CSPI05G17250 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI05G17250
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description50S ribosomal protein L23, chloroplastic
LocationChr5: 18487379 .. 18489605 (-)
RNA-Seq ExpressionCSPI05G17250
SyntenyCSPI05G17250
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTATTTTCCGCGTATTATCTACAAAACCCTAATATATAAGCGCATCATCTTCTCCCCTTGCGGAAACCTAGTTTTTCAGATAGCAGCTTCTTCGTCTGGGTAAGATTGCTTCACTTCCTCTCAAACTCTCCCCCTTCGATTTTATGGTTACGGTTAGGGTTTACACTTCACTCATTGATATTTCTGTGTGTGTGTGTTCTTTTTCTATCCTGAACAGGTCGGAGTAGGGATTAGGTAGAGGACTCTGCAATGGCTCCAAAAGGTAAGCCTATCAACTTATACGTCTTAACAGTTAATCGATTACACTTTTATGCACGGTACATTCAAGTTATTTTCCGCGCTGTTTCATTTTTCATTACTGCCGTTTGTTCATTGAACAGTTGCGATTTGTTTCTTTAGAATCAGTTGTTGAAAATTAGCCGAGTTTAGAGAATTTCGGACATGAAGATGTTATCCAAATGAATCTACATCTGTATAATCTGTTTATAATTGTCCGCTGGCTCCTAACTTGTAATACGATCTAATAATTCGCTTGATTAGCTCAGGTGCTTTACTTGTTTTTTTTTTGGTCTGGTAAGCCCTATATTTTTAGATAGATTATATAGGGTCCAGATTGGGAAAATGGTGATTATCTATTGTGAATATTATAAGCTGTGTTAGAACATAGAAGGCTCATAGAATTTGTAGAAGATAGGTGTTTCACTCATCGTGGTATGTGTGGTTTTGAGATTTATGGACAAAGATCATTAATGCTGCTATGTGGTTTGTGAAATGGAACAATGTTTGTGACGTGCTGAAGTTGGTTTGATTCAATAATTTAGTATTATATGATTGTGTGTTGTTCTGGGTCGTTCGTGTTTTCACCTTTTATCTTTGCCAAGGCTCAGCTCTGATGTCTTTCCCATTCTGAAAAAGTACTGTTTAAAATGGCGTAACTTTTGAATGAAATACACTACATATGAATGGAAGCGTTTGGCATTATAATAATAATTATTAGTCTTTCGATACGTGGTTCCATTTGGTAGTGATTTTCTTTATTGTATGCATCTAGGAATGAATTCAAAACACTTCAACACACAAAGTACTTGGATAATGTATTAGTTTTAAGTGAATAAACTAATCAAGCTTGATACTTCTCTTCCCCTCAGCTGACAGCACCAAGAAGACTGACCCTAAGGCTCAAGCCTTGAAAACTGCCAAGGCAGTAAAATCGGGCCCAACATTTAAGAAGAAAGCCAAGAAAATCAGGACATCCGTCACATTTCACCGTCCAAAGACATTGAAGAAGGACAGAAATCCCAAGTATCCACGCATTAGTGTTACTCCACGGAATAAGTTGGACCAGTATCAGGTTCTTAAATACCCTCTGACTACTGAGTCTGCAATGAAAAAGATTGAGGACAACAATACTTTGGTTTTCATTGTGGACATTCGCGCTGATAAGAAAAAGATCAAGGATGCTGTGAAAAAGATGTATGACATCCAGACCAAGAAAGTGAACACGTTGATCAGGTAATTTTAATTGAACATCTCTGTAGTTTCATTCAAGAATGTTGAGTTGTACTCGTCTTAGATGTGATCTCAATCTTACCCAATATTTTGTGGACATTTCTTGTCCAATCCACTGAGTTCTAACAGTATAAATGATTAGCCTAGTCTCATGTTATCGAAAGGATCTTTCGAAGCACTTTGATTGCTATCATTAAATGTTTATTTAAGTCACAGTGCCAAGTTATCTTTTAACTTGAACATTTCAATTATGATCAATAAAATGTTTATTTATGGCATGATTTTATCTGACAACGTGCTTTATACCACAATTGCAGACCTGATGGAACCAAGAAGGCATACGTTAGGCTGACTCCCGATTATGATGCTTTGGATGTTGCAAACAAGATTGGAATCATCTAAGTTAATTAGCACTCGTTTTTTGTTTGAGAAAACTGATTATCTTTCTGCAATGACAATTTTGATTTATGGAATGACCTCGATTTTCTCCAGCAAATTAGTAAGATGTTTTCTACTAAGCTATTGCAACGCATGTTGACTGAACCGTAGAATGTGTTCTTGAATGTTTTTTGTAGTTTGTATTTTTTTAACTCAAATGACTTCACTCATTTCCATTCACGATACAATCTAGTGTCGGGTCTGGCCCCGCATGGTTCCAACTAAGCCTGCTAGGTGTATTTTCTTCAAACCAAGAAATTTTCACCAATTTTTCTCGGTC

mRNA sequence

TTATTTTCCGCGTATTATCTACAAAACCCTAATATATAAGCGCATCATCTTCTCCCCTTGCGGAAACCTAGTTTTTCAGATAGCAGCTTCTTCGTCTGGGTCGGAGTAGGGATTAGGTAGAGGACTCTGCAATGGCTCCAAAAGCTGACAGCACCAAGAAGACTGACCCTAAGGCTCAAGCCTTGAAAACTGCCAAGGCAGTAAAATCGGGCCCAACATTTAAGAAGAAAGCCAAGAAAATCAGGACATCCGTCACATTTCACCGTCCAAAGACATTGAAGAAGGACAGAAATCCCAAGTATCCACGCATTAGTGTTACTCCACGGAATAAGTTGGACCAGTATCAGGTTCTTAAATACCCTCTGACTACTGAGTCTGCAATGAAAAAGATTGAGGACAACAATACTTTGGTTTTCATTGTGGACATTCGCGCTGATAAGAAAAAGATCAAGGATGCTGTGAAAAAGATGTATGACATCCAGACCAAGAAAGTGAACACGTTGATCAGACCTGATGGAACCAAGAAGGCATACGTTAGGCTGACTCCCGATTATGATGCTTTGGATGTTGCAAACAAGATTGGAATCATCTAAGTTAATTAGCACTCGTTTTTTGTTTGAGAAAACTGATTATCTTTCTGCAATGACAATTTTGATTTATGGAATGACCTCGATTTTCTCCAGCAAATTAGTAAGATGTTTTCTACTAAGCTATTGCAACGCATGTTGACTGAACCGTAGAATGTGTTCTTGAATGTTTTTTGTAGTTTGTATTTTTTTAACTCAAATGACTTCACTCATTTCCATTCACGATACAATCTAGTGTCGGGTCTGGCCCCGCATGGTTCCAACTAAGCCTGCTAGGTGTATTTTCTTCAAACCAAGAAATTTTCACCAATTTTTCTCGGTC

Coding sequence (CDS)

ATGGCTCCAAAAGCTGACAGCACCAAGAAGACTGACCCTAAGGCTCAAGCCTTGAAAACTGCCAAGGCAGTAAAATCGGGCCCAACATTTAAGAAGAAAGCCAAGAAAATCAGGACATCCGTCACATTTCACCGTCCAAAGACATTGAAGAAGGACAGAAATCCCAAGTATCCACGCATTAGTGTTACTCCACGGAATAAGTTGGACCAGTATCAGGTTCTTAAATACCCTCTGACTACTGAGTCTGCAATGAAAAAGATTGAGGACAACAATACTTTGGTTTTCATTGTGGACATTCGCGCTGATAAGAAAAAGATCAAGGATGCTGTGAAAAAGATGTATGACATCCAGACCAAGAAAGTGAACACGTTGATCAGACCTGATGGAACCAAGAAGGCATACGTTAGGCTGACTCCCGATTATGATGCTTTGGATGTTGCAAACAAGATTGGAATCATCTAA

Protein sequence

MAPKADSTKKTDPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISVTPRNKLDQYQVLKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII*
Homology
[Close]
BLAST of CSPI05G17250 vs. ExPASy Swiss-Prot
Match: Q9AT35 (60S ribosomal protein L23a OS=Daucus carota OX=4039 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 6.5e-68
Identity = 139/154 (90.26%), Postives = 144/154 (93.51%), Query Frame = 0 

Query: 1   MAP-KADSTKKTDPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D TKK+D KAQALKTAKAVKSG T  KK KKIRTSVTFHRP+TL KDRNPKYPR
Sbjct: 1   MSPAKVDVTKKSDAKAQALKTAKAVKSGTTKFKKVKKIRTSVTFHRPRTLTKDRNPKYPR 60

Query: 61  ISVTPRNKLDQYQVLKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           IS TPRNKLDQYQ+LKYPLTTESAMKKIEDNNTLVFIVDIRA+KKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of CSPI05G17250 vs. ExPASy Swiss-Prot
Match: Q07761 (60S ribosomal protein L23a OS=Nicotiana tabacum OX=4097 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 2.5e-67
Identity = 137/154 (88.96%), Postives = 143/154 (92.86%), Query Frame = 0 

Query: 1   MAP-KADSTKKTDPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           MAP KAD +KK+DPKAQA K AKAVKSG T KKK++KIRT VTFHRPKTLKKDRNPKYPR
Sbjct: 1   MAPAKADPSKKSDPKAQAAKVAKAVKSGSTLKKKSQKIRTKVTFHRPKTLKKDRNPKYPR 60

Query: 61  ISVTPRNKLDQYQVLKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           IS   RNKLDQY +LKYPLTTESAMKKIEDNNTLVFIVDI+ADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISAPGRNKLDQYGILKYPLTTESAMKKIEDNNTLVFIVDIKADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of CSPI05G17250 vs. ExPASy Swiss-Prot
Match: O22644 (60S ribosomal protein L23A OS=Fritillaria agrestis OX=64177 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 2.7e-66
Identity = 137/154 (88.96%), Postives = 140/154 (90.91%), Query Frame = 0 

Query: 1   MAPKADSTKKTDPKAQALKTAKAVKSG-PTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           MAP A   KK D KAQALK AKAVKSG  T +KKAKKIRTSVTFHRPKTLKKDRNPKYPR
Sbjct: 1   MAPPAKVAKKPDGKAQALKVAKAVKSGVSTLQKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60

Query: 61  ISVTPRNKLDQYQVLKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           IS  PRNKLD YQ+LKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTK
Sbjct: 61  ISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALD+ANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDIANKIGII 154

[Close]
BLAST of CSPI05G17250 vs. ExPASy Swiss-Prot
Match: Q8LD46 (60S ribosomal protein L23a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL23AA PE=2 SV=2)

HSP 1 Score: 252.3 bits (643), Expect = 3.5e-66
Identity = 135/154 (87.66%), Postives = 140/154 (90.91%), Query Frame = 0 

Query: 1   MAP-KADSTKKTDPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D+TKK DPKA+ALK AKAVKSG  FKKK KKIRT VTFHRPKTL K R  KYP+
Sbjct: 1   MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPK 60

Query: 61  ISVTPRNKLDQYQVLKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           IS TPRNKLD YQ+LKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of CSPI05G17250 vs. ExPASy Swiss-Prot
Match: Q9M3C3 (60S ribosomal protein L23a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL23AB PE=2 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 3.9e-65
Identity = 134/154 (87.01%), Postives = 138/154 (89.61%), Query Frame = 0 

Query: 1   MAP-KADSTKKTDPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D TKK DPKA+ALK AKAVKSG   KK AKKIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 61  ISVTPRNKLDQYQVLKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           IS TPRNKLD YQ+LKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of CSPI05G17250 vs. ExPASy TrEMBL
Match: A0A0A0KNR3 (50S ribosomal protein L23, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_5G505240 PE=3 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 4.3e-75
Identity = 152/153 (99.35%), Postives = 153/153 (100.00%), Query Frame = 0 

Query: 1   MAPKADSTKKTDPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKADSTKKTDPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADSTKKTDPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SVTPRNKLDQYQVLKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           SVTPRNKLDQYQ+LKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of CSPI05G17250 vs. ExPASy TrEMBL
Match: A0A5D3C5W3 (50S ribosomal protein L23, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002640 PE=3 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 4.8e-74
Identity = 150/153 (98.04%), Postives = 152/153 (99.35%), Query Frame = 0 

Query: 1   MAPKADSTKKTDPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKADSTKK DPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKK+RNPKYPRI
Sbjct: 1   MAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60

Query: 61  SVTPRNKLDQYQVLKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           SVTPRNKLDQYQ+LKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of CSPI05G17250 vs. ExPASy TrEMBL
Match: A0A1S3CJE6 (50S ribosomal protein L23, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501656 PE=3 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 4.8e-74
Identity = 150/153 (98.04%), Postives = 152/153 (99.35%), Query Frame = 0 

Query: 1   MAPKADSTKKTDPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKADSTKK DPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKK+RNPKYPRI
Sbjct: 1   MAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60

Query: 61  SVTPRNKLDQYQVLKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           SVTPRNKLDQYQ+LKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of CSPI05G17250 vs. ExPASy TrEMBL
Match: A0A6J1DJ76 (50S ribosomal protein L23, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111021582 PE=3 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 1.1e-73
Identity = 149/153 (97.39%), Postives = 151/153 (98.69%), Query Frame = 0 

Query: 1   MAPKADSTKKTDPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKAD+TKK DPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADNTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SVTPRNKLDQYQVLKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           S TPRNKLDQYQ+LKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of CSPI05G17250 vs. ExPASy TrEMBL
Match: A0A6J1K8U2 (50S ribosomal protein L23, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111491145 PE=3 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.4e-73
Identity = 149/153 (97.39%), Postives = 151/153 (98.69%), Query Frame = 0 

Query: 1   MAPKADSTKKTDPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKADS+KK DPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SVTPRNKLDQYQVLKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           S TPRNKLDQYQ+LKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of CSPI05G17250 vs. NCBI nr
Match: XP_004149813.1 (60S ribosomal protein L23a [Cucumis sativus] >KGN51263.1 hypothetical protein Csa_007796 [Cucumis sativus])

HSP 1 Score: 290.4 bits (742), Expect = 9.0e-75
Identity = 152/153 (99.35%), Postives = 153/153 (100.00%), Query Frame = 0 

Query: 1   MAPKADSTKKTDPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKADSTKKTDPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADSTKKTDPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SVTPRNKLDQYQVLKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           SVTPRNKLDQYQ+LKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of CSPI05G17250 vs. NCBI nr
Match: XP_008463516.1 (PREDICTED: 60S ribosomal protein L23a [Cucumis melo] >TYK05769.1 60S ribosomal protein L23a [Cucumis melo var. makuwa])

HSP 1 Score: 287.0 bits (733), Expect = 9.9e-74
Identity = 150/153 (98.04%), Postives = 152/153 (99.35%), Query Frame = 0 

Query: 1   MAPKADSTKKTDPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKADSTKK DPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKK+RNPKYPRI
Sbjct: 1   MAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60

Query: 61  SVTPRNKLDQYQVLKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           SVTPRNKLDQYQ+LKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of CSPI05G17250 vs. NCBI nr
Match: XP_022154290.1 (60S ribosomal protein L23a [Momordica charantia] >XP_022154291.1 60S ribosomal protein L23a [Momordica charantia])

HSP 1 Score: 285.8 bits (730), Expect = 2.2e-73
Identity = 149/153 (97.39%), Postives = 151/153 (98.69%), Query Frame = 0 

Query: 1   MAPKADSTKKTDPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKAD+TKK DPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADNTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SVTPRNKLDQYQVLKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           S TPRNKLDQYQ+LKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of CSPI05G17250 vs. NCBI nr
Match: XP_022995723.1 (60S ribosomal protein L23a [Cucurbita maxima])

HSP 1 Score: 285.4 bits (729), Expect = 2.9e-73
Identity = 149/153 (97.39%), Postives = 151/153 (98.69%), Query Frame = 0 

Query: 1   MAPKADSTKKTDPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKADS+KK DPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SVTPRNKLDQYQVLKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           S TPRNKLDQYQ+LKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of CSPI05G17250 vs. NCBI nr
Match: KAG7031627.1 (60S ribosomal protein L23a, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 284.6 bits (727), Expect = 4.9e-73
Identity = 149/153 (97.39%), Postives = 150/153 (98.04%), Query Frame = 0 

Query: 1   MAPKADSTKKTDPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKADS KK DPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 33  MAPKADSIKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 92

Query: 61  SVTPRNKLDQYQVLKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           S TPRNKLDQYQ+LKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 93  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 152

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 153 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 185

[Close]
BLAST of CSPI05G17250 vs. TAIR 10
Match: AT2G39460.1 (ribosomal protein L23AA )

HSP 1 Score: 252.3 bits (643), Expect = 2.5e-67
Identity = 135/154 (87.66%), Postives = 140/154 (90.91%), Query Frame = 0 

Query: 1   MAP-KADSTKKTDPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D+TKK DPKA+ALK AKAVKSG  FKKK KKIRT VTFHRPKTL K R  KYP+
Sbjct: 1   MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPK 60

Query: 61  ISVTPRNKLDQYQVLKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           IS TPRNKLD YQ+LKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of CSPI05G17250 vs. TAIR 10
Match: AT2G39460.2 (ribosomal protein L23AA )

HSP 1 Score: 252.3 bits (643), Expect = 2.5e-67
Identity = 135/154 (87.66%), Postives = 140/154 (90.91%), Query Frame = 0 

Query: 1   MAP-KADSTKKTDPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D+TKK DPKA+ALK AKAVKSG  FKKK KKIRT VTFHRPKTL K R  KYP+
Sbjct: 1   MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPK 60

Query: 61  ISVTPRNKLDQYQVLKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           IS TPRNKLD YQ+LKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of CSPI05G17250 vs. TAIR 10
Match: AT3G55280.1 (ribosomal protein L23AB )

HSP 1 Score: 248.8 bits (634), Expect = 2.8e-66
Identity = 134/154 (87.01%), Postives = 138/154 (89.61%), Query Frame = 0 

Query: 1   MAP-KADSTKKTDPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D TKK DPKA+ALK AKAVKSG   KK AKKIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 61  ISVTPRNKLDQYQVLKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           IS TPRNKLD YQ+LKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of CSPI05G17250 vs. TAIR 10
Match: AT3G55280.2 (ribosomal protein L23AB )

HSP 1 Score: 248.8 bits (634), Expect = 2.8e-66
Identity = 134/154 (87.01%), Postives = 138/154 (89.61%), Query Frame = 0 

Query: 1   MAP-KADSTKKTDPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D TKK DPKA+ALK AKAVKSG   KK AKKIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 61  ISVTPRNKLDQYQVLKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           IS TPRNKLD YQ+LKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of CSPI05G17250 vs. TAIR 10
Match: AT3G55280.3 (ribosomal protein L23AB )

HSP 1 Score: 237.7 bits (605), Expect = 6.4e-63
Identity = 130/154 (84.42%), Postives = 134/154 (87.01%), Query Frame = 0 

Query: 1   MAP-KADSTKKTDPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D TKK DPKA+ALK AKAVKSG        KIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQI------KIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 61  ISVTPRNKLDQYQVLKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           IS TPRNKLD YQ+LKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 148

The following BLAST results are available for this feature:
BLAST of CSPI05G17250 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9AT356.5e-6890.2660S ribosomal protein L23a OS=Daucus carota OX=4039 GN=RPL23A PE=2 SV=1[more]
Q077612.5e-6788.9660S ribosomal protein L23a OS=Nicotiana tabacum OX=4097 GN=RPL23A PE=2 SV=1[more]
O226442.7e-6688.9660S ribosomal protein L23A OS=Fritillaria agrestis OX=64177 GN=RPL23A PE=2 SV=1[more]
Q8LD463.5e-6687.6660S ribosomal protein L23a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL23AA PE=2 SV=... [more]
Q9M3C33.9e-6587.0160S ribosomal protein L23a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL23AB PE=2 SV=... [more]
BLAST of CSPI05G17250 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KNR34.3e-7599.3550S ribosomal protein L23, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_5G505... [more]
A0A5D3C5W34.8e-7498.0450S ribosomal protein L23, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A1S3CJE64.8e-7498.0450S ribosomal protein L23, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501656... [more]
A0A6J1DJ761.1e-7397.3950S ribosomal protein L23, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A6J1K8U21.4e-7397.3950S ribosomal protein L23, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11149... [more]
BLAST of CSPI05G17250 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004149813.19.0e-7599.3560S ribosomal protein L23a [Cucumis sativus] >KGN51263.1 hypothetical protein Cs... [more]
XP_008463516.19.9e-7498.04PREDICTED: 60S ribosomal protein L23a [Cucumis melo] >TYK05769.1 60S ribosomal p... [more]
XP_022154290.12.2e-7397.3960S ribosomal protein L23a [Momordica charantia] >XP_022154291.1 60S ribosomal p... [more]
XP_022995723.12.9e-7397.3960S ribosomal protein L23a [Cucurbita maxima][more]
KAG7031627.14.9e-7397.3960S ribosomal protein L23a, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of CSPI05G17250 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G39460.12.5e-6787.66ribosomal protein L23AA [more]
AT2G39460.22.5e-6787.66ribosomal protein L23AA [more]
AT3G55280.12.8e-6687.01ribosomal protein L23AB [more]
AT3G55280.22.8e-6687.01ribosomal protein L23AB [more]
AT3G55280.36.4e-6384.42ribosomal protein L23AB [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 34..153
e-value: 6.1E-53
score: 180.0
IPR013025Ribosomal protein L25/L23PFAMPF00276Ribosomal_L23coord: 73..135
e-value: 2.0E-14
score: 53.7
IPR013025Ribosomal protein L25/L23PANTHERPTHR1162060S RIBOSOMAL PROTEIN L23Acoord: 1..153
IPR013025Ribosomal protein L25/L23HAMAPMF_01369_ARibosomal_L23_Acoord: 73..153
score: 22.366062
IPR005633Ribosomal protein L23/L25, N-terminalPFAMPF03939Ribosomal_L23eNcoord: 14..62
e-value: 1.4E-18
score: 66.8
IPR019985Ribosomal protein L23TIGRFAMTIGR03636TIGR03636coord: 77..153
e-value: 5.0E-29
score: 98.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..16
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..38
NoneNo IPR availablePANTHERPTHR11620:SF81RIBOSOMAL PROTEIN L23A, PUTATIVE-RELATEDcoord: 1..153
IPR001014Ribosomal protein L23/L25, conserved sitePROSITEPS00050RIBOSOMAL_L23coord: 131..146
IPR012678Ribosomal protein L23/L15e core domain superfamilySUPERFAMILY54189Ribosomal proteins S24e, L23 and L15ecoord: 71..146

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G17250.1CSPI05G17250.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000027 ribosomal large subunit assembly
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003729 mRNA binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome