CSPI05G19680 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI05G19680
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr5: 20907069 .. 20907656 (-)
RNA-Seq Expression	CSPI05G19680
Synteny	CSPI05G19680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAGCGTCGCGAGAACAAGCAGCTGACAGCAACAATAACAATAAAAACAACAACAACAATTACTACGCAGGTGGGAAAGTAGTCGACGAGAGTATGATCGTGCTCCGGAAACGGATTCATGAGATCAAGATGGCGGAGCAGAGGCAAGAACCGCCGGCGGATTGGCTGGATTGGGAGAAACGGTGTTATTCCGATTACGATTCCCATATCTGTGAAGCTTTAGGGTATCTTCAATCTCATTTGATGAATACTCGGCCTAGTGTGGCTTTGGGAATGCTTCTGCTTATTATTATTAGCGTTCCGCTCTCCTCTGCTCTTCTTCTTCACCGATTCCTCCACATCGCCGTCGCTCTTCTCGCCGGTTTCTCTCCAGCGTCTTGATACCGGAACCGGACCACCACAGTTTAGTTACGTGATTGATCCGATACGCCGTCGTTTTTATATTGTAATTTTTTTTATATAAGGACTGTTTGGTCTTTGTACAGCTTACATCCCATTGTTTGTTTCGCCTTCTGTTATTTATTTAAACGGTCAAGGTTTTTTTTGTTTTTTTTTCTTTTCCATATAATACAACTTTTTTTTCCTTTC

mRNA sequence

AGAGCGTCGCGAGAACAAGCAGCTGACAGCAACAATAACAATAAAAACAACAACAACAATTACTACGCAGGTGGGAAAGTAGTCGACGAGAGTATGATCGTGCTCCGGAAACGGATTCATGAGATCAAGATGGCGGAGCAGAGGCAAGAACCGCCGGCGGATTGGCTGGATTGGGAGAAACGGTGTTATTCCGATTACGATTCCCATATCTGTGAAGCTTTAGGGTATCTTCAATCTCATTTGATGAATACTCGGCCTAGTGTGGCTTTGGGAATGCTTCTGCTTATTATTATTAGCGTTCCGCTCTCCTCTGCTCTTCTTCTTCACCGATTCCTCCACATCGCCGTCGCTCTTCTCGCCGGTTTCTCTCCAGCGTCTTGATACCGGAACCGGACCACCACAGTTTAGTTACGTGATTGATCCGATACGCCGTCGTTTTTATATTGTAATTTTTTTTATATAAGGACTGTTTGGTCTTTGTACAGCTTACATCCCATTGTTTGTTTCGCCTTCTGTTATTTATTTAAACGGTCAAGGTTTTTTTTGTTTTTTTTTCTTTTCCATATAATACAACTTTTTTTTCCTTTC

Coding sequence (CDS)

ATGATCGTGCTCCGGAAACGGATTCATGAGATCAAGATGGCGGAGCAGAGGCAAGAACCGCCGGCGGATTGGCTGGATTGGGAGAAACGGTGTTATTCCGATTACGATTCCCATATCTGTGAAGCTTTAGGGTATCTTCAATCTCATTTGATGAATACTCGGCCTAGTGTGGCTTTGGGAATGCTTCTGCTTATTATTATTAGCGTTCCGCTCTCCTCTGCTCTTCTTCTTCACCGATTCCTCCACATCGCCGTCGCTCTTCTCGCCGGTTTCTCTCCAGCGTCTTGA

Protein sequence

MIVLRKRIHEIKMAEQRQEPPADWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPSVALGMLLLIIISVPLSSALLLHRFLHIAVALLAGFSPAS*

Homology

[Close]

BLAST of CSPI05G19680 vs. ExPASy TrEMBL
Match: A0A0A0KPI5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G571480 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 4.7e-43
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 1   MIVLRKRIHEIKMAEQRQEPPADWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPSVALG 60
           MIVLRKRIHEIKMAEQRQEPPADWLDWEKR YSDYDSHICEALGYLQSHLMNTRPSVALG
Sbjct: 65  MIVLRKRIHEIKMAEQRQEPPADWLDWEKRWYSDYDSHICEALGYLQSHLMNTRPSVALG 124

Query: 61  MLLLIIISVPLSSALLLHRFLHIAVALLAGFSPAS 96
           MLLLIIISVPLSSALLLHRFLHIAVALLAGFSPAS
Sbjct: 125 MLLLIIISVPLSSALLLHRFLHIAVALLAGFSPAS 159

[Close]

BLAST of CSPI05G19680 vs. ExPASy TrEMBL
Match: A0A5D3DU22 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold50596G00010 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.8e-42
Identity = 92/95 (96.84%), Postives = 93/95 (97.89%), Query Frame = 0


Query: 1  MIVLRKRIHEIKMAEQRQEPPADWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPSVALG 60
          MIVLRKRIHEIKMAEQRQEPPADWLDWEKR YSDYDSHICEALGYLQSHLMNTRPSVALG
Sbjct: 1  MIVLRKRIHEIKMAEQRQEPPADWLDWEKRYYSDYDSHICEALGYLQSHLMNTRPSVALG 60

Query: 61 MLLLIIISVPLSSALLLHRFLHIAVALLAGFSPAS 96
          MLLLII+SVPLSSALLLHRF HIAVALLAGFSPAS
Sbjct: 61 MLLLIIVSVPLSSALLLHRFFHIAVALLAGFSPAS 95

[Close]

BLAST of CSPI05G19680 vs. ExPASy TrEMBL
Match: A0A5A7TY46 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G00240 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.8e-42
Identity = 92/95 (96.84%), Postives = 93/95 (97.89%), Query Frame = 0


Query: 1   MIVLRKRIHEIKMAEQRQEPPADWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPSVALG 60
           MIVLRKRIHEIKMAEQRQEPPADWLDWEKR YSDYDSHICEALGYLQSHLMNTRPSVALG
Sbjct: 66  MIVLRKRIHEIKMAEQRQEPPADWLDWEKRYYSDYDSHICEALGYLQSHLMNTRPSVALG 125

Query: 61  MLLLIIISVPLSSALLLHRFLHIAVALLAGFSPAS 96
           MLLLII+SVPLSSALLLHRF HIAVALLAGFSPAS
Sbjct: 126 MLLLIIVSVPLSSALLLHRFFHIAVALLAGFSPAS 160

[Close]

BLAST of CSPI05G19680 vs. ExPASy TrEMBL
Match: A0A1S3AV87 (uncharacterized protein LOC103483039 OS=Cucumis melo OX=3656 GN=LOC103483039 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.8e-42
Identity = 92/95 (96.84%), Postives = 93/95 (97.89%), Query Frame = 0


Query: 1   MIVLRKRIHEIKMAEQRQEPPADWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPSVALG 60
           MIVLRKRIHEIKMAEQRQEPPADWLDWEKR YSDYDSHICEALGYLQSHLMNTRPSVALG
Sbjct: 61  MIVLRKRIHEIKMAEQRQEPPADWLDWEKRYYSDYDSHICEALGYLQSHLMNTRPSVALG 120

Query: 61  MLLLIIISVPLSSALLLHRFLHIAVALLAGFSPAS 96
           MLLLII+SVPLSSALLLHRF HIAVALLAGFSPAS
Sbjct: 121 MLLLIIVSVPLSSALLLHRFFHIAVALLAGFSPAS 155

[Close]

BLAST of CSPI05G19680 vs. ExPASy TrEMBL
Match: A0A6J1JZG1 (uncharacterized protein LOC111489262 OS=Cucurbita maxima OX=3661 GN=LOC111489262 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 2.7e-35
Identity = 77/90 (85.56%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 1   MIVLRKRIHEIKMAEQRQEPPADWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPSVALG 60
           MIVLRKRIHEIKM EQ  EPP+DWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPSV+LG
Sbjct: 63  MIVLRKRIHEIKMVEQSHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPSVSLG 122

Query: 61  MLLLIIISVPLSSALLLHRFLHIAVALLAG 91
           +LLLI +SVPLSSA++LHRF+ IA ALLAG
Sbjct: 123 ILLLITLSVPLSSAVILHRFIDIAAALLAG 152

[Close]

BLAST of CSPI05G19680 vs. NCBI nr
Match: XP_004150478.1 (uncharacterized protein LOC101215395 [Cucumis sativus])

HSP 1 Score: 183.3 bits (464), Expect = 9.6e-43
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 1   MIVLRKRIHEIKMAEQRQEPPADWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPSVALG 60
           MIVLRKRIHEIKMAEQRQEPPADWLDWEKR YSDYDSHICEALGYLQSHLMNTRPSVALG
Sbjct: 65  MIVLRKRIHEIKMAEQRQEPPADWLDWEKRWYSDYDSHICEALGYLQSHLMNTRPSVALG 124

Query: 61  MLLLIIISVPLSSALLLHRFLHIAVALLAGFSPAS 96
           MLLLIIISVPLSSALLLHRFLHIAVALLAGFSPAS
Sbjct: 125 MLLLIIISVPLSSALLLHRFLHIAVALLAGFSPAS 159

[Close]

BLAST of CSPI05G19680 vs. NCBI nr
Match: KAA0046315.1 (uncharacterized protein E6C27_scaffold149G00240 [Cucumis melo var. makuwa])

HSP 1 Score: 181.4 bits (459), Expect = 3.7e-42
Identity = 92/95 (96.84%), Postives = 93/95 (97.89%), Query Frame = 0


Query: 1   MIVLRKRIHEIKMAEQRQEPPADWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPSVALG 60
           MIVLRKRIHEIKMAEQRQEPPADWLDWEKR YSDYDSHICEALGYLQSHLMNTRPSVALG
Sbjct: 66  MIVLRKRIHEIKMAEQRQEPPADWLDWEKRYYSDYDSHICEALGYLQSHLMNTRPSVALG 125

Query: 61  MLLLIIISVPLSSALLLHRFLHIAVALLAGFSPAS 96
           MLLLII+SVPLSSALLLHRF HIAVALLAGFSPAS
Sbjct: 126 MLLLIIVSVPLSSALLLHRFFHIAVALLAGFSPAS 160

[Close]

BLAST of CSPI05G19680 vs. NCBI nr
Match: TYK26815.1 (uncharacterized protein E5676_scaffold50596G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 181.4 bits (459), Expect = 3.7e-42
Identity = 92/95 (96.84%), Postives = 93/95 (97.89%), Query Frame = 0


Query: 1  MIVLRKRIHEIKMAEQRQEPPADWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPSVALG 60
          MIVLRKRIHEIKMAEQRQEPPADWLDWEKR YSDYDSHICEALGYLQSHLMNTRPSVALG
Sbjct: 1  MIVLRKRIHEIKMAEQRQEPPADWLDWEKRYYSDYDSHICEALGYLQSHLMNTRPSVALG 60

Query: 61 MLLLIIISVPLSSALLLHRFLHIAVALLAGFSPAS 96
          MLLLII+SVPLSSALLLHRF HIAVALLAGFSPAS
Sbjct: 61 MLLLIIVSVPLSSALLLHRFFHIAVALLAGFSPAS 95

[Close]

BLAST of CSPI05G19680 vs. NCBI nr
Match: XP_008437695.1 (PREDICTED: uncharacterized protein LOC103483039, partial [Cucumis melo])

HSP 1 Score: 181.4 bits (459), Expect = 3.7e-42
Identity = 92/95 (96.84%), Postives = 93/95 (97.89%), Query Frame = 0


Query: 1   MIVLRKRIHEIKMAEQRQEPPADWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPSVALG 60
           MIVLRKRIHEIKMAEQRQEPPADWLDWEKR YSDYDSHICEALGYLQSHLMNTRPSVALG
Sbjct: 61  MIVLRKRIHEIKMAEQRQEPPADWLDWEKRYYSDYDSHICEALGYLQSHLMNTRPSVALG 120

Query: 61  MLLLIIISVPLSSALLLHRFLHIAVALLAGFSPAS 96
           MLLLII+SVPLSSALLLHRF HIAVALLAGFSPAS
Sbjct: 121 MLLLIIVSVPLSSALLLHRFFHIAVALLAGFSPAS 155

[Close]

BLAST of CSPI05G19680 vs. NCBI nr
Match: XP_038875502.1 (uncharacterized protein LOC120067929 [Benincasa hispida])

HSP 1 Score: 163.7 bits (413), Expect = 7.9e-37
Identity = 82/94 (87.23%), Postives = 86/94 (91.49%), Query Frame = 0


Query: 1   MIVLRKRIHEIKMAEQRQEPPADWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPSVALG 60
           MIVLRKRIHEIKMAEQ  EPPADWLDWEKR YSDYDSHICEALGYLQ+HLMNTRPSVALG
Sbjct: 64  MIVLRKRIHEIKMAEQSHEPPADWLDWEKRYYSDYDSHICEALGYLQTHLMNTRPSVALG 123

Query: 61  MLLLIIISVPLSSALLLHRFLHIAVALLAGFSPA 95
           MLLLI +SVP SSA+LLHRF  IA ALLAGFSP+
Sbjct: 124 MLLLITLSVPFSSAILLHRFFQIAAALLAGFSPS 157

[Close]

BLAST of CSPI05G19680 vs. TAIR 10
Match: AT2G01300.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15010.1); Has 73 Blast hits to 73 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 104.8 bits (260), Expect = 4.0e-23
Identity = 51/94 (54.26%), Postives = 71/94 (75.53%), Query Frame = 0


Query: 1   MIVLRKRIHEIKMAEQRQEPPADWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPSVALG 60
           MIVLRKRIHE+KM E+  EPP+ W+DWEKR Y+ YDS IC+++G LQS LMN+RP+VA+ 
Sbjct: 60  MIVLRKRIHEMKMVERNYEPPSHWMDWEKRFYNSYDSVICDSVGLLQSFLMNSRPTVAIA 119

Query: 61  MLLLIIISVPLSSALLLHRFLHIAVALLAGFSPA 95
            LL +++SVP+SS ++  R + +   LLA  + A
Sbjct: 120 TLLFLLVSVPVSSTVIAFRLIDLLHWLLAAATSA 153

[Close]

BLAST of CSPI05G19680 vs. TAIR 10
Match: AT1G15010.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01300.1); Has 71 Blast hits to 71 proteins in 13 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 102.8 bits (255), Expect = 1.5e-22
Identity = 51/88 (57.95%), Postives = 68/88 (77.27%), Query Frame = 0


Query: 1   MIVLRKRIHEIKMAEQRQEPPADWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPSVALG 60
           M+VLRKRIHE+KM E+  EPP+ W+ WEKR Y +YD+ IC+AL  LQ+ LMN+RPSVA G
Sbjct: 49  MVVLRKRIHEMKMVERNFEPPSHWMQWEKRFYCNYDATICDALTLLQTFLMNSRPSVAFG 108

Query: 61  MLLLIIISVPLSSALLLHRFLHIAVALL 89
             LL+++SVP+SSA+   R L +A+ LL
Sbjct: 109 TCLLLLVSVPVSSAVFAFRILDLALWLL 136

The following BLAST results are available for this feature:

BLAST of CSPI05G19680 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI05G19680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPI5	4.7e-43	98.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G571480 PE=4 SV=1	[more]
A0A5D3DU22	1.8e-42	96.84	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TY46	1.8e-42	96.84	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3AV87	1.8e-42	96.84	uncharacterized protein LOC103483039 OS=Cucumis melo OX=3656 GN=LOC103483039 PE=...	[more]
A0A6J1JZG1	2.7e-35	85.56	uncharacterized protein LOC111489262 OS=Cucurbita maxima OX=3661 GN=LOC111489262...	[more]

BLAST of CSPI05G19680 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150478.1	9.6e-43	98.95	uncharacterized protein LOC101215395 [Cucumis sativus]	[more]
KAA0046315.1	3.7e-42	96.84	uncharacterized protein E6C27_scaffold149G00240 [Cucumis melo var. makuwa]	[more]
TYK26815.1	3.7e-42	96.84	uncharacterized protein E5676_scaffold50596G00010 [Cucumis melo var. makuwa]	[more]
XP_008437695.1	3.7e-42	96.84	PREDICTED: uncharacterized protein LOC103483039, partial [Cucumis melo]	[more]
XP_038875502.1	7.9e-37	87.23	uncharacterized protein LOC120067929 [Benincasa hispida]	[more]

BLAST of CSPI05G19680 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G01300.1	4.0e-23	54.26	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G15010.1	1.5e-22	57.95	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33782	OS01G0121600 PROTEIN	coord: 1..91
None	No IPR available	PANTHER	PTHR33782:SF13	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT	coord: 1..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G19680.1	CSPI05G19680.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane