CSPI05G25540 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI05G25540
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr5: 24761673 .. 24762185 (+)
RNA-Seq Expression	CSPI05G25540
Synteny	CSPI05G25540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTTGACTTGGCCCTTCTTCCTTATTCTTCACTTCTAATAATCCAATCTCATCAACCTACACATTTACTCTTAGATGGTGAGGGTATTGAGAGATTTCCACGGCGGAGGATTGACGATCGCTTCCCCAGTTTTGATATTTTGGGCGGTGGTGCTTTCGATTTCGATCATCACAACAGTTATATTCTCCTGCACCGGCGGCAGCGGTGCTAAAGATAAGGACACGTCCCATGCCGATACTTACGGTGGTGCTGCTTGTGCTGCCGGCTGTGGAGGCGGCTGCGGCGCTTAATCTCATCCAACAACGGAAATTTTCACCACCAGATCGATGTAATTTGATTTCCTTTTTCTCACTTTTCAATTCTTCTCCTTTTAGGAGGGTGATGATTATATTATAGGGATTTTCAGTTTGGTTGGTTTAAAATATGTGAAACAAATTGACATATTTGATAAAGAAAATGTAAAGATTTGAAATATTTGAATGAAAGGGTTCGTTAAACACGTTGTGTTTATC

mRNA sequence

CTCTTGACTTGGCCCTTCTTCCTTATTCTTCACTTCTAATAATCCAATCTCATCAACCTACACATTTACTCTTAGATGGTGAGGGTATTGAGAGATTTCCACGGCGGAGGATTGACGATCGCTTCCCCAGTTTTGATATTTTGGGCGGTGGTGCTTTCGATTTCGATCATCACAACAGTTATATTCTCCTGCACCGGCGGCAGCGGTGCTAAAGATAAGGACACGTCCCATGCCGATACTTACGGTGGTGCTGCTTGTGCTGCCGGCTGTGGAGGCGGCTGCGGCGCTTAATCTCATCCAACAACGGAAATTTTCACCACCAGATCGATGTAATTTGATTTCCTTTTTCTCACTTTTCAATTCTTCTCCTTTTAGGAGGGTGATGATTATATTATAGGGATTTTCAGTTTGGTTGGTTTAAAATATGTGAAACAAATTGACATATTTGATAAAGAAAATGTAAAGATTTGAAATATTTGAATGAAAGGGTTCGTTAAACACGTTGTGTTTATC

Coding sequence (CDS)

ATGGTGAGGGTATTGAGAGATTTCCACGGCGGAGGATTGACGATCGCTTCCCCAGTTTTGATATTTTGGGCGGTGGTGCTTTCGATTTCGATCATCACAACAGTTATATTCTCCTGCACCGGCGGCAGCGGTGCTAAAGATAAGGACACGTCCCATGCCGATACTTACGGTGGTGCTGCTTGTGCTGCCGGCTGTGGAGGCGGCTGCGGCGCTTAA

Protein sequence

MVRVLRDFHGGGLTIASPVLIFWAVVLSISIITTVIFSCTGGSGAKDKDTSHADTYGGAACAAGCGGGCGA*

Homology

[Close]

BLAST of CSPI05G25540 vs. ExPASy TrEMBL
Match: A0A0A0KUK0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G610410 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 4.4e-30
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MVRVLRDFHGGGLTIASPVLIFWAVVLSISIITTVIFSCTGGSGAKDKDTSHADTYGGAA 60
          MVRVLRDFHGGGLTIASPVLIFWAVVLSISIITTVIFSCTGGSGAKDKDTSHADTYGGAA
Sbjct: 1  MVRVLRDFHGGGLTIASPVLIFWAVVLSISIITTVIFSCTGGSGAKDKDTSHADTYGGAA 60

Query: 61 CAAGCGGGCGA 72
          CAAGCGGGCGA
Sbjct: 61 CAAGCGGGCGA 71

[Close]

BLAST of CSPI05G25540 vs. ExPASy TrEMBL
Match: A0A5D3CFJ4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001270 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.6e-27
Identity = 67/71 (94.37%), Postives = 68/71 (95.77%), Query Frame = 0


Query: 1  MVRVLRDFHGGGLTIASPVLIFWAVVLSISIITTVIFSCTGGSGAKDKDTSHADTYGGAA 60
          MVRVL DFHGGGLTIASPV IFWAVV+SISIITTVIFSCTGGSGAKDKDTSHADT GGAA
Sbjct: 1  MVRVLADFHGGGLTIASPVFIFWAVVVSISIITTVIFSCTGGSGAKDKDTSHADTCGGAA 60

Query: 61 CAAGCGGGCGA 72
          CAAGCGGGCGA
Sbjct: 61 CAAGCGGGCGA 71

[Close]

BLAST of CSPI05G25540 vs. ExPASy TrEMBL
Match: A0A2P5CU17 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_123780 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.1e-07
Identity = 34/73 (46.58%), Postives = 50/73 (68.49%), Query Frame = 0


Query: 1  MVRVLRDFHG-GGLTIASPVLIFWAVVLSISIITTVIFSCTGGSGAKDKDTSHADTYGGA 60
          MVR  ++  G GG +++  VL+ WA ++S+++I+ V+F C  G+  +    +H DTYGG 
Sbjct: 1  MVREWKELAGEGGESLSGFVLVLWAALVSLALISAVVFGCADGTSKEKASAAHTDTYGGT 60

Query: 61 ACAAGC-GGGCGA 72
          ACAAGC GGGCGA
Sbjct: 61 ACAAGCGGGGCGA 73

[Close]

BLAST of CSPI05G25540 vs. ExPASy TrEMBL
Match: A0A5D2IB54 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D12G172100v1 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.1e-07
Identity = 32/57 (56.14%), Postives = 44/57 (77.19%), Query Frame = 0


Query: 15 IASPVLIFWAVVLSISIITTVIFSCTGGSGAKDKDTSHADTYGGAACAAGCGGGCGA 72
          ++S VL+FWAV+ ++S+IT +IFSC GG+  +    +HADTY G+ CAAGCG GCGA
Sbjct: 13 LSSAVLMFWAVLAALSLITAIIFSCAGGASKEKASATHADTY-GSTCAAGCGAGCGA 68

[Close]

BLAST of CSPI05G25540 vs. ExPASy TrEMBL
Match: A0A5J5NYW8 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D12G163000v1 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.1e-07
Identity = 32/57 (56.14%), Postives = 44/57 (77.19%), Query Frame = 0


Query: 15 IASPVLIFWAVVLSISIITTVIFSCTGGSGAKDKDTSHADTYGGAACAAGCGGGCGA 72
          ++S VL+FWAV+ ++S+IT +IFSC GG+  +    +HADTY G+ CAAGCG GCGA
Sbjct: 13 LSSAVLMFWAVLAALSLITAIIFSCAGGASKEKASATHADTY-GSTCAAGCGAGCGA 68

[Close]

BLAST of CSPI05G25540 vs. NCBI nr
Match: KGN52107.1 (hypothetical protein Csa_007826 [Cucumis sativus])

HSP 1 Score: 139.8 bits (351), Expect = 9.1e-30
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MVRVLRDFHGGGLTIASPVLIFWAVVLSISIITTVIFSCTGGSGAKDKDTSHADTYGGAA 60
          MVRVLRDFHGGGLTIASPVLIFWAVVLSISIITTVIFSCTGGSGAKDKDTSHADTYGGAA
Sbjct: 1  MVRVLRDFHGGGLTIASPVLIFWAVVLSISIITTVIFSCTGGSGAKDKDTSHADTYGGAA 60

Query: 61 CAAGCGGGCGA 72
          CAAGCGGGCGA
Sbjct: 61 CAAGCGGGCGA 71

[Close]

BLAST of CSPI05G25540 vs. NCBI nr
Match: KAA0034584.1 (hypothetical protein E6C27_scaffold65G006000 [Cucumis melo var. makuwa] >TYK09136.1 hypothetical protein E5676_scaffold475G001270 [Cucumis melo var. makuwa])

HSP 1 Score: 131.3 bits (329), Expect = 3.3e-27
Identity = 67/71 (94.37%), Postives = 68/71 (95.77%), Query Frame = 0


Query: 1  MVRVLRDFHGGGLTIASPVLIFWAVVLSISIITTVIFSCTGGSGAKDKDTSHADTYGGAA 60
          MVRVL DFHGGGLTIASPV IFWAVV+SISIITTVIFSCTGGSGAKDKDTSHADT GGAA
Sbjct: 1  MVRVLADFHGGGLTIASPVFIFWAVVVSISIITTVIFSCTGGSGAKDKDTSHADTCGGAA 60

Query: 61 CAAGCGGGCGA 72
          CAAGCGGGCGA
Sbjct: 61 CAAGCGGGCGA 71

[Close]

BLAST of CSPI05G25540 vs. NCBI nr
Match: KAG6601275.1 (hypothetical protein SDJN03_06508, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 89.7 bits (221), Expect = 1.1e-14
Identity = 53/73 (72.60%), Postives = 57/73 (78.08%), Query Frame = 0


Query: 1  MVRVLRDFH---GGGLTIASPVLIFWAVVLSISIITTVIFSCTGGSGAKDKDTSHADTYG 60
          MVRVLRDF    GGG   A  VLI WA V+SISII+TVIFSCTGG G KDK +SH+DTY 
Sbjct: 1  MVRVLRDFSGEGGGGFINAPTVLILWAAVVSISIISTVIFSCTGG-GPKDKTSSHSDTY- 60

Query: 61 GAACAAGCGGGCG 71
          GAACAAGCG GCG
Sbjct: 61 GAACAAGCGAGCG 71

[Close]

BLAST of CSPI05G25540 vs. NCBI nr
Match: PON64501.1 (hypothetical protein PanWU01x14_123780 [Parasponia andersonii])

HSP 1 Score: 65.5 bits (158), Expect = 2.2e-07
Identity = 34/73 (46.58%), Postives = 50/73 (68.49%), Query Frame = 0


Query: 1  MVRVLRDFHG-GGLTIASPVLIFWAVVLSISIITTVIFSCTGGSGAKDKDTSHADTYGGA 60
          MVR  ++  G GG +++  VL+ WA ++S+++I+ V+F C  G+  +    +H DTYGG 
Sbjct: 1  MVREWKELAGEGGESLSGFVLVLWAALVSLALISAVVFGCADGTSKEKASAAHTDTYGGT 60

Query: 61 ACAAGC-GGGCGA 72
          ACAAGC GGGCGA
Sbjct: 61 ACAAGCGGGGCGA 73

[Close]

BLAST of CSPI05G25540 vs. NCBI nr
Match: KAB1999453.1 (hypothetical protein ES319_D12G163000v1 [Gossypium barbadense] >KAG4116068.1 hypothetical protein ERO13_D12G146500v2 [Gossypium hirsutum] >TYG41397.1 hypothetical protein ES288_D12G172100v1 [Gossypium darwinii] >TYH39323.1 hypothetical protein ES332_D12G172100v1 [Gossypium tomentosum] >TYI51281.1 hypothetical protein E1A91_D12G164800v1 [Gossypium mustelinum])

HSP 1 Score: 65.5 bits (158), Expect = 2.2e-07
Identity = 32/57 (56.14%), Postives = 44/57 (77.19%), Query Frame = 0


Query: 15 IASPVLIFWAVVLSISIITTVIFSCTGGSGAKDKDTSHADTYGGAACAAGCGGGCGA 72
          ++S VL+FWAV+ ++S+IT +IFSC GG+  +    +HADTY G+ CAAGCG GCGA
Sbjct: 13 LSSAVLMFWAVLAALSLITAIIFSCAGGASKEKASATHADTY-GSTCAAGCGAGCGA 68

[Close]

BLAST of CSPI05G25540 vs. TAIR 10
Match: AT1G68238.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 40.8 bits (94), Expect = 5.4e-04
Identity = 23/51 (45.10%), Postives = 31/51 (60.78%), Query Frame = 0


Query: 20 LIFWAVVLSISIITTVIFSCTGGSGAKDKDTSHADTYGGAACAAGCGGGCG 71
          L  WA V++ S+I  VIFSC+  +     +    D   G++CAAGCGGGCG
Sbjct: 18 LYIWAAVVAFSVIAAVIFSCSDRASKPHTN----DDVNGSSCAAGCGGGCG 64

The following BLAST results are available for this feature:

BLAST of CSPI05G25540 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI05G25540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUK0	4.4e-30	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G610410 PE=4 SV=1	[more]
A0A5D3CFJ4	1.6e-27	94.37	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A2P5CU17	1.1e-07	46.58	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_123780 PE...	[more]
A0A5D2IB54	1.1e-07	56.14	Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D12G172100v1 P...	[more]
A0A5J5NYW8	1.1e-07	56.14	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D12G163000v1 PE...	[more]

BLAST of CSPI05G25540 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN52107.1	9.1e-30	100.00	hypothetical protein Csa_007826 [Cucumis sativus]	[more]
KAA0034584.1	3.3e-27	94.37	hypothetical protein E6C27_scaffold65G006000 [Cucumis melo var. makuwa] >TYK0913...	[more]
KAG6601275.1	1.1e-14	72.60	hypothetical protein SDJN03_06508, partial [Cucurbita argyrosperma subsp. sorori...	[more]
PON64501.1	2.2e-07	46.58	hypothetical protein PanWU01x14_123780 [Parasponia andersonii]	[more]
KAB1999453.1	2.2e-07	56.14	hypothetical protein ES319_D12G163000v1 [Gossypium barbadense] >KAG4116068.1 hyp...	[more]

BLAST of CSPI05G25540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68238.1	5.4e-04	45.10	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37199	TRANSMEMBRANE PROTEIN	coord: 1..71
None	No IPR available	PANTHER	PTHR37199:SF5	TRANSMEMBRANE PROTEIN	coord: 1..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G25540.1	CSPI05G25540.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane