CSPI05G15080 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI05G15080
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	Chr5: 15843379 .. 15845377 (-)
RNA-Seq Expression	CSPI05G15080
Synteny	CSPI05G15080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTATAACAAGAGTAGAAATAGAGAAGTTTGATGGAAATGGAGACTTTGTTTTATGGAAAGCAAAGATCAAAGCGTTGCTTGGACAGCAAAAGACTCATAAAGTCCTTTTAGATCCTTCATAACTTCCAACAACCCTCACAACAGTACAAATAGAAAAAATGGAATTAAATGTATATGGAACACTAATACTAAACCTTAGTGACAACATAATTAGGCAAGTTCTAGAAGAAGAAACAACACATAAAGTTTGGATGAAACTAGAAAATCTATATGCCTCTAAAGATCTCCCAAACAAAATGTACCTAAGGGATAATATTTTCACATATAAAATGGATCCTTCTAAAACCTTATCTGAAAACTTAGATGAATTCAAGAAAATAGTTTTAGATTTTAAAACCCTTGAGGACAAACTAGGTGATGAAAATGAGGCATTCGTCCTTTTAAATTCTTTATCCGAGGCATACAAAGAAGTAAAAAATGCTCTAAAATATGGAAGAGACTCAATAAAAACAGATGTCATAATATCAGCTCTAAGAACTAGAGAATTAGAAATACATTCATCACACAAAGAAAATCATAGTGGTGATGGATTGTTTGTCAAAGGTAAACCCCAAAACAATCAAAGTAAAAACAGTAACAAATCTTTTCTAATGAAGACAAGAAAGGAAAACAGAAAAAGAAATGTAAATACTGTAAAAAGAAGGGACACTTCATACAAGAATGTTTTTTCCTTAAAAGAAAGAATCAAGAAAAAGAAAAAGATTCTAAAGGAAAACAACCAGAAGCCTCTATAGTAGAAAGCTCTTTTACCTACACAGATGCCTTGGCATCAACCTTAGACCAAGCCAACCATGTCAACCCCTTAGGAAAACATGATTGGGTCCTAGACTCAGGATGCACCTACCATATGACACCTTTTAGAGCATGGTTCAATACCTATAGAGAGATTAGTAGAGAATCTGTGTTCATGGGGAATAATAATGAAAGTAACATTGCTGGAATTGGAACAGTTACCATGAAACTAAAAGATGGGACTGTAAAACTCCTTAGAAATGTAAGACATGTTCCTCACCTTAAAATAAATTTAATCTCCCTAGGAATGTTAGACTCTCTAGGGTGTGAATATAAAGGAAAATGTGGAGTTTTCCAAGTCTTTATGGGATCTAAGTTAGTCTTGGTTGGGGAAAAGGTAAATGATTTGTTCATAATAAAAGGAGTAGAAATGATAGAGGAGGCAAATACAGTTTTATCTCTAAACCTAACAGAAGCTGATATTTGGCATAAAAGATTGTCCCATATTAGTCAGAAGGGTCTTGAGGCACTATCTAAACAGGACATTCTGCCTCAAGACATATGCAGCAAACTGTCCTTTTGTGAACATTGTGTACTAGGCAAAGCAAGAAAACAAAACTTCACCAAAGCACAACACACAACAAAAGGAATCCTGGACTACATCCATTCGGATCTATGGGTTCAGCATCCACTCCAAGCCTAAGTAGCTCAAGGTATTTTCTATCATTTACTGATGATTTTTCTAGAATAAGTTGGATTTATTTCTTAAAAACTAAAGATCAAGTTTTTGAAAAATTTAAAGAATGAAAACTAATGATAGAAAAATAAATTGATAAAAAGGTTAAATATCTTAGAACTAACAATGGTTTAGAGTTTTGTGGAGAAGTGTTTAATAGTTTTTGCAGGGAAAGTGGAATCACAAGACACAAAACTGTGACATACACACCTCAACAAAATGGAGTGGCAGAAAGACTCAACAGAACTATAATGGAAAGGGTAAGATGCCTATTATCAAATGCCATTCTAGAAGAAAAGTTTTGGGTTGAGGTTGCTGCCTACGTTGTGTACACATTGAATAGAAGTCCTCACACCTCCTTGGGATTCCTAACACCTGAGGAGAAATGGTCCAAACACCCACCAAGTCTAAATGACCTTAAGGTGTTTGGATGTGTAGGGTATGCTGACCAAAATAAAGGAAACTAA

mRNA sequence

ATGGCTATAACAAGAGTAGAAATAGAGAAGTTTGATGGAAATGGAGACTTTGTTTTATGGAAAGCAAAGATCAAAGCGTTGCTTGGACAGCAAAAGACTCATAAAGACAAACTAGGTGATGAAAATGAGGCATTCGTCCTTTTAAATTCTTTATCCGAGGCATACAAAGAAGTAAAAAATGCTCTAAAATATGGAAGAGACTCAATAAAAACAGATGTCATAATATCAGCTCTAAGAACTAGAGAATTAGAAATACATTCATCACACAAAGAAAATCATAGTGGTGATGGATTGTTTGTCAAAGATGCCTTGGCATCAACCTTAGACCAAGCCAACCATGTCAACCCCTTAGGAAAACATGATTGGGTCCTAGACTCAGGATGCACCTACCATATGACACCTTTTAGAGCATGGTTCAATACCTATAGAGAGATTAGTAGAGAATCTGTGTTCATGGGGAATAATAATGAAAGTAACATTGCTGGAATTGGAACAGTTACCATGAAACTAAAAGATGGGACTGTAAAACTCCTTAGAAATGTAAGACATGTTCCTCACCTTAAAATAAATTTAATCTCCCTAGGAATGTTAGACTCTCTAGGGTGTGAATATAAAGGAAAATGTGGAGTTTTCCAAGTCTTTATGGGATCTAAGTTAGTCTTGGTTGGGGAAAAGGTAAATGATTTGTTCATAATAAAAGGAGTAGAAATGATAGAGGAGGCAAATACAGTTTTATCTCTAAACCTAACAGAAGCTGATATTTGGCATAAAAGATTGTCCCATATTAGTCAGAAGGGTCTTGAGGCACTATCTAAACAGGACATTCTGCCTCAAGACATATGCAGCAAACTGCAAAGCAAGAAAACAAAACTTCACCAAAGCACAACACACAACAAAAGGAATCCTGGACTACATCCATTCGGATCTATGGGTTCAGCATCCACTCCAAGCCTAAGTAGCTCAAGGGAAAGTGGAATCACAAGACACAAAACTGTGACATACACACCTCAACAAAATGGAGTGGCAGAAAGACTCAACAGAACTATAATGGAAAGGGTAAGATGCCTATTATCAAATGCCATTCTAGAAGAAAAGTTTTGGGTTGAGGTTGCTGCCTACGTTGTGTACACATTGAATAGAAGTCCTCACACCTCCTTGGGATTCCTAACACCTGAGGAGAAATGGTCCAAACACCCACCAAGTCTAAATGACCTTAAGGTGTTTGGATGTGTAGGGTATGCTGACCAAAATAAAGGAAACTAA

Coding sequence (CDS)

ATGGCTATAACAAGAGTAGAAATAGAGAAGTTTGATGGAAATGGAGACTTTGTTTTATGGAAAGCAAAGATCAAAGCGTTGCTTGGACAGCAAAAGACTCATAAAGACAAACTAGGTGATGAAAATGAGGCATTCGTCCTTTTAAATTCTTTATCCGAGGCATACAAAGAAGTAAAAAATGCTCTAAAATATGGAAGAGACTCAATAAAAACAGATGTCATAATATCAGCTCTAAGAACTAGAGAATTAGAAATACATTCATCACACAAAGAAAATCATAGTGGTGATGGATTGTTTGTCAAAGATGCCTTGGCATCAACCTTAGACCAAGCCAACCATGTCAACCCCTTAGGAAAACATGATTGGGTCCTAGACTCAGGATGCACCTACCATATGACACCTTTTAGAGCATGGTTCAATACCTATAGAGAGATTAGTAGAGAATCTGTGTTCATGGGGAATAATAATGAAAGTAACATTGCTGGAATTGGAACAGTTACCATGAAACTAAAAGATGGGACTGTAAAACTCCTTAGAAATGTAAGACATGTTCCTCACCTTAAAATAAATTTAATCTCCCTAGGAATGTTAGACTCTCTAGGGTGTGAATATAAAGGAAAATGTGGAGTTTTCCAAGTCTTTATGGGATCTAAGTTAGTCTTGGTTGGGGAAAAGGTAAATGATTTGTTCATAATAAAAGGAGTAGAAATGATAGAGGAGGCAAATACAGTTTTATCTCTAAACCTAACAGAAGCTGATATTTGGCATAAAAGATTGTCCCATATTAGTCAGAAGGGTCTTGAGGCACTATCTAAACAGGACATTCTGCCTCAAGACATATGCAGCAAACTGCAAAGCAAGAAAACAAAACTTCACCAAAGCACAACACACAACAAAAGGAATCCTGGACTACATCCATTCGGATCTATGGGTTCAGCATCCACTCCAAGCCTAAGTAGCTCAAGGGAAAGTGGAATCACAAGACACAAAACTGTGACATACACACCTCAACAAAATGGAGTGGCAGAAAGACTCAACAGAACTATAATGGAAAGGGTAAGATGCCTATTATCAAATGCCATTCTAGAAGAAAAGTTTTGGGTTGAGGTTGCTGCCTACGTTGTGTACACATTGAATAGAAGTCCTCACACCTCCTTGGGATTCCTAACACCTGAGGAGAAATGGTCCAAACACCCACCAAGTCTAAATGACCTTAAGGTGTTTGGATGTGTAGGGTATGCTGACCAAAATAAAGGAAACTAA

Protein sequence

MAITRVEIEKFDGNGDFVLWKAKIKALLGQQKTHKDKLGDENEAFVLLNSLSEAYKEVKNALKYGRDSIKTDVIISALRTRELEIHSSHKENHSGDGLFVKDALASTLDQANHVNPLGKHDWVLDSGCTYHMTPFRAWFNTYREISRESVFMGNNNESNIAGIGTVTMKLKDGTVKLLRNVRHVPHLKINLISLGMLDSLGCEYKGKCGVFQVFMGSKLVLVGEKVNDLFIIKGVEMIEEANTVLSLNLTEADIWHKRLSHISQKGLEALSKQDILPQDICSKLQSKKTKLHQSTTHNKRNPGLHPFGSMGSASTPSLSSSRESGITRHKTVTYTPQQNGVAERLNRTIMERVRCLLSNAILEEKFWVEVAAYVVYTLNRSPHTSLGFLTPEEKWSKHPPSLNDLKVFGCVGYADQNKGN*

Homology

[Close]

BLAST of CSPI05G15080 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 8.3e-33
Identity = 110/367 (29.97%), Postives = 161/367 (43.87%), Query Frame = 0


Query: 121 DWVLDSGCTYHMTPFRAWFNTYREISRESVFMGNNNESNIAGIGTVTMKLKDGTVKLLRN 180
           +WV+D+  ++H TP R  F  Y      +V MGN + S IAGIG + +K   G   +L++
Sbjct: 293 EWVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKD 352

Query: 181 VRHVPHLKINLISLGMLDSLGCEYKGKCGVFQVFMGSKLVLVGEKVNDLFIIKGVEMIEE 240
           VRHVP L++NLIS   LD  G E       +++  GS ++  G     L+         E
Sbjct: 353 VRHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAKGVARGTLYRTNAEICQGE 412

Query: 241 ANTVLSLNLTEADIWHKRLSHISQKGLEALSKQ--------------------------- 300
            N   + +    D+WHKR+ H+S+KGL+ L+K+                           
Sbjct: 413 LNA--AQDEISVDLWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSF 472

Query: 301 -----------DILPQDICSKLQ-----------------SKKTKLHQSTTHNKRNPGLH 360
                      D++  D+C  ++                 S+K  ++   T ++      
Sbjct: 473 QTSSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQ 532

Query: 361 PFGSMGSAST-----------PSLSSSRE-------SGITRHKTVTYTPQQNGVAERLNR 415
            F ++    T               +SRE        GI   KTV  TPQ NGVAER+NR
Sbjct: 533 KFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNR 592

[Close]

BLAST of CSPI05G15080 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 77.8 bits (190), Expect = 3.3e-13
Identity = 40/93 (43.01%), Postives = 53/93 (56.99%), Query Frame = 0


Query: 323 ESGITRHKTVTYTPQQNGVAERLNRTIMERVRCLLSNAILEEKFWVEVAAYVVYTLNRSP 382
           + GI+ H TV +TPQ NGV+ER+ RTI E+ R ++S A L++ FW E      Y +NR P
Sbjct: 566 KKGISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIP 625

Query: 383 HTSL--GFLTPEEKWSKHPPSLNDLKVFGCVGY 414
             +L     TP E W    P L  L+VFG   Y
Sbjct: 626 SRALVDSSKTPYEMWHNKKPYLKHLRVFGATVY 658

[Close]

BLAST of CSPI05G15080 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.7e-09
Identity = 33/91 (36.26%), Postives = 51/91 (56.04%), Query Frame = 0


Query: 323 ESGITRHKTVTYTPQQNGVAERLNRTIMERVRCLLSNAILEEKFWVEVAAYVVYTLNRSP 382
           + GI+   +  +TP+ NG++ER +R I+E    LLS+A + + +W    +  VY +NR P
Sbjct: 585 QHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLLSHASVPKTYWPYAFSVAVYLINRLP 644

Query: 383 HTSLGFLTPEEKWSKHPPSLNDLKVFGCVGY 414
              L   +P +K    PP+   LKVFGC  Y
Sbjct: 645 TPLLQLQSPFQKLFGQPPNYEKLKVFGCACY 675

[Close]

BLAST of CSPI05G15080 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.2e-08
Identity = 32/91 (35.16%), Postives = 51/91 (56.04%), Query Frame = 0


Query: 323 ESGITRHKTVTYTPQQNGVAERLNRTIMERVRCLLSNAILEEKFWVEVAAYVVYTLNRSP 382
           + GI+   +  +TP+ NG++ER +R I+E    LLS+A + + +W    A  VY +NR P
Sbjct: 606 QHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHASIPKTYWPYAFAVAVYLINRLP 665

Query: 383 HTSLGFLTPEEKWSKHPPSLNDLKVFGCVGY 414
              L   +P +K     P+ + L+VFGC  Y
Sbjct: 666 TPLLQLESPFQKLFGTSPNYDKLRVFGCACY 696

[Close]

BLAST of CSPI05G15080 vs. ExPASy Swiss-Prot
Match: P92512 (Uncharacterized mitochondrial protein AtMg00710 OS=Arabidopsis thaliana OX=3702 GN=AtMg00710 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 5.4e-08
Identity = 27/75 (36.00%), Postives = 45/75 (60.00%), Query Frame = 0


Query: 345 LNRTIMERVRCLLSNAILEEKFWVEVAAYVVYTLNRSPHTSLGFLTPEEKWSKHPPSLND 404
           +NRTI+E+VR +L    L + F  + A   V+ +N+ P T++ F  P+E W +  P+ + 
Sbjct: 1   MNRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSY 60

Query: 405 LKVFGCVGYADQNKG 420
           L+ FGCV Y   ++G
Sbjct: 61  LRRFGCVAYIHCDEG 75

[Close]

BLAST of CSPI05G15080 vs. ExPASy TrEMBL
Match: A0A5D3DNU1 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004440 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 8.0e-63
Identity = 168/525 (32.00%), Postives = 236/525 (44.95%), Query Frame = 0


Query: 36  DKLGDENEAFVLLNSLSEAYKEVKNALKYGRDSIKTDVIISALRTRELEIHSS------- 95
           +K+ DEN+A +LLNSL E Y+EVK A+KYGRDS+   +++ AL+TR LEI          
Sbjct: 136 EKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDGELL 195

Query: 96  --------------------------------HKENHSGDGLFVKDALASTLDQANHVNP 155
                                           HKE H      +  +  ++  +AN  + 
Sbjct: 196 MARGRSEKKSWKGKERSFRSKSKGKSRKCFLCHKEGHFKKNCPLNKSREASTSEANVTDG 255

Query: 156 LGKHD----------------------------WVLDSGCTYHMTPFRAWFNTYREISRE 215
               +                            W++DSGCT+HMTP R +   ++++   
Sbjct: 256 YNSAEITDGYDSAETGYESAEVLMVSHRDIQDAWIMDSGCTFHMTPHRDFLTNFQKVDGG 315

Query: 216 SVFMGNNNESNIAGIGTVTMKLKDGTVKLLRNVRHVPHLKINLISLGMLDSLGCEYKGKC 275
            V +G+N   ++ G G+V +   DG V++L NVR+VP LK NLISLG LD  GC  K + 
Sbjct: 316 KVLLGDNGTCDVKGTGSVQIATHDGMVRILTNVRYVPKLKRNLISLGELDRSGCTIKSEN 375

Query: 276 GVFQVFMGSKLVLVGEKVNDLFIIKGVEMIEEANTVLSLNLTEAD-IWHKRLSHISQKGL 335
           GV +V  GS + L G   + L++++G  +   A  + S  +T+   +WHKRL+H+S++GL
Sbjct: 376 GVMKVTKGSLVKLRGTLRHGLYVLEGTTVSGSA-AIASGKVTDMSMLWHKRLAHVSERGL 435

Query: 336 EALSKQDILPQDICSKLQSKKTKLHQSTTHNKRNPGLHPFGSM---------GSASTPSL 395
           +ALS+Q +L      +L   +  +   +T  K   G H    +         G     S+
Sbjct: 436 QALSQQGLLGGVKNVELPFCEHCIMGKSTRVKFGKGKHTTKGILDYVHSDLWGPTKEVSM 495

Query: 396 SSSR-------------------------------------------------------- 420
             SR                                                        
Sbjct: 496 GGSRYFISIIDDFSRKVWIYPLKQKDEAFGKFLEWKKQVENQTGRKVKYLRTDNGLEFVN 555

[Close]

BLAST of CSPI05G15080 vs. ExPASy TrEMBL
Match: A0A5A7UB25 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold560G00190 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 8.0e-63
Identity = 168/525 (32.00%), Postives = 236/525 (44.95%), Query Frame = 0


Query: 36  DKLGDENEAFVLLNSLSEAYKEVKNALKYGRDSIKTDVIISALRTRELEIHSS------- 95
           +K+ DEN+A +LLNSL E Y+EVK A+KYGRDS+   +++ AL+TR LEI          
Sbjct: 136 EKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDGELL 195

Query: 96  --------------------------------HKENHSGDGLFVKDALASTLDQANHVNP 155
                                           HKE H      +  +  ++  +AN  + 
Sbjct: 196 MARGRSEKKSWKGKERSFRSKSKGKSRKCFLCHKEGHFKKNCPLNKSREASTSEANVTDG 255

Query: 156 LGKHD----------------------------WVLDSGCTYHMTPFRAWFNTYREISRE 215
               +                            W++DSGCT+HMTP R +   ++++   
Sbjct: 256 YNSAEITDGYDSAETGYESAEVLMVSHRDIQDAWIMDSGCTFHMTPHRDFLTNFQKVDGG 315

Query: 216 SVFMGNNNESNIAGIGTVTMKLKDGTVKLLRNVRHVPHLKINLISLGMLDSLGCEYKGKC 275
            V +G+N   ++ G G+V +   DG V++L NVR+VP LK NLISLG LD  GC  K + 
Sbjct: 316 KVLLGDNGTCDVKGTGSVQIATHDGMVRILTNVRYVPKLKRNLISLGELDRSGCTIKSEN 375

Query: 276 GVFQVFMGSKLVLVGEKVNDLFIIKGVEMIEEANTVLSLNLTEAD-IWHKRLSHISQKGL 335
           GV +V  GS + L G   + L++++G  +   A  + S  +T+   +WHKRL+H+S++GL
Sbjct: 376 GVMKVTKGSLVKLRGTLRHGLYVLEGTTVSGSA-AIASGKVTDMSMLWHKRLAHVSERGL 435

Query: 336 EALSKQDILPQDICSKLQSKKTKLHQSTTHNKRNPGLHPFGSM---------GSASTPSL 395
           +ALS+Q +L      +L   +  +   +T  K   G H    +         G     S+
Sbjct: 436 QALSQQGLLGGVKNVELPFCEHCIMGKSTRVKFGKGKHTTKGILDYVHSDLWGPTKEVSM 495

Query: 396 SSSR-------------------------------------------------------- 420
             SR                                                        
Sbjct: 496 GGSRYFISIIDDFSRKVWIYPLKQKDEAFGKFLEWKKQVENQTGRKVKYLRTDNGLEFVN 555

[Close]

BLAST of CSPI05G15080 vs. ExPASy TrEMBL
Match: A0A438IR25 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_2664 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 8.0e-63
Identity = 153/436 (35.09%), Postives = 226/436 (51.83%), Query Frame = 0


Query: 38  LGDENEAFVLLNSLSEAYKEVKNALKYGRDSI-----KTDVIISALRTRELEIHSSHKEN 97
           + DE++A +LL SL   Y  +K+A+ YGRDS+     K     S  +T++ +    HKE 
Sbjct: 139 ISDEDKAILLLTSLDAFYTNMKDAIMYGRDSLTFDEGKNSKSRSKSKTKKFKCFICHKEG 198

Query: 98  HSGDGLFVKD-------ALASTLDQANHVNPLGKHD---------------WVLDSGCTY 157
           H     F KD        +  T+++ +    L  +D               W+LDSGC++
Sbjct: 199 H-----FKKDCPDRRQNTIKKTVNECDAAVILDGYDSAEVLNVAEVDSGKEWILDSGCSF 258

Query: 158 HMTPFRAWFNTYREISRESVFMGNNNESNIAGIGTVTMKLKDGTVKLLRNVRHVPHLKIN 217
           HM P +AWF  ++E     V +GNN    I G GTV +K  DG  ++L +VR++P LK N
Sbjct: 259 HMCPIKAWFEDFKEADGGYVLLGNNKHCKILGTGTVRIKHYDGIERVLEDVRYIPELKRN 318

Query: 218 LISLGMLDSLGCEYKGKCGVFQVFMGSKLVLVGEKVNDLFIIKGVEMIEEANTVLSLNLT 277
           LISLGMLD  G  +K +    +V  GS  V+     N L+ + G  +I++A+TVL  ++ 
Sbjct: 319 LISLGMLDKSGYTFKSEPNSLRVARGSLTVMKETIKNGLYTLIGQTVIDKASTVLKEDVG 378

Query: 278 EADIWHKRLSHISQKGLEALSKQDILPQDICSKLQSKKTKLHQSTTHNKRNPGLHPFGSM 337
              +WH+RL H+S KGL+ L KQ +L     + L   +  +    T  K    +H   + 
Sbjct: 379 TTKLWHQRLGHMSHKGLQELEKQGVLGNYKLTDLPFCEHCVFGKATRVKFAKAIHETQNQ 438

Query: 338 ---------GSASTPSL------------------------SSSRESGITRHKTVTYTPQ 397
                    G +  PS+                        S  ++ GI  H+TV YTPQ
Sbjct: 439 LDYIHSDLWGPSRVPSIGGASRKVKKLRTDNGLEFLSNDFNSFCQKEGIATHRTVRYTPQ 498

Query: 398 QNGVAERLNRTIMERVRCLLSNAILEEKFWVEVAAYVVYTLNRSPHTSLGFLTPEEKWSK 414
           QNG+AER+NRTI+ER+RC+LS++ L + FW E A  VV+ +NRSP ++L F TP+EKW+ 
Sbjct: 499 QNGLAERMNRTILERMRCMLSSSGLSKVFWAEAADTVVHLINRSPSSALQFKTPQEKWTG 558

[Close]

BLAST of CSPI05G15080 vs. ExPASy TrEMBL
Match: A0A5A7U2U7 (Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00590 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 6.7e-62
Identity = 165/524 (31.49%), Postives = 231/524 (44.08%), Query Frame = 0


Query: 36  DKLGDENEAFVLLNSLSEAYKEVKNALKYGRDSIKTDVIISALRTRELEIHSS------- 95
           +K+ DEN+A +LLNSL E Y+EVK A+KYG DS+   +++ AL+TR LEI          
Sbjct: 136 EKMSDENQAVILLNSLPETYREVKAAIKYGWDSLTMSIVLDALKTRNLEIKKERKDGELL 195

Query: 96  --------------------------------HKENHSGDGLFVKDALASTLDQANHVNP 155
                                           HKE H      +  +  ++  +AN  + 
Sbjct: 196 MARGRSEKKSWKGKERSFRSKSKGKSRKCFLCHKEGHFKKNCPLNKSREASTSEANVTDG 255

Query: 156 LGKHD----------------------------WVLDSGCTYHMTPFRAWFNTYREISRE 215
               +                            W++DSGCT+HMTP R +   ++++   
Sbjct: 256 YNSAEITDGCDSAETGYESAEVLMVSHRDIQDAWIMDSGCTFHMTPHRDFLTNFQKVDGG 315

Query: 216 SVFMGNNNESNIAGIGTVTMKLKDGTVKLLRNVRHVPHLKINLISLGMLDSLGCEYKGKC 275
            V +G+N   ++ G G+V +   DG V++L NVR+VP LK NLISLG LD  GC  K + 
Sbjct: 316 KVLLGDNGTCDVKGTGSVQIATHDGMVRILTNVRYVPKLKRNLISLGELDRSGCTIKSEN 375

Query: 276 GVFQVFMGSKLVLVGEKVNDLFIIKGVEMIEEANTVLSLNLTEADIWHKRLSHISQKGLE 335
           GV +V  GS + L G   + L++++G  +   A          + +WHKRL+H+S++GL+
Sbjct: 376 GVMKVTKGSLVKLRGTLRHGLYVLEGTTVSGSAAIASGKVTNMSMLWHKRLAHVSERGLQ 435

Query: 336 ALSKQDILPQDICSKLQSKKTKLHQSTTHNKRNPGLHPFGSM---------GSASTPSLS 395
           ALS+Q +L      +L   +  +   +T  K   G H    +         G     S+ 
Sbjct: 436 ALSQQGLLGGVKNVELPFCEHCIMGKSTRVKFGKGKHTTKGILDYIHSDLWGPTKEVSMG 495

Query: 396 SSR--------------------------------------------------------- 420
            SR                                                         
Sbjct: 496 GSRYFISIIDDFSRKVWIYPLKQKDEAFGKFLEWKKQVENQTGRKVKYLRTDNGLEFVNN 555

[Close]

BLAST of CSPI05G15080 vs. ExPASy TrEMBL
Match: A0A5A7TP18 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G001600 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 6.7e-62
Identity = 167/525 (31.81%), Postives = 235/525 (44.76%), Query Frame = 0


Query: 36  DKLGDENEAFVLLNSLSEAYKEVKNALKYGRDSIKTDVIISALRTRELEIHSS------- 95
           +K+ DEN+A +LLNSL E Y+EVK A+KYGRDS+   +++ AL+TR LEI          
Sbjct: 26  EKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDGELL 85

Query: 96  --------------------------------HKENHSGDGLFVKDALASTLDQANHVNP 155
                                           HKE H      +  +  ++  +AN  + 
Sbjct: 86  MARGRSEKKSWKGKERSFRSKSKGKSRKCFLCHKEGHFKKNCPLNKSREASTSEANVTDG 145

Query: 156 LGKHD----------------------------WVLDSGCTYHMTPFRAWFNTYREISRE 215
               +                            W++DSGCT+HMTP R +   ++++   
Sbjct: 146 YNSAEITNGYDSAETGYESAEVLMVSHRDIQDAWIMDSGCTFHMTPHRDFLTNFQKVDGG 205

Query: 216 SVFMGNNNESNIAGIGTVTMKLKDGTVKLLRNVRHVPHLKINLISLGMLDSLGCEYKGKC 275
            V +G+N   ++ G G+V +   DG V++L NV +VP LK NLISLG LD  GC  K + 
Sbjct: 206 KVLLGDNGTCDVKGTGSVQIATHDGMVRILTNVLYVPKLKRNLISLGELDRSGCTIKSEN 265

Query: 276 GVFQVFMGSKLVLVGEKVNDLFIIKGVEMIEEANTVLSLNLTEAD-IWHKRLSHISQKGL 335
           GV +V  GS + L G   + L++++G  +   A  + S  +T+   +WHKRL+H+S++GL
Sbjct: 266 GVMKVTKGSLVKLKGTLRHGLYVLEGTTVSGSA-AIASGKVTDMSMLWHKRLAHVSERGL 325

Query: 336 EALSKQDILPQDICSKLQSKKTKLHQSTTHNKRNPGLHPFGSM---------GSASTPSL 395
           +ALS+Q +L      +L   +  +   +T  K   G H    +         G     S+
Sbjct: 326 QALSQQGLLGGVKNVELPFCEHCIMGKSTRVKFGKGKHITKGILDYVHSDLWGPTKEVSM 385

Query: 396 SSSR-------------------------------------------------------- 420
             SR                                                        
Sbjct: 386 GGSRYFISIIDDFSRKVWIYPLKQKDEAFGKFLEWKKQVENQTGRKVKYLRTDNGLEFVN 445

[Close]

BLAST of CSPI05G15080 vs. NCBI nr
Match: XP_038880322.1 (uncharacterized protein LOC120071961 [Benincasa hispida])

HSP 1 Score: 288.5 bits (737), Expect = 9.3e-74
Identity = 172/401 (42.89%), Postives = 221/401 (55.11%), Query Frame = 0


Query: 23  KIKALLGQQKTHKDKLGDENEAFVLLNSLSEAYKEVKNALKYGRDSIKTDVIISALRTRE 82
           + K ++ + K+  +K+GDENEAFVLLNSL E YKEVKNALKYGR+S+  D IISALRTRE
Sbjct: 13  EFKRIVYEFKSLSEKIGDENEAFVLLNSLPETYKEVKNALKYGRESVTIDAIISALRTRE 72

Query: 83  LEIHSSHKENHSGDGLFVKDALASTLDQANHVNPLGKHDWVLDSGCTYHMTPFRAWFNTY 142
           LE+ S  KE    +G                                      + WF+TY
Sbjct: 73  LELQSIKKEQPGAEG--------------------------------------KLWFSTY 132

Query: 143 REISRESVFMGNNNESNIAGIGTVTMKLKDGTVKLLRNVRHVPHLKINLISLGMLDSLGC 202
           +++  ESV+MGNN    I G+G+                                     
Sbjct: 133 KDVDGESVYMGNNEVIKIKGVGSC------------------------------------ 192

Query: 203 EYKGKCGVFQVFMGSKLVLVGEKVNDLFIIKGVEMIEEANTVLSLNLTEADIWHKRLSHI 262
             +GK G+ +V   SK+VLVGE+VNDL+I++GVEM+  A TV + +LTEAD+WHKRLSHI
Sbjct: 193 --RGKDGILEVIKDSKVVLVGERVNDLYIVRGVEMMTSAYTVSTTSLTEADLWHKRLSHI 252

Query: 263 SQKGLEALSKQDILPQDICSKLQSKKTKLHQSTTHNKRNPGLHPFGSMGSASTPSLSSSR 322
           S+KG      +  L ++ C   ++ +    +S    K       F   G + TPSLS SR
Sbjct: 253 SEKGC-----KHCLNKEYCILGKATRQSFTKSQHTTKETLDYVYFDLWGPSPTPSLSGSR 312

Query: 323 -----------------ESGITRHKTVTYTPQQNGVAERLNRTIMERVRCLLSNAILEEK 382
                            E GI+R +TV YTPQQNGVAERLN TIME VRCLLS+AIL E 
Sbjct: 313 TNNGLEFCNEDFDKYCSEDGISRCRTVRYTPQQNGVAERLNGTIMEMVRCLLSDAILSEN 332

Query: 383 FWVEVAAYVVYTLNRSPHTSLGFLTPEEKWSKHPPSLNDLK 407
           +W E  AY+VYTLNR PHTSL  LTPEE W+ HPP+L++LK
Sbjct: 373 YWAEAVAYIVYTLNRCPHTSLELLTPEEMWTNHPPNLDNLK 332

[Close]

BLAST of CSPI05G15080 vs. NCBI nr
Match: XP_038904504.1 (uncharacterized protein LOC120090876 [Benincasa hispida])

HSP 1 Score: 285.4 bits (729), Expect = 7.9e-73
Identity = 184/464 (39.66%), Postives = 228/464 (49.14%), Query Frame = 0


Query: 1   MAITRVEIEKFDGNGDFVLWKAKIKALLGQQKTHK------------------------- 60
           M++ R E++KFD  GDF LWKAKIKA+L QQK  +                         
Sbjct: 1   MSVARFEVKKFDSKGDFGLWKAKIKAILDQQKARRALFDPSTLPALVKAQEKEDWELVAY 60

Query: 61  --------------DKLGDENEAFVLLNSLSEAYKEVKNALKYGRDSIKTDVIISALRTR 120
                         +KLGDENEA+VLLNSL E Y+E+KNALKY RD+I TD IISALRTR
Sbjct: 61  DEFKKIFVAFKTLGEKLGDENEAYVLLNSLPEPYREIKNALKYRRDNISTDTIISALRTR 120

Query: 121 ELEIHSSHKENHSGDGLFVKDALASTLDQANHVNPLGKHDWVLDSGCTYHMTPFRAWFNT 180
           EL   +  K+  SG+G                                            
Sbjct: 121 ELV--TDKKDYPSGEG-------------------------------------------- 180

Query: 181 YREISRESVFMGNNNESNIAGIGTVTMKLKDGTVKLLRNVRHVPHLKINLISLGMLDSLG 240
                                                 NVR+VP LK NLISLGMLD++G
Sbjct: 181 --------------------------------------NVRYVPLLKRNLISLGMLDAIG 240

Query: 241 CEYKGKCGVFQVFMGSKLVLVGEKVNDLFIIKGVEMIEEANTVLSLNLTEADIWHKRLSH 300
           CEYKG                                  A    +  +TEAD+WHKRLSH
Sbjct: 241 CEYKG----------------------------------AYVATTNEITEADVWHKRLSH 300

Query: 301 ISQKGLEALSKQDILPQDICSKLQSKKTKLHQSTTHNKRNP------GLHPFGSMGSAST 360
           IS KGLE LSKQ ILP+   ++    K    Q TT    +       GL P  S+  +S 
Sbjct: 301 ISAKGLEVLSKQGILPKGKTTRQSFTKA---QHTTKAILDYIHLDLWGLAPIPSLSGSSE 343

Query: 361 PSLSSSRESGITRHKTVTYTPQQNGVAERLNRTIMERVRCLLSNAILEEKFWVEVAAYVV 420
                 +E+ ITRH+T+ +T Q+NGVAERLNRTIMERVRCLLS+A L EK+W E A+Y +
Sbjct: 361 EFNKFCKETSITRHRTIRFTSQRNGVAERLNRTIMERVRCLLSDANLREKYWAEAASYTI 343

[Close]

BLAST of CSPI05G15080 vs. NCBI nr
Match: KAG8480261.1 (hypothetical protein CXB51_024850 [Gossypium anomalum])

HSP 1 Score: 252.3 bits (643), Expect = 7.4e-63
Identity = 157/459 (34.20%), Postives = 233/459 (50.76%), Query Frame = 0


Query: 25  KALLGQQKTHKDKLGDENEAFVLLNSLSEAYKEVKNALKYGRDSIKTDVIISALRTRELE 84
           K +L   +  + +   E+   +LL SL  +Y   ++ + Y R+S+  D +  +L + +  
Sbjct: 96  KEILSNLEAMEVQYDKEDLGLILLCSLPPSYSTFRDTILYSRESLTVDEVYDSLTSYDKM 155

Query: 85  IHSSHKENHSGDGLFVKDALASTLDQANHVNPLGK------------HDWVLDSGCTYHM 144
            H   K +  G+GL V+       D        G+             +W+LDSGCT+HM
Sbjct: 156 KHLVVKPDSQGEGLIVRGRQDRNTDDDREDYSDGELLVASVNDSKVSEEWILDSGCTFHM 215

Query: 145 TPFRAWFNTYREISRESVFMGNNNESNIAGIGTVTMKLKDGTVKLLRNVRHVPHLKINLI 204
           +P R WF TY  +S   V MGNN    IAG+GT+ +K+ DG V+ L +VR+VP LK NLI
Sbjct: 216 SPNRDWFTTYETVSEGVVLMGNNASCKIAGVGTIKVKMFDGVVRTLSDVRYVPELKRNLI 275

Query: 205 SLGMLDSLGCEYKGKCGVFQVFMGSKLVLVGE-KVNDLFIIKGVEMIEEANTVLSLNLTE 264
           SL  LDS G  Y  + GV ++  GS +V+ G+ K   L++++G  +  +A  V S +L++
Sbjct: 276 SLSTLDSKGYRYTAESGVLKISKGSLVVMKGQRKTAKLYVLQGSTVTGDA-AVASSSLSD 335

Query: 265 ADI---WHKRLSHISQKGLEALSKQDILP-QDICSKL---------QSKKTKLHQSTTHN 324
            DI   WH RL H+S+ G+  LSK+ +L  Q IC KL         + K+ +  +   + 
Sbjct: 336 DDITKLWHMRLGHMSENGMVELSKRGLLDGQGIC-KLNFCEHCVFGKQKRVRFTRGIHNT 395

Query: 325 KRNPGLHPFGSMGSASTPSLSSS------------------------------------- 384
           K           G +  PS   +                                     
Sbjct: 396 KETLEYIHSDLWGPSRVPSRGGANYMLTFIDDFSRKTGKQIKYLRTDNGLEFCSDEFNRL 455

Query: 385 -RESGITRHKTVTYTPQQNGVAERLNRTIMERVRCLLSNAILEEKFWVEVAAYVVYTLNR 420
            +  GI R+ TV +TPQQNGVAER+NRTIME+VRC+LSNA L + FW E A+   + +NR
Sbjct: 456 CKSEGIVRYLTVRHTPQQNGVAERMNRTIMEKVRCMLSNANLPKSFWAEAASTACFLINR 515

[Close]

BLAST of CSPI05G15080 vs. NCBI nr
Match: TYK25306.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 251.1 bits (640), Expect = 1.6e-62
Identity = 168/525 (32.00%), Postives = 236/525 (44.95%), Query Frame = 0


Query: 36  DKLGDENEAFVLLNSLSEAYKEVKNALKYGRDSIKTDVIISALRTRELEIHSS------- 95
           +K+ DEN+A +LLNSL E Y+EVK A+KYGRDS+   +++ AL+TR LEI          
Sbjct: 136 EKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDGELL 195

Query: 96  --------------------------------HKENHSGDGLFVKDALASTLDQANHVNP 155
                                           HKE H      +  +  ++  +AN  + 
Sbjct: 196 MARGRSEKKSWKGKERSFRSKSKGKSRKCFLCHKEGHFKKNCPLNKSREASTSEANVTDG 255

Query: 156 LGKHD----------------------------WVLDSGCTYHMTPFRAWFNTYREISRE 215
               +                            W++DSGCT+HMTP R +   ++++   
Sbjct: 256 YNSAEITDGYDSAETGYESAEVLMVSHRDIQDAWIMDSGCTFHMTPHRDFLTNFQKVDGG 315

Query: 216 SVFMGNNNESNIAGIGTVTMKLKDGTVKLLRNVRHVPHLKINLISLGMLDSLGCEYKGKC 275
            V +G+N   ++ G G+V +   DG V++L NVR+VP LK NLISLG LD  GC  K + 
Sbjct: 316 KVLLGDNGTCDVKGTGSVQIATHDGMVRILTNVRYVPKLKRNLISLGELDRSGCTIKSEN 375

Query: 276 GVFQVFMGSKLVLVGEKVNDLFIIKGVEMIEEANTVLSLNLTEAD-IWHKRLSHISQKGL 335
           GV +V  GS + L G   + L++++G  +   A  + S  +T+   +WHKRL+H+S++GL
Sbjct: 376 GVMKVTKGSLVKLRGTLRHGLYVLEGTTVSGSA-AIASGKVTDMSMLWHKRLAHVSERGL 435

Query: 336 EALSKQDILPQDICSKLQSKKTKLHQSTTHNKRNPGLHPFGSM---------GSASTPSL 395
           +ALS+Q +L      +L   +  +   +T  K   G H    +         G     S+
Sbjct: 436 QALSQQGLLGGVKNVELPFCEHCIMGKSTRVKFGKGKHTTKGILDYVHSDLWGPTKEVSM 495

Query: 396 SSSR-------------------------------------------------------- 420
             SR                                                        
Sbjct: 496 GGSRYFISIIDDFSRKVWIYPLKQKDEAFGKFLEWKKQVENQTGRKVKYLRTDNGLEFVN 555

[Close]

BLAST of CSPI05G15080 vs. NCBI nr
Match: RVW99173.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 251.1 bits (640), Expect = 1.6e-62
Identity = 153/436 (35.09%), Postives = 226/436 (51.83%), Query Frame = 0


Query: 38  LGDENEAFVLLNSLSEAYKEVKNALKYGRDSI-----KTDVIISALRTRELEIHSSHKEN 97
           + DE++A +LL SL   Y  +K+A+ YGRDS+     K     S  +T++ +    HKE 
Sbjct: 139 ISDEDKAILLLTSLDAFYTNMKDAIMYGRDSLTFDEGKNSKSRSKSKTKKFKCFICHKEG 198

Query: 98  HSGDGLFVKD-------ALASTLDQANHVNPLGKHD---------------WVLDSGCTY 157
           H     F KD        +  T+++ +    L  +D               W+LDSGC++
Sbjct: 199 H-----FKKDCPDRRQNTIKKTVNECDAAVILDGYDSAEVLNVAEVDSGKEWILDSGCSF 258

Query: 158 HMTPFRAWFNTYREISRESVFMGNNNESNIAGIGTVTMKLKDGTVKLLRNVRHVPHLKIN 217
           HM P +AWF  ++E     V +GNN    I G GTV +K  DG  ++L +VR++P LK N
Sbjct: 259 HMCPIKAWFEDFKEADGGYVLLGNNKHCKILGTGTVRIKHYDGIERVLEDVRYIPELKRN 318

Query: 218 LISLGMLDSLGCEYKGKCGVFQVFMGSKLVLVGEKVNDLFIIKGVEMIEEANTVLSLNLT 277
           LISLGMLD  G  +K +    +V  GS  V+     N L+ + G  +I++A+TVL  ++ 
Sbjct: 319 LISLGMLDKSGYTFKSEPNSLRVARGSLTVMKETIKNGLYTLIGQTVIDKASTVLKEDVG 378

Query: 278 EADIWHKRLSHISQKGLEALSKQDILPQDICSKLQSKKTKLHQSTTHNKRNPGLHPFGSM 337
              +WH+RL H+S KGL+ L KQ +L     + L   +  +    T  K    +H   + 
Sbjct: 379 TTKLWHQRLGHMSHKGLQELEKQGVLGNYKLTDLPFCEHCVFGKATRVKFAKAIHETQNQ 438

Query: 338 ---------GSASTPSL------------------------SSSRESGITRHKTVTYTPQ 397
                    G +  PS+                        S  ++ GI  H+TV YTPQ
Sbjct: 439 LDYIHSDLWGPSRVPSIGGASRKVKKLRTDNGLEFLSNDFNSFCQKEGIATHRTVRYTPQ 498

Query: 398 QNGVAERLNRTIMERVRCLLSNAILEEKFWVEVAAYVVYTLNRSPHTSLGFLTPEEKWSK 414
           QNG+AER+NRTI+ER+RC+LS++ L + FW E A  VV+ +NRSP ++L F TP+EKW+ 
Sbjct: 499 QNGLAERMNRTILERMRCMLSSSGLSKVFWAEAADTVVHLINRSPSSALQFKTPQEKWTG 558

[Close]

BLAST of CSPI05G15080 vs. TAIR 10
Match: ATMG00710.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 60.5 bits (145), Expect = 3.8e-09
Identity = 27/75 (36.00%), Postives = 45/75 (60.00%), Query Frame = 0


Query: 345 LNRTIMERVRCLLSNAILEEKFWVEVAAYVVYTLNRSPHTSLGFLTPEEKWSKHPPSLND 404
           +NRTI+E+VR +L    L + F  + A   V+ +N+ P T++ F  P+E W +  P+ + 
Sbjct: 1   MNRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSY 60

Query: 405 LKVFGCVGYADQNKG 420
           L+ FGCV Y   ++G
Sbjct: 61  LRRFGCVAYIHCDEG 75

[Close]

BLAST of CSPI05G15080 vs. TAIR 10
Match: ATMG00300.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 48.9 bits (115), Expect = 1.2e-05
Identity = 29/97 (29.90%), Postives = 50/97 (51.55%), Query Frame = 0


Query: 209 GVFQVFMGSKLVLVGEKVNDLFIIKGVEMIEEANTVLSLNLTEADIWHKRLSHISQKGLE 268
           GV +V  G + +L G + + L+I++G     E+N   +    E  +WH RL+H+SQ+G+E
Sbjct: 27  GVLKVLKGCRTILKGNRHDSLYILQGSVETGESNLAETAK-DETRLWHSRLAHMSQRGME 86

Query: 269 ALSKQDILPQDICSKLQSKKTKLHQSTTHNKRNPGLH 306
            L K+  L     S L+  +  ++  T     + G H
Sbjct: 87  LLVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQH 122

[Close]

BLAST of CSPI05G15080 vs. TAIR 10
Match: AT3G21000.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 45.1 bits (105), Expect = 1.7e-04
Identity = 23/78 (29.49%), Postives = 40/78 (51.28%), Query Frame = 0


Query: 122 WVLDSGCTYHMTPFRAWFNTYREISRESVFMGNNNESNIAGIGTVTMKLKDGTVKLLRNV 181
           W++      +MTP+  +F T     + +V   +     + G G V +++K+G  K +RNV
Sbjct: 280 WIIHKMAPINMTPYVKYFTTLDRTFKATVGTVDGTVLLVEGKGDVKIRMKEGKKKTIRNV 339

Query: 182 RHVPHLKINLISLGMLDS 200
             VP L  N++S G + S
Sbjct: 340 IFVPGLNRNVLSFGKMVS 357

The following BLAST results are available for this feature:

BLAST of CSPI05G15080 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	8.3e-33	29.97	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	3.3e-13	43.01	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	1.7e-09	36.26	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	3.2e-08	35.16	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P92512	5.4e-08	36.00	Uncharacterized mitochondrial protein AtMg00710 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of CSPI05G15080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DNU1	8.0e-63	32.00	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5A7UB25	8.0e-63	32.00	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A438IR25	8.0e-63	35.09	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A5A7U2U7	6.7e-62	31.49	Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. maku...	[more]
A0A5A7TP18	6.7e-62	31.81	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]

BLAST of CSPI05G15080 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038880322.1	9.3e-74	42.89	uncharacterized protein LOC120071961 [Benincasa hispida]	[more]
XP_038904504.1	7.9e-73	39.66	uncharacterized protein LOC120090876 [Benincasa hispida]	[more]
KAG8480261.1	7.4e-63	34.20	hypothetical protein CXB51_024850 [Gossypium anomalum]	[more]
TYK25306.1	1.6e-62	32.00	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
RVW99173.1	1.6e-62	35.09	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]

BLAST of CSPI05G15080 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00710.1	3.8e-09	36.00	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
ATMG00300.1	1.2e-05	29.90	Gag-Pol-related retrotransposon family protein	[more]
AT3G21000.1	1.7e-04	29.49	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 229..278 e-value: 4.8E-8 score: 32.7
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 318..407 e-value: 1.9E-19 score: 71.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 291..330
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 296..330
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 181..399 score: 12.002811
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 322..407

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G15080.1	CSPI05G15080.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding