CSPI05G25300 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI05G25300
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	CLAVATA3/ESR (CLE)-related protein 27
Location	Chr5: 24623224 .. 24623832 (-)
RNA-Seq Expression	CSPI05G25300
Synteny	CSPI05G25300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGCTCTTATATCTCTAACCTAAGCCTCAAATCCATTTCCATACACAATACAATTTCCTCTCTATTTCTTTTTTCTTTTTTTCTTTTTTTTATACCAATCTCAATTTACTATGACATTCATACACGTCCACCCAGATAGAGGACGGATTTGAGTGTTTTTGAAATATTTCAAGTTTCTTTTGTTTTTTTTTTTTTTTTTCTTTGTGGGTTTTTCTTCCGGCCGCCGGCAAAGCCACCATGTTTAACAGAAGAATCACCACTTCCTCCTCCTCTTCCTCCACCTCTGCTTTTGCCATACTAATTTTGATCCTGTGGGTGTCACAGATTTGGGTTTGTTGTCACTGTCAAGCTAGAGCATCACGGATTTTTCCTCCTCCTCCTCCTCCGCCGCCGCCGCATCCAGCGGATAAATCACTGTCTGGTGAAGAAAAAGACAACGCCAAAAATGATCTTCTCCAAAAATACTTCAACGGCAGAGCCTTCGATCGTCACCGCCATGATGAAGGATTTGAAGACAGTAAACGGAAAATACCCAGTTGTCCAGATCCTCTTCATAATTAGTAGGATTAATTATTCAATTTTACACTCTTTCCCGTCCAAAATACCCC

mRNA sequence

TTTGCTCTTATATCTCTAACCTAAGCCTCAAATCCATTTCCATACACAATACAATTTCCTCTCTATTTCTTTTTTCTTTTTTTCTTTTTTTTATACCAATCTCAATTTACTATGACATTCATACACGTCCACCCAGATAGAGGACGGATTTGAGTGTTTTTGAAATATTTCAAGTTTCTTTTGTTTTTTTTTTTTTTTTTCTTTGTGGGTTTTTCTTCCGGCCGCCGGCAAAGCCACCATGTTTAACAGAAGAATCACCACTTCCTCCTCCTCTTCCTCCACCTCTGCTTTTGCCATACTAATTTTGATCCTGTGGGTGTCACAGATTTGGGTTTGTTGTCACTGTCAAGCTAGAGCATCACGGATTTTTCCTCCTCCTCCTCCTCCGCCGCCGCCGCATCCAGCGGATAAATCACTGTCTGGTGAAGAAAAAGACAACGCCAAAAATGATCTTCTCCAAAAATACTTCAACGGCAGAGCCTTCGATCGTCACCGCCATGATGAAGGATTTGAAGACAGTAAACGGAAAATACCCAGTTGTCCAGATCCTCTTCATAATTAGTAGGATTAATTATTCAATTTTACACTCTTTCCCGTCCAAAATACCCC

Coding sequence (CDS)

ATGTTTAACAGAAGAATCACCACTTCCTCCTCCTCTTCCTCCACCTCTGCTTTTGCCATACTAATTTTGATCCTGTGGGTGTCACAGATTTGGGTTTGTTGTCACTGTCAAGCTAGAGCATCACGGATTTTTCCTCCTCCTCCTCCTCCGCCGCCGCCGCATCCAGCGGATAAATCACTGTCTGGTGAAGAAAAAGACAACGCCAAAAATGATCTTCTCCAAAAATACTTCAACGGCAGAGCCTTCGATCGTCACCGCCATGATGAAGGATTTGAAGACAGTAAACGGAAAATACCCAGTTGTCCAGATCCTCTTCATAATTAG

Protein sequence

MFNRRITTSSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSLSGEEKDNAKNDLLQKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN*

Homology

[Close]

BLAST of CSPI05G25300 vs. ExPASy Swiss-Prot
Match: Q9LUA1 (CLAVATA3/ESR (CLE)-related protein 27 OS=Arabidopsis thaliana OX=3702 GN=CLE27 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.6e-04
Identity = 33/98 (33.67%), Postives = 51/98 (52.04%), Query Frame = 0


Query: 12  SSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSLSGEEKDNAKND 71
           SS T+   ++IL+ ++  ++ C + +  A RIFP  P            SG+ ++    D
Sbjct: 9   SSLTTTLLMVILLSYMLHLF-CVYSRVGAIRIFPETP-----------ASGKRQE---ED 68

Query: 72  LLQKYFNGRAFDRHRH--DEGFEDSKRKIPSCPDPLHN 108
           L++KYF    F        +G  +SKR +PSCPDPLHN
Sbjct: 69  LMKKYFGAGKFPPVDSFVGKGISESKRIVPSCPDPLHN 91

[Close]

BLAST of CSPI05G25300 vs. ExPASy TrEMBL
Match: A0A0A0KR66 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G609690 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 3.5e-55
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MFNRRITTSSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSL 60
           MFNRRITTSSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSL
Sbjct: 1   MFNRRITTSSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSL 60

Query: 61  SGEEKDNAKNDLLQKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN 108
           SGEEKDNAKNDLLQKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN
Sbjct: 61  SGEEKDNAKNDLLQKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN 107

[Close]

BLAST of CSPI05G25300 vs. ExPASy TrEMBL
Match: A0A6J1DAV9 (uncharacterized protein LOC111018633 OS=Momordica charantia OX=3673 GN=LOC111018633 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.8e-22
Identity = 65/105 (61.90%), Postives = 75/105 (71.43%), Query Frame = 0


Query: 1   MFNRRITTSSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSL 60
           M  RRI  ++ SSS S+FAILILILWVSQIWVCCHCQARASRI PPP            L
Sbjct: 1   MCTRRI--AAVSSSASSFAILILILWVSQIWVCCHCQARASRILPPP------------L 60

Query: 61  SGEEKDNA--KNDLLQKYFNGRAFDRHRHDEGFEDSKRKIPSCPD 104
           +G+ K +A  KN+L+QKY  GRA DRH   EGFEDSKR++PSC D
Sbjct: 61  TGDAKHDASGKNELVQKYLRGRASDRH---EGFEDSKRRVPSCSD 88

[Close]

BLAST of CSPI05G25300 vs. ExPASy TrEMBL
Match: A0A061E6F8 (Clavata3/esr-related 43, putative OS=Theobroma cacao OX=3641 GN=TCM_009879 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.6e-12
Identity = 44/98 (44.90%), Postives = 59/98 (60.20%), Query Frame = 0


Query: 10  SSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSLSGEEKDNAK 69
           SS     +  +++LI++  QIWVCC C+A A RI P                G + +  K
Sbjct: 7   SSRKLLYSSVVVLLIIFFLQIWVCCDCRAGAIRILPGNGMRKMTES-----QGMKDNKGK 66

Query: 70  NDLLQKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN 108
            DL QKYFNGR+F  ++ D GFE+SKR++PSCPDPLHN
Sbjct: 67  GDLFQKYFNGRSFSFNKTDRGFEESKRRVPSCPDPLHN 99

[Close]

BLAST of CSPI05G25300 vs. ExPASy TrEMBL
Match: A0A2C9UKL3 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G102600 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.1e-12
Identity = 39/94 (41.49%), Postives = 62/94 (65.96%), Query Frame = 0


Query: 14  STSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSLSGEEKDNAKNDLL 73
           S+S   +++ +++V QIWVC  C+A A RIF  P     P+   +++S  +  ++K DL 
Sbjct: 13  SSSLLVLVVFLIFVLQIWVCSDCKAGAIRIF--PDNGMAPNLKQRNISTTDNKDSKEDLF 72

Query: 74  QKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN 108
            K+FNGR +  +   +GFE++KR++PSCPDPLHN
Sbjct: 73  HKFFNGRQYSFNTTKKGFEENKRRVPSCPDPLHN 104

[Close]

BLAST of CSPI05G25300 vs. ExPASy TrEMBL
Match: A0A438EC69 (CLAVATA3/ESR (CLE)-related protein 27 OS=Vitis vinifera OX=29760 GN=CLE27_1 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.8e-12
Identity = 42/95 (44.21%), Postives = 58/95 (61.05%), Query Frame = 0


Query: 20  ILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSLSGEEKD-------NAKNDL 79
           +++LI+ +  IW+CC CQA A RIFP             +  GEEK         +  DL
Sbjct: 6   VVLLIISLLHIWLCCDCQAGAMRIFP------------GNGVGEEKGRHQMKARKSNEDL 65

Query: 80  LQKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN 108
            +K+FNGRAF  +R  +GF++SKR++PSCPDPLHN
Sbjct: 66  FRKFFNGRAFAFNRTAKGFDESKRRVPSCPDPLHN 88

[Close]

BLAST of CSPI05G25300 vs. NCBI nr
Match: KGN52083.1 (hypothetical protein Csa_008231 [Cucumis sativus])

HSP 1 Score: 223.8 bits (569), Expect = 7.2e-55
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MFNRRITTSSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSL 60
           MFNRRITTSSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSL
Sbjct: 1   MFNRRITTSSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSL 60

Query: 61  SGEEKDNAKNDLLQKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN 108
           SGEEKDNAKNDLLQKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN
Sbjct: 61  SGEEKDNAKNDLLQKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN 107

[Close]

BLAST of CSPI05G25300 vs. NCBI nr
Match: KAG7032076.1 (CLAVATA3/ESR (CLE)-related protein 43, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 150.6 bits (379), Expect = 7.8e-33
Identity = 78/111 (70.27%), Postives = 88/111 (79.28%), Query Frame = 0


Query: 1   MFNRRITTSSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSL 60
           M  RRI TSSSSS    FA+LI ILWVSQIWVC HCQARASRIF    PPPPPH AD +L
Sbjct: 1   MCTRRIATSSSSS----FALLIFILWVSQIWVCSHCQARASRIF----PPPPPHTADTTL 60

Query: 61  SGEEK----DNAKNDLLQKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN 108
           +G++K     NA+ +LL+KYF G+AFDRHR DEGFEDSKR+IPSCPDPLHN
Sbjct: 61  TGDQKYNANANAERELLRKYFKGKAFDRHRRDEGFEDSKRRIPSCPDPLHN 103

[Close]

BLAST of CSPI05G25300 vs. NCBI nr
Match: KAG6601288.1 (CLAVATA3/ESR (CLE)-related protein 43, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 150.6 bits (379), Expect = 7.8e-33
Identity = 78/111 (70.27%), Postives = 88/111 (79.28%), Query Frame = 0


Query: 1   MFNRRITTSSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSL 60
           M  RRI TSSSSS    FA+LI ILWVSQIWVC HCQARASRIF    PPPPPH AD +L
Sbjct: 12  MCTRRIATSSSSS----FALLIFILWVSQIWVCSHCQARASRIF----PPPPPHTADTTL 71

Query: 61  SGEEK----DNAKNDLLQKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN 108
           +G++K     NA+ +LL+KYF G+AFDRHR DEGFEDSKR+IPSCPDPLHN
Sbjct: 72  TGDQKYNANANAERELLRKYFKGKAFDRHRRDEGFEDSKRRIPSCPDPLHN 114

[Close]

BLAST of CSPI05G25300 vs. NCBI nr
Match: KAG6573960.1 (CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 131.0 bits (328), Expect = 6.4e-27
Identity = 76/110 (69.09%), Postives = 80/110 (72.73%), Query Frame = 0


Query: 1   MFNRRITTSSSSSSTSAFAILILILWVSQIWV-CCHCQARASRIF-PPPPPPPPPHPADK 60
           M  RRI  SSS      FAILILILWVSQIWV CC  QARASRIF PPPPPPPPPH  DK
Sbjct: 1   MCTRRIAASSS------FAILILILWVSQIWVFCCFSQARASRIFPPPPPPPPPPHTTDK 60

Query: 61  SLSGEEKDNAKNDLLQKYFNGRAF-DRHRHDEGFEDSKRKIPSCPDPLHN 108
           +    +  N + +LLQKYF  RAF D HRH EGF DSKRKIPSCPDPLHN
Sbjct: 61  T----DHANRRYELLQKYFKDRAFLDPHRHHEGFVDSKRKIPSCPDPLHN 100

[Close]

BLAST of CSPI05G25300 vs. NCBI nr
Match: XP_022150497.1 (uncharacterized protein LOC111018633 [Momordica charantia])

HSP 1 Score: 115.2 bits (287), Expect = 3.6e-22
Identity = 65/105 (61.90%), Postives = 75/105 (71.43%), Query Frame = 0


Query: 1   MFNRRITTSSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSL 60
           M  RRI  ++ SSS S+FAILILILWVSQIWVCCHCQARASRI PPP            L
Sbjct: 1   MCTRRI--AAVSSSASSFAILILILWVSQIWVCCHCQARASRILPPP------------L 60

Query: 61  SGEEKDNA--KNDLLQKYFNGRAFDRHRHDEGFEDSKRKIPSCPD 104
           +G+ K +A  KN+L+QKY  GRA DRH   EGFEDSKR++PSC D
Sbjct: 61  TGDAKHDASGKNELVQKYLRGRASDRH---EGFEDSKRRVPSCSD 88

[Close]

BLAST of CSPI05G25300 vs. TAIR 10
Match: AT3G25905.1 (CLAVATA3/ESR-RELATED 27 )

HSP 1 Score: 47.0 bits (110), Expect = 1.1e-05
Identity = 33/98 (33.67%), Postives = 51/98 (52.04%), Query Frame = 0


Query: 12  SSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSLSGEEKDNAKND 71
           SS T+   ++IL+ ++  ++ C + +  A RIFP  P            SG+ ++    D
Sbjct: 9   SSLTTTLLMVILLSYMLHLF-CVYSRVGAIRIFPETP-----------ASGKRQE---ED 68

Query: 72  LLQKYFNGRAFDRHRH--DEGFEDSKRKIPSCPDPLHN 108
           L++KYF    F        +G  +SKR +PSCPDPLHN
Sbjct: 69  LMKKYFGAGKFPPVDSFVGKGISESKRIVPSCPDPLHN 91

[Close]

BLAST of CSPI05G25300 vs. TAIR 10
Match: AT1G25425.1 (CLAVATA3/ESR-RELATED 43 )

HSP 1 Score: 42.4 bits (98), Expect = 2.8e-04
Identity = 32/94 (34.04%), Postives = 48/94 (51.06%), Query Frame = 0


Query: 18  FAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSLSGEEKDNAKND----LL 77
           F++ +L++ + QIW+      R  R    P         D++     K+  KN+    L 
Sbjct: 10  FSVALLLISLFQIWL-----FREGR--QVPELSDDQLGKDRNTLMTSKNKNKNEDVQRLF 69

Query: 78  QKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN 108
           Q+YF GR+F  +  +  FEDS R+IPS PD LHN
Sbjct: 70  QRYFKGRSFGLNNTNSRFEDSNRRIPSSPDRLHN 96

The following BLAST results are available for this feature:

BLAST of CSPI05G25300 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LUA1	1.6e-04	33.67	CLAVATA3/ESR (CLE)-related protein 27 OS=Arabidopsis thaliana OX=3702 GN=CLE27 P...	[more]

BLAST of CSPI05G25300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KR66	3.5e-55	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G609690 PE=4 SV=1	[more]
A0A6J1DAV9	1.8e-22	61.90	uncharacterized protein LOC111018633 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A061E6F8	1.6e-12	44.90	Clavata3/esr-related 43, putative OS=Theobroma cacao OX=3641 GN=TCM_009879 PE=4 ...	[more]
A0A2C9UKL3	2.1e-12	41.49	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G102600 PE=4 SV=...	[more]
A0A438EC69	2.8e-12	44.21	CLAVATA3/ESR (CLE)-related protein 27 OS=Vitis vinifera OX=29760 GN=CLE27_1 PE=4...	[more]

BLAST of CSPI05G25300 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN52083.1	7.2e-55	100.00	hypothetical protein Csa_008231 [Cucumis sativus]	[more]
KAG7032076.1	7.8e-33	70.27	CLAVATA3/ESR (CLE)-related protein 43, partial [Cucurbita argyrosperma subsp. ar...	[more]
KAG6601288.1	7.8e-33	70.27	CLAVATA3/ESR (CLE)-related protein 43, partial [Cucurbita argyrosperma subsp. so...	[more]
KAG6573960.1	6.4e-27	69.09	CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_022150497.1	3.6e-22	61.90	uncharacterized protein LOC111018633 [Momordica charantia]	[more]

BLAST of CSPI05G25300 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G25905.1	1.1e-05	33.67	CLAVATA3/ESR-RELATED 27	[more]
AT1G25425.1	2.8e-04	34.04	CLAVATA3/ESR-RELATED 43	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..65
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..57
IPR040274	CLAVATA3/ESR (CLE)-related protein 27/43	PANTHER	PTHR37184	CLAVATA3/ESR (CLE)-RELATED PROTEIN 27	coord: 5..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G25300.1	CSPI05G25300.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane