CSPI05G20110 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI05G20110
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Protein IDA-like
Location	Chr5: 21294554 .. 21294983 (-)
RNA-Seq Expression	CSPI05G20110
Synteny	CSPI05G20110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TACAAATCTCATTCCCCCCCTTTTCCCTCATTTTCCCCAAAACACACCACAAAAATCCCCAATTTTCTCTCATCTCTAATGGCCTCCTCCTCCATTTTCTTCATCCTCCTCCTCATTCTTCCCCTTCCCAATTTCACCACCGCACGCCCATTTCCAGCAACCACAATGACGGAGCCCTCGTCTCACAATACCCACCTCACCACCGCTTTCCGCTTCAACCATCAAATCTTCAGCTTCCTTCCCAAAGGCCCCATTCCGCCTTCCGCTCCTTCAAAAAGACACAACTCGCTCATCAACTCGGCCCCGCTCAACTGAGTTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCAACTCGTCCTTAATTTTGGAGCATTTTCCCCCCCAACGCCTGTCATTCTAATCTAAGATCCTAATTGCAATCTACAGGC

mRNA sequence

TACAAATCTCATTCCCCCCCTTTTCCCTCATTTTCCCCAAAACACACCACAAAAATCCCCAATTTTCTCTCATCTCTAATGGCCTCCTCCTCCATTTTCTTCATCCTCCTCCTCATTCTTCCCCTTCCCAATTTCACCACCGCACGCCCATTTCCAGCAACCACAATGACGGAGCCCTCGTCTCACAATACCCACCTCACCACCGCTTTCCGCTTCAACCATCAAATCTTCAGCTTCCTTCCCAAAGGCCCCATTCCGCCTTCCGCTCCTTCAAAAAGACACAACTCGCTCATCAACTCGGCCCCGCTCAACTGAGTTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCAACTCGTCCTTAATTTTGGAGCATTTTCCCCCCCAACGCCTGTCATTCTAATCTAAGATCCTAATTGCAATCTACAGGC

Coding sequence (CDS)

ATGGCCTCCTCCTCCATTTTCTTCATCCTCCTCCTCATTCTTCCCCTTCCCAATTTCACCACCGCACGCCCATTTCCAGCAACCACAATGACGGAGCCCTCGTCTCACAATACCCACCTCACCACCGCTTTCCGCTTCAACCATCAAATCTTCAGCTTCCTTCCCAAAGGCCCCATTCCGCCTTCCGCTCCTTCAAAAAGACACAACTCGCTCATCAACTCGGCCCCGCTCAACTGA

Protein sequence

MASSSIFFILLLILPLPNFTTARPFPATTMTEPSSHNTHLTTAFRFNHQIFSFLPKGPIPPSAPSKRHNSLINSAPLN*

Homology

[Close]

BLAST of CSPI05G20110 vs. ExPASy Swiss-Prot
Match: Q8LAD7 (Protein IDA OS=Arabidopsis thaliana OX=3702 GN=IDA PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.0e-05
Identity = 23/31 (74.19%), Postives = 25/31 (80.65%), Query Frame = 0


Query: 47 NHQIFSFLPKG-PIPPSAPSKRHNSLINSAP 77
          N  IF +LPKG PIPPSAPSKRHNS +NS P
Sbjct: 46 NSHIFGYLPKGVPIPPSAPSKRHNSFVNSLP 76

[Close]

BLAST of CSPI05G20110 vs. ExPASy TrEMBL
Match: A0A0A0KPP8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G577390 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 2.3e-35
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MASSSIFFILLLILPLPNFTTARPFPATTMTEPSSHNTHLTTAFRFNHQIFSFLPKGPIP 60
          MASSSIFFILLLILPLPNFTTARPFPATTMTEPSSHNTHLTTAFRFNHQIFSFLPKGPIP
Sbjct: 1  MASSSIFFILLLILPLPNFTTARPFPATTMTEPSSHNTHLTTAFRFNHQIFSFLPKGPIP 60

Query: 61 PSAPSKRHNSLINSAPLN 79
          PSAPSKRHNSLINSAPLN
Sbjct: 61 PSAPSKRHNSLINSAPLN 78

[Close]

BLAST of CSPI05G20110 vs. ExPASy TrEMBL
Match: A0A5D3CCP4 (Putative Membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G00620 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 9.9e-07
Identity = 39/77 (50.65%), Postives = 51/77 (66.23%), Query Frame = 0


Query: 4   SSIFFILLLILPLPNFTTARPFPATTMTEPS-SHNTHLTTAFRFNHQIFSFLPKG-PIPP 63
           +SI   +LL+L L  F++A   P  TM  P  S++ + TTAFR+  Q F FLPKG PIPP
Sbjct: 27  NSIPIFILLLLLLSGFSSATR-PGGTMEFPDMSNSNYKTTAFRYAGQTFGFLPKGVPIPP 86

Query: 64  SAPSKRHNSLINSAPLN 79
           S PS RHNS+++S P N
Sbjct: 87  SGPSDRHNSVVDSLPPN 102

[Close]

BLAST of CSPI05G20110 vs. ExPASy TrEMBL
Match: A0A5A7SV51 (Putative Membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G005330 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 9.9e-07
Identity = 39/77 (50.65%), Postives = 51/77 (66.23%), Query Frame = 0


Query: 4  SSIFFILLLILPLPNFTTARPFPATTMTEPS-SHNTHLTTAFRFNHQIFSFLPKG-PIPP 63
          +SI   +LL+L L  F++A   P  TM  P  S++ + TTAFR+  Q F FLPKG PIPP
Sbjct: 23 NSIPIFILLLLLLSGFSSATR-PGGTMEFPDMSNSNYKTTAFRYAGQTFGFLPKGVPIPP 82

Query: 64 SAPSKRHNSLINSAPLN 79
          S PS RHNS+++S P N
Sbjct: 83 SGPSDRHNSVVDSLPPN 98

[Close]

BLAST of CSPI05G20110 vs. ExPASy TrEMBL
Match: A0A0A0KR07 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G608230 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 9.9e-07
Identity = 41/80 (51.25%), Postives = 51/80 (63.75%), Query Frame = 0


Query: 3  SSSIFFILLLILPLPNFTTA-RPFPATTMTE--PSSHNTHLTTAFRFNHQIFSFLPKG-P 62
          S  IF +LLL+L L   ++A RP      TE  P   N++  TAFR+  Q FSFLPKG P
Sbjct: 9  SIPIFILLLLLLLLSGLSSATRPGKTMEFTEMNPDMSNSY-KTAFRYGGQTFSFLPKGVP 68

Query: 63 IPPSAPSKRHNSLINSAPLN 79
          IPPS PS RHNS+++S P N
Sbjct: 69 IPPSGPSDRHNSVVDSLPPN 87

[Close]

BLAST of CSPI05G20110 vs. ExPASy TrEMBL
Match: A0A2P6R1Y4 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0436131 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.9e-06
Identity = 27/38 (71.05%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 42  TAFRFNHQIFSFLPKG-PIPPSAPSKRHNSLINSAPLN 79
           TAFRF  +IFSF PKG P+PPS PSKRHNS++NS P N
Sbjct: 64  TAFRFRGEIFSFFPKGSPVPPSGPSKRHNSVVNSTPKN 101

[Close]

BLAST of CSPI05G20110 vs. NCBI nr
Match: KGN51548.1 (hypothetical protein Csa_008377 [Cucumis sativus])

HSP 1 Score: 157.5 bits (397), Expect = 4.6e-35
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MASSSIFFILLLILPLPNFTTARPFPATTMTEPSSHNTHLTTAFRFNHQIFSFLPKGPIP 60
          MASSSIFFILLLILPLPNFTTARPFPATTMTEPSSHNTHLTTAFRFNHQIFSFLPKGPIP
Sbjct: 1  MASSSIFFILLLILPLPNFTTARPFPATTMTEPSSHNTHLTTAFRFNHQIFSFLPKGPIP 60

Query: 61 PSAPSKRHNSLINSAPLN 79
          PSAPSKRHNSLINSAPLN
Sbjct: 61 PSAPSKRHNSLINSAPLN 78

[Close]

BLAST of CSPI05G20110 vs. NCBI nr
Match: KAG6601760.1 (hypothetical protein SDJN03_06993, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 71.6 bits (174), Expect = 3.4e-09
Identity = 46/78 (58.97%), Postives = 57/78 (73.08%), Query Frame = 0


Query: 1  MASSSIFFILLLILPLPNFTTARPFPATTMTEPSSHNTHLT--TAFRFNHQIFSFLPKG- 60
          ++++SI F+LLLIL LP FT+ARP PAT  T    HN   T   A +F  Q FSFLP+G 
Sbjct: 5  LSNTSISFLLLLIL-LPPFTSARPPPATMPT----HNFLPTPNAAIQFQRQFFSFLPRGV 64

Query: 61 PIPPSAPSKRHNSLINSA 76
          PIPPSAPSKRHNS+++SA
Sbjct: 65 PIPPSAPSKRHNSVLHSA 77

[Close]

BLAST of CSPI05G20110 vs. NCBI nr
Match: KAG6579701.1 (hypothetical protein SDJN03_24149, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 70.5 bits (171), Expect = 7.5e-09
Identity = 42/73 (57.53%), Postives = 52/73 (71.23%), Query Frame = 0


Query: 2   ASSSIFFILLLILPLPNFTTARPFPATTMTEPSSHNTHLTTAFRFNHQIFSFLPKG-PIP 61
           AS   FF+L L+L    F++ARP PAT     +S      TAFRF+HQ+FSFLPKG PIP
Sbjct: 54  ASLLFFFLLTLLL---GFSSARPAPAT--MAGTSFFPAPNTAFRFHHQVFSFLPKGTPIP 113

Query: 62  PSAPSKRHNSLIN 74
           PSAPSKRHNS+++
Sbjct: 114 PSAPSKRHNSVVD 121

[Close]

BLAST of CSPI05G20110 vs. NCBI nr
Match: KAA0034518.1 (putative Membrane lipoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 2.0e-06
Identity = 39/77 (50.65%), Postives = 51/77 (66.23%), Query Frame = 0


Query: 4  SSIFFILLLILPLPNFTTARPFPATTMTEPS-SHNTHLTTAFRFNHQIFSFLPKG-PIPP 63
          +SI   +LL+L L  F++A   P  TM  P  S++ + TTAFR+  Q F FLPKG PIPP
Sbjct: 23 NSIPIFILLLLLLSGFSSATR-PGGTMEFPDMSNSNYKTTAFRYAGQTFGFLPKGVPIPP 82

Query: 64 SAPSKRHNSLINSAPLN 79
          S PS RHNS+++S P N
Sbjct: 83 SGPSDRHNSVVDSLPPN 98

[Close]

BLAST of CSPI05G20110 vs. NCBI nr
Match: TYK09072.1 (putative Membrane lipoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 2.0e-06
Identity = 39/77 (50.65%), Postives = 51/77 (66.23%), Query Frame = 0


Query: 4   SSIFFILLLILPLPNFTTARPFPATTMTEPS-SHNTHLTTAFRFNHQIFSFLPKG-PIPP 63
           +SI   +LL+L L  F++A   P  TM  P  S++ + TTAFR+  Q F FLPKG PIPP
Sbjct: 27  NSIPIFILLLLLLSGFSSATR-PGGTMEFPDMSNSNYKTTAFRYAGQTFGFLPKGVPIPP 86

Query: 64  SAPSKRHNSLINSAPLN 79
           S PS RHNS+++S P N
Sbjct: 87  SGPSDRHNSVVDSLPPN 102

[Close]

BLAST of CSPI05G20110 vs. TAIR 10
Match: AT1G68765.1 (Putative membrane lipoprotein )

HSP 1 Score: 50.4 bits (119), Expect = 7.5e-07
Identity = 23/31 (74.19%), Postives = 25/31 (80.65%), Query Frame = 0


Query: 47 NHQIFSFLPKG-PIPPSAPSKRHNSLINSAP 77
          N  IF +LPKG PIPPSAPSKRHNS +NS P
Sbjct: 46 NSHIFGYLPKGVPIPPSAPSKRHNSFVNSLP 76

The following BLAST results are available for this feature:

BLAST of CSPI05G20110 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LAD7	1.0e-05	74.19	Protein IDA OS=Arabidopsis thaliana OX=3702 GN=IDA PE=1 SV=1	[more]

BLAST of CSPI05G20110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPP8	2.3e-35	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G577390 PE=4 SV=1	[more]
A0A5D3CCP4	9.9e-07	50.65	Putative Membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7SV51	9.9e-07	50.65	Putative Membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A0A0KR07	9.9e-07	51.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G608230 PE=4 SV=1	[more]
A0A2P6R1Y4	4.9e-06	71.05	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0436131 PE=4...	[more]

BLAST of CSPI05G20110 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN51548.1	4.6e-35	100.00	hypothetical protein Csa_008377 [Cucumis sativus]	[more]
KAG6601760.1	3.4e-09	58.97	hypothetical protein SDJN03_06993, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6579701.1	7.5e-09	57.53	hypothetical protein SDJN03_24149, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0034518.1	2.0e-06	50.65	putative Membrane lipoprotein [Cucumis melo var. makuwa]	[more]
TYK09072.1	2.0e-06	50.65	putative Membrane lipoprotein [Cucumis melo var. makuwa]	[more]

BLAST of CSPI05G20110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68765.1	7.5e-07	74.19	Putative membrane lipoprotein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..78
None	No IPR available	PANTHER	PTHR33599:SF18	PROTEIN IDA	coord: 29..78
IPR039639	Protein IDA-like	PANTHER	PTHR33599	PROTEIN IDA-LIKE 5	coord: 29..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G20110.1	CSPI05G20110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010227	floral organ abscission
cellular_component	GO:0005615	extracellular space