CSPI05G21260 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI05G21260
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionLipase maturation factor 2
LocationChr5: 22061005 .. 22062101 (+)
RNA-Seq ExpressionCSPI05G21260
SyntenyCSPI05G21260
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACTTGTTAATTTTCAGAGTGAAATCCATGAGTATCATAATTGTAAAGATAAATTTCCACTCCACTTGAAATTGAAATTGGGGTCCAGAGCTATATTGCCTTATCCACAACCGACCAATAGATTTCAATAACCATTCTCTAGAGAACCCCTATGGGATATCCTCTTTGAGAGTCTGTTGTTTACACATAAGAAATGTATTGCACAAAAGAAGAGAAAAAAAAGGTCTCTTCTATTCTAATATCATAAACCTCTCATATGGTGATGTGAGATTGAGAAACAATGGCACATTCACTATCTTCTGTATCGGCTACAGCCAATGTCACAGCCACTCTCTCGCGCTCTATCCGATTCAGCAACACACAATGTTCTTATCAAAGGCTTCCAAATCCACAAGCTTGCAGTAACGCTTGCAATGAAACTCAACATACCAATCTCATCTCACGCAGGTACAAGTCTAATGCAAGTGAATATGTACAACATTATATTATCAACGATAGATTCTGAGTTGGTTTTAAATTTCTTAATATCTACAAATTCTTTTGCATAATTGCTATTAGATGCAATTGACCCTAATAATAAGTTACATGCATTATAAATTTTTTGTGTTCAAATTCCTCTAAGATCATTAGCCACACATCCAATGTGGTGTGGCTCAAAATTGCAGAAACACTGCCTTGATCCTGACAGGGGTAATGCTGGGTGTGAATGTGGTTGACCGGAGGGCGGAGGCAGCGGCAAGAAGACCGCCACCACCTCCACCGCAAGAGAAGAAGGACCCCAATCTGAGTGGGGTTCAGGCAAAAGTGCTAGCTAGTAAAAAGAGAAAGGAAGCCCTTAAAGAAGCTACAGCTAAGCTAAGAGCGAAAGGGAAACCTGTTGACCAGCCACCACCTGAATAATTTATGTGAATCCCAAACTTTTTGATGTTTTCGCATTTCTCCCGTCGGATATTATGTTAATCCCCACCTGAATAAAGAGTGCATATTTATATTAACAACTCTAATATTCGTTTGTGAAGTAAGAAATATGATTAAGGCCATGTGGCCATTCTATTGATTGTACTCTATTCTATGAGTTAGCTATGAGTACCAAGAGCC

mRNA sequence

ACTTGTTAATTTTCAGAGTGAAATCCATGAGTATCATAATTGTAAAGATAAATTTCCACTCCACTTGAAATTGAAATTGGGGTCCAGAGCTATATTGCCTTATCCACAACCGACCAATAGATTTCAATAACCATTCTCTAGAGAACCCCTATGGGATATCCTCTTTGAGAGTCTGTTGTTTACACATAAGAAATGTATTGCACAAAAGAAGAGAAAAAAAAGGTCTCTTCTATTCTAATATCATAAACCTCTCATATGGTGATGTGAGATTGAGAAACAATGGCACATTCACTATCTTCTGTATCGGCTACAGCCAATGTCACAGCCACTCTCTCGCGCTCTATCCGATTCAGCAACACACAATGTTCTTATCAAAGGCTTCCAAATCCACAAGCTTGCAGTAACGCTTGCAATGAAACTCAACATACCAATCTCATCTCACGCAGAAACACTGCCTTGATCCTGACAGGGGTAATGCTGGGTGTGAATGTGGTTGACCGGAGGGCGGAGGCAGCGGCAAGAAGACCGCCACCACCTCCACCGCAAGAGAAGAAGGACCCCAATCTGAGTGGGGTTCAGGCAAAAGTGCTAGCTAGTAAAAAGAGAAAGGAAGCCCTTAAAGAAGCTACAGCTAAGCTAAGAGCGAAAGGGAAACCTGTTGACCAGCCACCACCTGAATAATTTATGTGAATCCCAAACTTTTTGATGTTTTCGCATTTCTCCCGTCGGATATTATGTTAATCCCCACCTGAATAAAGAGTGCATATTTATATTAACAACTCTAATATTCGTTTGTGAAGTAAGAAATATGATTAAGGCCATGTGGCCATTCTATTGATTGTACTCTATTCTATGAGTTAGCTATGAGTACCAAGAGCC

Coding sequence (CDS)

ATGGCACATTCACTATCTTCTGTATCGGCTACAGCCAATGTCACAGCCACTCTCTCGCGCTCTATCCGATTCAGCAACACACAATGTTCTTATCAAAGGCTTCCAAATCCACAAGCTTGCAGTAACGCTTGCAATGAAACTCAACATACCAATCTCATCTCACGCAGAAACACTGCCTTGATCCTGACAGGGGTAATGCTGGGTGTGAATGTGGTTGACCGGAGGGCGGAGGCAGCGGCAAGAAGACCGCCACCACCTCCACCGCAAGAGAAGAAGGACCCCAATCTGAGTGGGGTTCAGGCAAAAGTGCTAGCTAGTAAAAAGAGAAAGGAAGCCCTTAAAGAAGCTACAGCTAAGCTAAGAGCGAAAGGGAAACCTGTTGACCAGCCACCACCTGAATAA

Protein sequence

MAHSLSSVSATANVTATLSRSIRFSNTQCSYQRLPNPQACSNACNETQHTNLISRRNTALILTGVMLGVNVVDRRAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKEATAKLRAKGKPVDQPPPE*
Homology
BLAST of CSPI05G21260 vs. ExPASy TrEMBL
Match: A0A0A0KPU5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G588750 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 9.6e-63
Identity = 132/133 (99.25%), Postives = 133/133 (100.00%), Query Frame = 0

Query: 1   MAHSLSSVSATANVTATLSRSIRFSNTQCSYQRLPNPQACSNACNETQHTNLISRRNTAL 60
           MAHSLSS+SATANVTATLSRSIRFSNTQCSYQRLPNPQACSNACNETQHTNLISRRNTAL
Sbjct: 1   MAHSLSSISATANVTATLSRSIRFSNTQCSYQRLPNPQACSNACNETQHTNLISRRNTAL 60

Query: 61  ILTGVMLGVNVVDRRAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKEATAKL 120
           ILTGVMLGVNVVDRRAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKEATAKL
Sbjct: 61  ILTGVMLGVNVVDRRAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKEATAKL 120

Query: 121 RAKGKPVDQPPPE 134
           RAKGKPVDQPPPE
Sbjct: 121 RAKGKPVDQPPPE 133

BLAST of CSPI05G21260 vs. ExPASy TrEMBL
Match: A0A5A7SY24 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G001700 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 3.3e-55
Identity = 121/133 (90.98%), Postives = 128/133 (96.24%), Query Frame = 0

Query: 1   MAHSLSSVSATANVTATLSRSIRFSNTQCSYQRLPNPQACSNACNETQHTNLISRRNTAL 60
           MAHSLSS+SATANVTAT+SRSIRFSNTQCSY RLPNPQA SNA N+++ +NLISRRNTAL
Sbjct: 1   MAHSLSSISATANVTATISRSIRFSNTQCSYHRLPNPQARSNARNQSEPSNLISRRNTAL 60

Query: 61  ILTGVMLGVNVVDRRAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKEATAKL 120
           ILTGVMLGVNVVDR AEAAARRPPPPPP+EKKDPNLSGVQAKVLASKKRKEALKEATAKL
Sbjct: 61  ILTGVMLGVNVVDRSAEAAARRPPPPPPKEKKDPNLSGVQAKVLASKKRKEALKEATAKL 120

Query: 121 RAKGKPVDQPPPE 134
           RAKGKPVDQPPPE
Sbjct: 121 RAKGKPVDQPPPE 133

BLAST of CSPI05G21260 vs. ExPASy TrEMBL
Match: A0A1S3BE14 (uncharacterized protein LOC103488868 OS=Cucumis melo OX=3656 GN=LOC103488868 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 3.3e-55
Identity = 121/133 (90.98%), Postives = 128/133 (96.24%), Query Frame = 0

Query: 1   MAHSLSSVSATANVTATLSRSIRFSNTQCSYQRLPNPQACSNACNETQHTNLISRRNTAL 60
           MAHSLSS+SATANVTAT+SRSIRFSNTQCSY RLPNPQA SNA N+++ +NLISRRNTAL
Sbjct: 1   MAHSLSSISATANVTATISRSIRFSNTQCSYHRLPNPQARSNARNQSEPSNLISRRNTAL 60

Query: 61  ILTGVMLGVNVVDRRAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKEATAKL 120
           ILTGVMLGVNVVDR AEAAARRPPPPPP+EKKDPNLSGVQAKVLASKKRKEALKEATAKL
Sbjct: 61  ILTGVMLGVNVVDRSAEAAARRPPPPPPKEKKDPNLSGVQAKVLASKKRKEALKEATAKL 120

Query: 121 RAKGKPVDQPPPE 134
           RAKGKPVDQPPPE
Sbjct: 121 RAKGKPVDQPPPE 133

BLAST of CSPI05G21260 vs. ExPASy TrEMBL
Match: A0A6J1K8T5 (uncharacterized protein LOC111493312 OS=Cucurbita maxima OX=3661 GN=LOC111493312 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.6e-39
Identity = 102/135 (75.56%), Postives = 112/135 (82.96%), Query Frame = 0

Query: 1   MAHSLSSVSATANVTATLSRSIRFSNTQCS-YQRLPNPQACSNACNETQHTNLISRRNTA 60
           MAHSLSS+SATAN TA      RFSN +CS   RLPN QA S+ACN+T  T+LISRRN A
Sbjct: 1   MAHSLSSISATANATAA-----RFSNPRCSTCLRLPNLQARSHACNQTARTHLISRRNAA 60

Query: 61  LILTGVMLGV-NVVDRRAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKEATA 120
           LILTG MLG+ NVV + AEAAARRPPPPPPQEKKDPNLSGVQAKVLAS+KRKEA+KEA A
Sbjct: 61  LILTGAMLGLNNVVVQSAEAAARRPPPPPPQEKKDPNLSGVQAKVLASRKRKEAMKEAMA 120

Query: 121 KLRAKGKPVDQPPPE 134
           KLR +GK VDQPPPE
Sbjct: 121 KLRERGKAVDQPPPE 130

BLAST of CSPI05G21260 vs. ExPASy TrEMBL
Match: A0A6J1GYZ4 (uncharacterized protein LOC111458160 OS=Cucurbita moschata OX=3662 GN=LOC111458160 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.8e-38
Identity = 100/135 (74.07%), Postives = 111/135 (82.22%), Query Frame = 0

Query: 1   MAHSLSSVSATANVTATLSRSIRFSNTQC-SYQRLPNPQACSNACNETQHTNLISRRNTA 60
           MAHSLSS+SATAN TA      RFSN +C S  RLPN QA S ACN+T  ++LISRRN A
Sbjct: 1   MAHSLSSISATANATAA-----RFSNPRCSSCLRLPNLQARSQACNQTARSHLISRRNAA 60

Query: 61  LILTGVMLGV-NVVDRRAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKEATA 120
           LILTG +LG+ NVV + AEAAARRPPPPPPQEKKDPNLSGVQAKVLAS+KRKEA+KEA A
Sbjct: 61  LILTGAILGLNNVVVQSAEAAARRPPPPPPQEKKDPNLSGVQAKVLASRKRKEAMKEAMA 120

Query: 121 KLRAKGKPVDQPPPE 134
           KLR +GK VDQPPPE
Sbjct: 121 KLRERGKAVDQPPPE 130

BLAST of CSPI05G21260 vs. NCBI nr
Match: XP_004135338.1 (uncharacterized protein LOC101217329 [Cucumis sativus] >KGN51655.1 hypothetical protein Csa_009138 [Cucumis sativus])

HSP 1 Score: 249.2 bits (635), Expect = 2.0e-62
Identity = 132/133 (99.25%), Postives = 133/133 (100.00%), Query Frame = 0

Query: 1   MAHSLSSVSATANVTATLSRSIRFSNTQCSYQRLPNPQACSNACNETQHTNLISRRNTAL 60
           MAHSLSS+SATANVTATLSRSIRFSNTQCSYQRLPNPQACSNACNETQHTNLISRRNTAL
Sbjct: 1   MAHSLSSISATANVTATLSRSIRFSNTQCSYQRLPNPQACSNACNETQHTNLISRRNTAL 60

Query: 61  ILTGVMLGVNVVDRRAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKEATAKL 120
           ILTGVMLGVNVVDRRAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKEATAKL
Sbjct: 61  ILTGVMLGVNVVDRRAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKEATAKL 120

Query: 121 RAKGKPVDQPPPE 134
           RAKGKPVDQPPPE
Sbjct: 121 RAKGKPVDQPPPE 133

BLAST of CSPI05G21260 vs. NCBI nr
Match: XP_008446014.1 (PREDICTED: uncharacterized protein LOC103488868 [Cucumis melo] >KAA0034177.1 uncharacterized protein E6C27_scaffold65G001700 [Cucumis melo var. makuwa])

HSP 1 Score: 224.2 bits (570), Expect = 6.9e-55
Identity = 121/133 (90.98%), Postives = 128/133 (96.24%), Query Frame = 0

Query: 1   MAHSLSSVSATANVTATLSRSIRFSNTQCSYQRLPNPQACSNACNETQHTNLISRRNTAL 60
           MAHSLSS+SATANVTAT+SRSIRFSNTQCSY RLPNPQA SNA N+++ +NLISRRNTAL
Sbjct: 1   MAHSLSSISATANVTATISRSIRFSNTQCSYHRLPNPQARSNARNQSEPSNLISRRNTAL 60

Query: 61  ILTGVMLGVNVVDRRAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKEATAKL 120
           ILTGVMLGVNVVDR AEAAARRPPPPPP+EKKDPNLSGVQAKVLASKKRKEALKEATAKL
Sbjct: 61  ILTGVMLGVNVVDRSAEAAARRPPPPPPKEKKDPNLSGVQAKVLASKKRKEALKEATAKL 120

Query: 121 RAKGKPVDQPPPE 134
           RAKGKPVDQPPPE
Sbjct: 121 RAKGKPVDQPPPE 133

BLAST of CSPI05G21260 vs. NCBI nr
Match: XP_038877882.1 (uncharacterized protein LOC120070100 [Benincasa hispida])

HSP 1 Score: 202.2 bits (513), Expect = 2.8e-48
Identity = 112/133 (84.21%), Postives = 117/133 (87.97%), Query Frame = 0

Query: 1   MAHSLSSVSATANVTATLSRSIRFSNTQCSYQRLPNPQACSNACNETQHTNLISRRNTAL 60
           MAHSLSS+SATANVTA LSRS R S  QCS QRLPN Q  SNACN T  ++LISRRN  L
Sbjct: 1   MAHSLSSISATANVTAALSRSTRISGMQCSNQRLPNLQTRSNACNRTPCSHLISRRNAFL 60

Query: 61  ILTGVMLGVNVVDRRAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKEATAKL 120
           ILTG +LG+NVVDR AEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKEATAKL
Sbjct: 61  ILTGAILGLNVVDRSAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKEATAKL 120

Query: 121 RAKGKPVDQPPPE 134
           RAKGKPVDQPPPE
Sbjct: 121 RAKGKPVDQPPPE 133

BLAST of CSPI05G21260 vs. NCBI nr
Match: XP_022998742.1 (uncharacterized protein LOC111493312 [Cucurbita maxima])

HSP 1 Score: 171.4 bits (433), Expect = 5.3e-39
Identity = 102/135 (75.56%), Postives = 112/135 (82.96%), Query Frame = 0

Query: 1   MAHSLSSVSATANVTATLSRSIRFSNTQCS-YQRLPNPQACSNACNETQHTNLISRRNTA 60
           MAHSLSS+SATAN TA      RFSN +CS   RLPN QA S+ACN+T  T+LISRRN A
Sbjct: 1   MAHSLSSISATANATAA-----RFSNPRCSTCLRLPNLQARSHACNQTARTHLISRRNAA 60

Query: 61  LILTGVMLGV-NVVDRRAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKEATA 120
           LILTG MLG+ NVV + AEAAARRPPPPPPQEKKDPNLSGVQAKVLAS+KRKEA+KEA A
Sbjct: 61  LILTGAMLGLNNVVVQSAEAAARRPPPPPPQEKKDPNLSGVQAKVLASRKRKEAMKEAMA 120

Query: 121 KLRAKGKPVDQPPPE 134
           KLR +GK VDQPPPE
Sbjct: 121 KLRERGKAVDQPPPE 130

BLAST of CSPI05G21260 vs. NCBI nr
Match: XP_022956419.1 (uncharacterized protein LOC111458160 [Cucurbita moschata] >KAG6601612.1 hypothetical protein SDJN03_06845, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 167.9 bits (424), Expect = 5.8e-38
Identity = 100/135 (74.07%), Postives = 111/135 (82.22%), Query Frame = 0

Query: 1   MAHSLSSVSATANVTATLSRSIRFSNTQC-SYQRLPNPQACSNACNETQHTNLISRRNTA 60
           MAHSLSS+SATAN TA      RFSN +C S  RLPN QA S ACN+T  ++LISRRN A
Sbjct: 1   MAHSLSSISATANATAA-----RFSNPRCSSCLRLPNLQARSQACNQTARSHLISRRNAA 60

Query: 61  LILTGVMLGV-NVVDRRAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKEATA 120
           LILTG +LG+ NVV + AEAAARRPPPPPPQEKKDPNLSGVQAKVLAS+KRKEA+KEA A
Sbjct: 61  LILTGAILGLNNVVVQSAEAAARRPPPPPPQEKKDPNLSGVQAKVLASRKRKEAMKEAMA 120

Query: 121 KLRAKGKPVDQPPPE 134
           KLR +GK VDQPPPE
Sbjct: 121 KLRERGKAVDQPPPE 130

BLAST of CSPI05G21260 vs. TAIR 10
Match: AT1G21500.1 (unknown protein; Has 29 Blast hits to 29 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 78.6 bits (192), Expect = 4.3e-15
Identity = 58/134 (43.28%), Postives = 75/134 (55.97%), Query Frame = 0

Query: 1   MAHSLSSVSATANVTATLSRSIRFSNTQCSYQRLPNPQACSNACNETQHTNLISRRNTAL 60
           +AHSL  +S  A+     S               P+P++   A         I+RR   +
Sbjct: 2   VAHSLVPLSPAAHAARLSS---------------PSPRSLPQAPPVVLAVPPINRRTILV 61

Query: 61  ILTGVMLGVNVVDRRAE--AAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKEATA 120
            L G +   N +  + E  AAARRPPPPPP+EKKDP ++GVQAKVLASKKRKE +K + A
Sbjct: 62  GLGGALWSWNALAAKEEAMAAARRPPPPPPKEKKDPTVTGVQAKVLASKKRKEEMKASIA 120

Query: 121 KLRAKGKPVDQPPP 133
           KLR KGKPV +  P
Sbjct: 122 KLREKGKPVVEAKP 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KPU59.6e-6399.25Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G588750 PE=4 SV=1[more]
A0A5A7SY243.3e-5590.98Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A1S3BE143.3e-5590.98uncharacterized protein LOC103488868 OS=Cucumis melo OX=3656 GN=LOC103488868 PE=... [more]
A0A6J1K8T52.6e-3975.56uncharacterized protein LOC111493312 OS=Cucurbita maxima OX=3661 GN=LOC111493312... [more]
A0A6J1GYZ42.8e-3874.07uncharacterized protein LOC111458160 OS=Cucurbita moschata OX=3662 GN=LOC1114581... [more]
Match NameE-valueIdentityDescription
XP_004135338.12.0e-6299.25uncharacterized protein LOC101217329 [Cucumis sativus] >KGN51655.1 hypothetical ... [more]
XP_008446014.16.9e-5590.98PREDICTED: uncharacterized protein LOC103488868 [Cucumis melo] >KAA0034177.1 unc... [more]
XP_038877882.12.8e-4884.21uncharacterized protein LOC120070100 [Benincasa hispida][more]
XP_022998742.15.3e-3975.56uncharacterized protein LOC111493312 [Cucurbita maxima][more]
XP_022956419.15.8e-3874.07uncharacterized protein LOC111458160 [Cucurbita moschata] >KAG6601612.1 hypothet... [more]
Match NameE-valueIdentityDescription
AT1G21500.14.3e-1543.28unknown protein; Has 29 Blast hits to 29 proteins in 12 species: Archae - 0; Bac... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 104..122
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..133
NoneNo IPR availablePANTHERPTHR37182F24J8.11 PROTEINcoord: 1..132
NoneNo IPR availablePANTHERPTHR37182:SF2F24J8.11 PROTEINcoord: 1..132

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G21260.1CSPI05G21260.1mRNA