEDWLPPPPKVLVD  NR  EDSTLKELRLKKQELASVALSAKNLLREVEES
Sbjct: 61  KQVEIEDNEEDWLPPPPKVLVDGNNRRGEDSTLKELRLKKQELASVALSAKNLLREVEES 120

Query: 121 AKVDVGNTSMDPLEPDLDVQTPVASKERAKIVISVRDSDKKELKQYRLFVDDKFERLFKL 180
           AKVDVGNTS D LEPDLDVQTPV SKERAKIVISVRDSDK+ELKQYRLFVDD FERLFK+
Sbjct: 121 AKVDVGNTSKDSLEPDLDVQTPVVSKERAKIVISVRDSDKEELKQYRLFVDDNFERLFKI 180

Query: 181 YADKLKIDPKSLVFVFDGDKVGPDDTPGGLGMEDDDMIEVNIKSS 226
           YADKLKIDP+SLVFVFDGDK+GP+DTPGGLGMEDDDMIEVNIKSS
Sbjct: 181 YADKLKIDPESLVFVFDGDKIGPNDTPGGLGMEDDDMIEVNIKSS 225

[Close]

BLAST of CSPI05G25630 vs. NCBI nr
Match: XP_038891511.1 (uncharacterized protein LOC120080907 [Benincasa hispida])

HSP 1 Score: 382.9 bits (982), Expect = 1.9e-102
Identity = 203/225 (90.22%), Postives = 211/225 (93.78%), Query Frame = 0


Query: 1   MADSAEEFEPLFDYSRVQPPSVVCLDDEDSDADKSPAPFTKRAKIVNPAATSSVNGNPKE 60
           MADSAEEFEPLFDYSRVQP SVVCLDDEDSDADKSPAPF+KR KIVNPAATS V+ NPKE
Sbjct: 1   MADSAEEFEPLFDYSRVQPRSVVCLDDEDSDADKSPAPFSKRVKIVNPAATSLVDSNPKE 60

Query: 61  KQVEIEDKEEDWLPPPPKVLVDAENRHVEDSTLKELRLKKQELASVALSAKNLLREVEES 120
           KQVEIEDKEEDWLPPPPKVLVDAEN   EDSTLKELRLKKQELASVALSAKNLLREVEES
Sbjct: 61  KQVEIEDKEEDWLPPPPKVLVDAENMCGEDSTLKELRLKKQELASVALSAKNLLREVEES 120

Query: 121 AKVDVGNTSMDPLEPDLDVQTPVASKERAKIVISVRDSDKKELKQYRLFVDDKFERLFKL 180
           AKVDVGN   D LEPDLDVQTP+ASKERAKIVISVRDSDK+ELKQ+RLFVDDKFERLFK+
Sbjct: 121 AKVDVGN-KPDSLEPDLDVQTPIASKERAKIVISVRDSDKEELKQFRLFVDDKFERLFKM 180

Query: 181 YADKLKIDPKSLVFVFDGDKVGPDDTPGGLGMEDDDMIEVNIKSS 226
           YADK KIDPK+L+FVFDGDKVGPDDTP  LGMEDDDMIEVNIKSS
Sbjct: 181 YADKHKIDPKNLIFVFDGDKVGPDDTPVSLGMEDDDMIEVNIKSS 224

[Close]

BLAST of CSPI05G25630 vs. NCBI nr
Match: XP_023553495.1 (uncharacterized protein LOC111810893 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 354.0 bits (907), Expect = 9.7e-94
Identity = 185/225 (82.22%), Postives = 203/225 (90.22%), Query Frame = 0


Query: 1   MADSAEEFEPLFDYSRVQPPSVVCLDDEDSDADKSPAPFTKRAKIVNPAATSSVNGNPKE 60
           MAD AEEFEPLFDYSRVQP SV CLDDEDSDA  SP PF+KR++I+NPA TS V+GNPKE
Sbjct: 1   MADYAEEFEPLFDYSRVQPRSVDCLDDEDSDACMSPEPFSKRSRILNPAVTSLVDGNPKE 60

Query: 61  KQVEIEDKEEDWLPPPPKVLVDAENRHVEDSTLKELRLKKQELASVALSAKNLLREVEES 120
           KQVEI D+EEDWLPPPPKVLVDA+N   EDSTLKELRLKK ELA VALSAKNLLREVEES
Sbjct: 61  KQVEIVDEEEDWLPPPPKVLVDAKNMCGEDSTLKELRLKKLELALVALSAKNLLREVEES 120

Query: 121 AKVDVGNTSMDPLEPDLDVQTPVASKERAKIVISVRDSDKKELKQYRLFVDDKFERLFKL 180
           AK+DVGNT  DPLEP LD Q P+ASKERAKIVISVRDS+K+ELKQ+RLF+DDKFERLFK+
Sbjct: 121 AKMDVGNTPQDPLEPALDDQIPIASKERAKIVISVRDSEKEELKQFRLFMDDKFERLFKM 180

Query: 181 YADKLKIDPKSLVFVFDGDKVGPDDTPGGLGMEDDDMIEVNIKSS 226
           YA+K KIDPKSLVF+FDGDKVGPDDTP GLGMEDDDMI+VNI+ S
Sbjct: 181 YAEKRKIDPKSLVFIFDGDKVGPDDTPIGLGMEDDDMIDVNIRPS 225

[Close]

BLAST of CSPI05G25630 vs. TAIR 10
Match: AT1G68185.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 175.6 bits (444), Expect = 4.4e-44
Identity = 104/225 (46.22%), Postives = 141/225 (62.67%), Query Frame = 0


Query: 1   MADSAEEFEPLFDYSRVQPPSVVCLDDEDSDADKSPAPFTKRAKIVNPAATSSVNGNPKE 60
           M    E+ EPLFDY RVQP + VC+DD+D DA  +P P  K+AK      + +V     +
Sbjct: 1   MGGEGEDLEPLFDYRRVQPANFVCIDDDDDDASVTPIP--KKAK-----TSQTVEKLDDD 60

Query: 61  KQVEIEDKEEDWLPPPPKVLVDAENRHVEDSTLKELRLKKQELASVALSAKNLLREVEES 120
            +V     ++DWL PPPKV+ D     VEDST+K LR KK EL S   +  ++++EVEES
Sbjct: 61  VKVIEVTGDDDWLLPPPKVIFDKSKDSVEDSTIKALRSKKMELMSFTKTVGDVMQEVEES 120

Query: 121 AKVDVGNTSMDPLEPDLDVQTPVASKERAKIVISVRDSDKKELKQYRLFVDDKFERLFKL 180
           AK +V   S +P            + +RAKIVI+++D D +  K  R+F D+KFER+ KL
Sbjct: 121 AKREV-EESRNPSSETAAQLPSEPTNDRAKIVITIQDKDGQ--KTLRVFADEKFERVIKL 180

Query: 181 YADKLKIDPKSLVFVFDGDKVGPDDTPGGLGMEDDDMIEVNIKSS 226
           Y DK K+DP++LVF+FDGDK+ P  TP  LGMED DMIEV+ K +
Sbjct: 181 YTDKAKLDPQNLVFIFDGDKIDPSTTPSELGMEDHDMIEVHTKKT 215

[Close]

BLAST of CSPI05G25630 vs. TAIR 10
Match: AT5G55856.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 44.3 bits (103), Expect = 1.5e-04
Identity = 19/54 (35.19%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 166 YRLFVDDKFERLFKLYADKLKIDPKSLVFVFDGDKVGPDDTPGGLGMEDDDMIE 220
           +R+  D +  ++   Y+DK+ ++  +L F+FDG+++  + TP  LG+ED+D IE
Sbjct: 29  FRIKRDVELRKMMHAYSDKVGVEMSTLRFLFDGNRIKLNQTPNELGLEDEDEIE 82

[Close]

BLAST of CSPI05G25630 vs. TAIR 10
Match: AT4G26840.1 (small ubiquitin-like modifier 1 )

HSP 1 Score: 42.0 bits (97), Expect = 7.6e-04
Identity = 23/71 (32.39%), Postives = 39/71 (54.93%), Query Frame = 0


Query: 149 AKIVISVRDSDKKELKQYRLFVDDKFERLFKLYADKLKIDPKSLVFVFDGDKVGPDDTPG 208
           A I + V+  D  E+  +R+    + ++L   Y D+  +D  S+ F+FDG ++  + TP 
Sbjct: 16  AHINLKVKGQDGNEV-FFRIKRSTQLKKLMNAYCDRQSVDMNSIAFLFDGRRLRAEQTPD 75

Query: 209 GLGMEDDDMIE 220
            L MED D I+
Sbjct: 76  ELDMEDGDEID 85

The following BLAST results are available for this feature:

BLAST of CSPI05G25630 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P55853	3.9e-05	42.86	Small ubiquitin-related modifier OS=Caenorhabditis elegans OX=6239 GN=smo-1 PE=1...	[more]
Q9VCP1	5.7e-04	37.74	Uncharacterized protein CG4449 OS=Drosophila melanogaster OX=7227 GN=CG4449 PE=1...	[more]

BLAST of CSPI05G25630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWH7	1.8e-117	99.56	Rad60-SLD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G610500 P...	[more]
A0A5A7SVU4	2.0e-108	92.89	Putative Ubiquitin-like superfamily protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3BF31	2.0e-108	92.89	uncharacterized protein LOC103489317 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1JEF8	2.0e-92	80.44	uncharacterized protein LOC111483658 OS=Cucurbita maxima OX=3661 GN=LOC111483658...	[more]
A0A6J1H158	2.6e-92	81.33	uncharacterized protein LOC111458628 OS=Cucurbita moschata OX=3662 GN=LOC1114586...	[more]

BLAST of CSPI05G25630 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004135076.1	3.7e-117	99.56	uncharacterized protein LOC101214853 [Cucumis sativus]	[more]
KGN52648.2	3.2e-113	97.78	hypothetical protein Csa_008468 [Cucumis sativus]	[more]
XP_008446647.1	4.0e-108	92.89	PREDICTED: uncharacterized protein LOC103489317 isoform X1 [Cucumis melo] >KAA00...	[more]
XP_038891511.1	1.9e-102	90.22	uncharacterized protein LOC120080907 [Benincasa hispida]	[more]
XP_023553495.1	9.7e-94	82.22	uncharacterized protein LOC111810893 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CSPI05G25630 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68185.1	4.4e-44	46.22	Ubiquitin-like superfamily protein	[more]
AT5G55856.1	1.5e-04	35.19	Ubiquitin-like superfamily protein	[more]
AT4G26840.1	7.6e-04	32.39	small ubiquitin-like modifier 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022617	Rad60/SUMO-like domain	PFAM	PF11976	Rad60-SLD	coord: 151..222 e-value: 2.7E-12 score: 46.3
None	No IPR available	GENE3D	3.10.20.90		coord: 144..223 e-value: 1.2E-19 score: 72.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..75
None	No IPR available	PANTHER	PTHR47813	UBIQUITIN-LIKE SUPERFAMILY PROTEIN	coord: 1..225
None	No IPR available	CDD	cd01763	Ubl_SUMO_like	coord: 150..220 e-value: 5.65002E-22 score: 83.7837
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 142..222

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G25630.1	CSPI05G25630.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009451	RNA modification
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0008270	zinc ion binding