CSPI05G25500 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI05G25500
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionF-box domain-containing protein
LocationChr5: 24746602 .. 24747357 (+)
RNA-Seq ExpressionCSPI05G25500
SyntenyCSPI05G25500
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGATCACTCACAAGTCACTCTTTGGCTCTCTTTTTCTCACACCCTCTCTCTTCATCGGAATTGGTCCCGTCGAAGTTGCTCGTATGGACTCATCTTGCCGAAAAGATGAGGAGGATGTATGCCGTAGAAGAAGACGCAGAGGAAGAGAAAAGGGAGAAGCAGAGGGGAAACAAAAAAACAGTACTCGATGATAACATCAGCAAAAGACATTTTGACATTAAAAAAAAAAGAAGAAAAAAACGGATAGTTTGCATTTCGACTTTTGGGCTATTAATTCAAAAGATTTGTAAAAGGGACACTGTGGAGAGACAAGAATCGAGTCCAGTGGGGACGGGGTTGCGGCTATTCCGCCTCCAAGTTCTGCTCATGCAAAATTCTTCACCTCACCGATCGTCGATTTCTCAGACTGTATTCTCATTCAAGGCTCACCCCTCATATTTTTTCTCGCTGGGGAACTGCTGACTTCCCACTTCGTTCACCCCCAAATCCTTAGGTTTGTGATTTCTCTTCCCTCCGTCTCATTCTACTTGGGTCTTTCTGCATCTGACGATTTCAAGTCATGGGTCTTGCGAAGCGATTCATTTGCTGCGTTTTCACGTGTCTTTCTTCCATCTGATCAATTGGGTTTTATTTCTTGTATGGGATATTGTATAGTTTTAGCGGGGAGAATGAAGTACTGGGGATTTGGTTTTAGTGAACTCGTGCAGTATTTGCTCCATCTGTCTTCACTCGTTCTTCCACTCTATCTATAG

mRNA sequence

ATGTTGATCACTCACAAGTCACTCTTTGGCTCTCTTTTTCTCACACCCTCTCTCTTCATCGGAATTGGTCCCGTCGAAGTTGCTCGTATGGACTCATCTTGCCGAAAAGATGAGGAGGATGGACACTGTGGAGAGACAAGAATCGAGTCCAGTGGGGACGGGGTTGCGGCTATTCCGCCTCCAAGTTCTGCTCATGCAAAATTCTTCACCTCACCGATCGTCGATTTCTCAGACTGTATTCTCATTCAAGGCTCACCCCTCATATTTTTTCTCGCTGGGGAACTGCTGACTTCCCACTTCGTTCACCCCCAAATCCTTAGGTTTGTGATTTCTCTTCCCTCCGTCTCATTCTACTTGGGTCTTTCTGCATCTGACGATTTCAAGTCATGGGTCTTGCGAAGCGATTCATTTGCTGCGTTTTCACGTGTCTTTCTTCCATCTGATCAATTGGGTTTTATTTCTTGTATGGGATATTGTATAGTTTTAGCGGGGAGAATGAAGTACTGGGGATTTGGTTTTAGTGAACTCGTGCAGTATTTGCTCCATCTGTCTTCACTCGTTCTTCCACTCTATCTATAG

Coding sequence (CDS)

ATGTTGATCACTCACAAGTCACTCTTTGGCTCTCTTTTTCTCACACCCTCTCTCTTCATCGGAATTGGTCCCGTCGAAGTTGCTCGTATGGACTCATCTTGCCGAAAAGATGAGGAGGATGGACACTGTGGAGAGACAAGAATCGAGTCCAGTGGGGACGGGGTTGCGGCTATTCCGCCTCCAAGTTCTGCTCATGCAAAATTCTTCACCTCACCGATCGTCGATTTCTCAGACTGTATTCTCATTCAAGGCTCACCCCTCATATTTTTTCTCGCTGGGGAACTGCTGACTTCCCACTTCGTTCACCCCCAAATCCTTAGGTTTGTGATTTCTCTTCCCTCCGTCTCATTCTACTTGGGTCTTTCTGCATCTGACGATTTCAAGTCATGGGTCTTGCGAAGCGATTCATTTGCTGCGTTTTCACGTGTCTTTCTTCCATCTGATCAATTGGGTTTTATTTCTTGTATGGGATATTGTATAGTTTTAGCGGGGAGAATGAAGTACTGGGGATTTGGTTTTAGTGAACTCGTGCAGTATTTGCTCCATCTGTCTTCACTCGTTCTTCCACTCTATCTATAG

Protein sequence

MLITHKSLFGSLFLTPSLFIGIGPVEVARMDSSCRKDEEDGHCGETRIESSGDGVAAIPPPSSAHAKFFTSPIVDFSDCILIQGSPLIFFLAGELLTSHFVHPQILRFVISLPSVSFYLGLSASDDFKSWVLRSDSFAAFSRVFLPSDQLGFISCMGYCIVLAGRMKYWGFGFSELVQYLLHLSSLVLPLYL*
Homology
[Close]
BLAST of CSPI05G25500 vs. ExPASy TrEMBL
Match: A0A5D3CBC5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001220 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 2.5e-56
Identity = 114/136 (83.82%), Postives = 119/136 (87.50%), Query Frame = 0 

Query: 45  ETRIESSGDGVAAIPPPSSAHAKFFTSPIVDFSDCILIQGSPLIFFLAGELLTSHFVHPQ 104
           ETRIE SG GVAAIPPPSSAHAKFFTSPIVD SDCILIQG PLIF LA +LLTSHFV PQ
Sbjct: 9   ETRIEFSGGGVAAIPPPSSAHAKFFTSPIVDVSDCILIQGPPLIFLLARKLLTSHFVRPQ 68

Query: 105 ILRFVISLPSVSFYLGLSASDDFKSWVLRSDSFAAFSRVFLPSDQLGFISCMGYCIVLAG 164
           ILRFV SLPSVS YLGLSAS DF SWVL++DSFA FSRV LP DQL FISCMGYCIVL G
Sbjct: 69  ILRFVSSLPSVSVYLGLSASYDFNSWVLQNDSFAPFSRVLLPPDQLSFISCMGYCIVLVG 128

Query: 165 RMKYWGFGFSELVQYL 181
           RMKYWGFGFS+L QY+
Sbjct: 129 RMKYWGFGFSDLAQYV 144

[Close]
BLAST of CSPI05G25500 vs. ExPASy TrEMBL
Match: A0A0A0KT87 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G610380 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 2.6e-53
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0 

Query: 1   MLITHKSLFGSLFLTPSLFIGIGPVEVARMDSSCRKDEEDGHCGETRIESSGDGVAAIPP 60
           MLITHKSLFGSLFLTPSLFIGIGPVEVARMDSSCRKDEEDGHCGETRIESSGDGVAAIPP
Sbjct: 1   MLITHKSLFGSLFLTPSLFIGIGPVEVARMDSSCRKDEEDGHCGETRIESSGDGVAAIPP 60

Query: 61  PSSAHAKFFTSPIVDFSDCILIQGSPLIFFLAGELLTSHFVHPQILR 108
           PSSAHAKFFTSPIVDFSDCILIQGSPLIFFLAGELLTSHFVHPQILR
Sbjct: 61  PSSAHAKFFTSPIVDFSDCILIQGSPLIFFLAGELLTSHFVHPQILR 107

[Close]
BLAST of CSPI05G25500 vs. NCBI nr
Match: KAA0034579.1 (hypothetical protein E6C27_scaffold65G005950 [Cucumis melo var. makuwa] >TYK09131.1 hypothetical protein E5676_scaffold475G001220 [Cucumis melo var. makuwa])

HSP 1 Score: 228.4 bits (581), Expect = 5.2e-56
Identity = 114/136 (83.82%), Postives = 119/136 (87.50%), Query Frame = 0 

Query: 45  ETRIESSGDGVAAIPPPSSAHAKFFTSPIVDFSDCILIQGSPLIFFLAGELLTSHFVHPQ 104
           ETRIE SG GVAAIPPPSSAHAKFFTSPIVD SDCILIQG PLIF LA +LLTSHFV PQ
Sbjct: 9   ETRIEFSGGGVAAIPPPSSAHAKFFTSPIVDVSDCILIQGPPLIFLLARKLLTSHFVRPQ 68

Query: 105 ILRFVISLPSVSFYLGLSASDDFKSWVLRSDSFAAFSRVFLPSDQLGFISCMGYCIVLAG 164
           ILRFV SLPSVS YLGLSAS DF SWVL++DSFA FSRV LP DQL FISCMGYCIVL G
Sbjct: 69  ILRFVSSLPSVSVYLGLSASYDFNSWVLQNDSFAPFSRVLLPPDQLSFISCMGYCIVLVG 128

Query: 165 RMKYWGFGFSELVQYL 181
           RMKYWGFGFS+L QY+
Sbjct: 129 RMKYWGFGFSDLAQYV 144

The following BLAST results are available for this feature:
BLAST of CSPI05G25500 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI05G25500 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CBC52.5e-5683.82Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KT872.6e-53100.00F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G610380 PE=4 ... [more]
BLAST of CSPI05G25500 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0034579.15.2e-5683.82hypothetical protein E6C27_scaffold65G005950 [Cucumis melo var. makuwa] >TYK0913... [more]
BLAST of CSPI05G25500 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G25500.1CSPI05G25500.1mRNA