CSPI05G12740 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI05G12740
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrotransposon protein, putative, unclassified
LocationChr5: 12049429 .. 12049932 (-)
RNA-Seq ExpressionCSPI05G12740
SyntenyCSPI05G12740
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACAAAGGGCACAGATTTTGTGGTACCGATCGAGGAAGACGGCGAGGACGTGGTCGTGGCCGTGGTCGTGGCACTGAGCGTCAAAGTAATGCGGGAGGCACTAGCAACACTGGAAATGGCACTCGTGATAAAAGTCACAGTAAATGTTTGGGCAACAAGATGAGACATTACGCGTCGGAATGTCGTGGAAAAGGTCATGACGACGAAGCTCATCTAACTTGTGTCGCCGAAGAAGAACCGACTTTGATGATGGTCGTGTCCCAGGAGGGGACACGCATTAGATGTGATCAGGAGGATGTCATACTACTCAACAAAGAGCGGTTGTTGCTAGAGATGTATTGCAACGACAAGAATGGAGAAAATACTGATGTTTGGTATCTTGACAACGGTGCTAGTAACCACATGACTAGCCATCGTGAGAAGTTCCAAGAATTAGATGAAAGCTTCACTGGGAGGGTGAAGTTTGGCGATGGATCAACCATTCAGATCATGGAAAAATGA

mRNA sequence

ATGAACAAAGGGCACAGATTTTGTGGTACCGATCGAGGAAGACGGCGAGGACGTGGTCGTGGCCGTGGTCGTGGCACTGAGCGTCAAAGTAATGCGGGAGGCACTAGCAACACTGGAAATGGCACTCGTGATAAAAGTCACAGTAAATGTTTGGGCAACAAGATGAGACATTACGCGTCGGAATGTCGTGGAAAAGGTCATGACGACGAAGCTCATCTAACTTGTGTCGCCGAAGAAGAACCGACTTTGATGATGGTCGTGTCCCAGGAGGGGACACGCATTAGATGTGATCAGGAGGATGTCATACTACTCAACAAAGAGCGGTTGTTGCTAGAGATGTATTGCAACGACAAGAATGGAGAAAATACTGATGTTTGGTATCTTGACAACGGTGCTAGTAACCACATGACTAGCCATCGTGAGAAGTTCCAAGAATTAGATGAAAGCTTCACTGGGAGGGTGAAGTTTGGCGATGGATCAACCATTCAGATCATGGAAAAATGA

Coding sequence (CDS)

ATGAACAAAGGGCACAGATTTTGTGGTACCGATCGAGGAAGACGGCGAGGACGTGGTCGTGGCCGTGGTCGTGGCACTGAGCGTCAAAGTAATGCGGGAGGCACTAGCAACACTGGAAATGGCACTCGTGATAAAAGTCACAGTAAATGTTTGGGCAACAAGATGAGACATTACGCGTCGGAATGTCGTGGAAAAGGTCATGACGACGAAGCTCATCTAACTTGTGTCGCCGAAGAAGAACCGACTTTGATGATGGTCGTGTCCCAGGAGGGGACACGCATTAGATGTGATCAGGAGGATGTCATACTACTCAACAAAGAGCGGTTGTTGCTAGAGATGTATTGCAACGACAAGAATGGAGAAAATACTGATGTTTGGTATCTTGACAACGGTGCTAGTAACCACATGACTAGCCATCGTGAGAAGTTCCAAGAATTAGATGAAAGCTTCACTGGGAGGGTGAAGTTTGGCGATGGATCAACCATTCAGATCATGGAAAAATGA

Protein sequence

MNKGHRFCGTDRGRRRGRGRGRGRGTERQSNAGGTSNTGNGTRDKSHSKCLGNKMRHYASECRGKGHDDEAHLTCVAEEEPTLMMVVSQEGTRIRCDQEDVILLNKERLLLEMYCNDKNGENTDVWYLDNGASNHMTSHREKFQELDESFTGRVKFGDGSTIQIMEK*
Homology
BLAST of CSPI05G12740 vs. ExPASy TrEMBL
Match: A0A5A7SIJ0 (Keratin, type I cytoskeletal 9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G00200 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 2.1e-35
Identity = 91/152 (59.87%), Postives = 108/152 (71.05%), Query Frame = 0

Query: 17  GRGRGRGRGTERQSNAGGTSNTGNGTRDKSHSKCLG-NKMRHYASECRGKGHDDEAHLTC 76
           G   G  RGT+ Q+ AGGTSNT NGTRDKSH KC   NKM+HY +EC  KG DD AHLT 
Sbjct: 19  GCSHGCDRGTKPQNCAGGTSNTDNGTRDKSHIKCFTCNKMKHYTTECHEKGRDDGAHLTR 78

Query: 77  VAEEEPTLMMVVSQEGTRIRCDQEDVILLNKERLLLEMYCNDKNGENTDVWYLDNGASNH 136
             ++EP LM+     GT I  D+   +LL+KE+LL ++Y N+KN EN  VWYL+NGASNH
Sbjct: 79  ATDKEPALMI-----GTCIGRDRVGGVLLSKEQLLPKIYYNNKNEENKGVWYLNNGASNH 138

Query: 137 MTSHREKFQELDESFTGRVKFGDGSTIQIMEK 168
           MT+H EK QELD S TGRVKF + STIQIM K
Sbjct: 139 MTNHHEKLQELDGSVTGRVKFLNESTIQIMGK 165

BLAST of CSPI05G12740 vs. ExPASy TrEMBL
Match: A0A5K0VFR7 (Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS1129 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 2.2e-24
Identity = 77/179 (43.02%), Postives = 107/179 (59.78%), Query Frame = 0

Query: 4   GHRFCGT----DRGRRRGRGRGRGRG----TERQSNAGGTSNTGNGTRDKSHSKCLG-NK 63
           GHR  G      RGR RGRGRG GRG     +R S +GG        RD+SH +C   N+
Sbjct: 280 GHREGGVRSRGGRGRDRGRGRG-GRGDFPLKDRASGSGGDG------RDRSHIRCFNCNE 339

Query: 64  MRHYASECRGKGHDDEAHLTCVAEEEPTLMMVVSQEGTRIR------CDQEDVILLNKER 123
           + HYA  C+     +EAHLT   + EPTL++   +E            ++++ +LLN+E+
Sbjct: 340 LGHYADRCKAPKKKEEAHLTQTDDTEPTLLLAELEEAMPAAPEKQEWQERQEAVLLNEEQ 399

Query: 124 LLLEMYCNDKNGENTDVWYLDNGASNHMTSHREKFQELDESFTGRVKFGDGSTIQIMEK 168
           +  E++  +   E TD WYLDNGA+NHMT  + KF+EL+E+ TG VKFGDGS++QIM K
Sbjct: 400 VWPELHGTEHGKETTDTWYLDNGANNHMTGDKVKFRELNEAITGNVKFGDGSSVQIMGK 451

BLAST of CSPI05G12740 vs. ExPASy TrEMBL
Match: A0A251U1A0 (Putative zinc finger, CCHC-type OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr09g0272931 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.1e-23
Identity = 76/165 (46.06%), Postives = 102/165 (61.82%), Query Frame = 0

Query: 9   GTDRGRRRGRGRGRGRGTERQSNAGGTSNTGNGT----RDKSHSKCLG-NKMRHYASECR 68
           G   G R GRG GRGRG     N G   + GN +    RDKSH KC   N+  HYASEC+
Sbjct: 250 GGRSGSRGGRGSGRGRGGR---NGGKNYHEGNSSYRKPRDKSHVKCFECNQYGHYASECK 309

Query: 69  G-KGHDDEAHLTCVAEEEPTLMMVVSQEGTRIRCDQEDVILLNKERLLLEMYCNDKNGEN 128
             K  D E HLT   E+EPTL++ V  E      + + ++LLN+E++  +++   +NG N
Sbjct: 310 NEKKQDPEVHLTRETEDEPTLLLSVCGE------EAQKMVLLNEEKVFPKLH-ERRNGSN 369

Query: 129 TDVWYLDNGASNHMTSHREKFQELDESFTGRVKFGDGSTIQIMEK 168
            D WYLDNGASNHMT  ++ F EL+E+ TG+V+FGDGS ++I  K
Sbjct: 370 EDTWYLDNGASNHMTGRKDAFAELNEAVTGQVRFGDGSKVEIRGK 404

BLAST of CSPI05G12740 vs. ExPASy TrEMBL
Match: Q10F84 (Gag-pol polyprotein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0092M19.11 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.8e-21
Identity = 70/162 (43.21%), Postives = 100/162 (61.73%), Query Frame = 0

Query: 9   GTDRGRRRGRGRGRGRGTERQSNAGGTSNTGNGTRDKSHSKCLG-NKMRHYASEC-RGKG 68
           G +RG + GRGRGRGRG     ++GG S  G+G RDKSH KC    +  HY+++C   K 
Sbjct: 195 GANRG-QAGRGRGRGRGRGGTQSSGGGSGGGSGGRDKSHIKCFNCEEFGHYSTQCPHPKK 254

Query: 69  HDDEAHLTCVAEEEPTLMMVVSQE-GTRIRCDQEDVILLNKERLLLEMYCNDKNGENTDV 128
              EAHL    +  PTL++ V++      R D    +++++ER+   +   +K     D+
Sbjct: 255 KKAEAHLAQTEDAGPTLLLAVTEAVQNASRQDALCGLVVHEERVWPRLMLAEKGAAAGDL 314

Query: 129 WYLDNGASNHMTSHREKFQELDESFTGRVKFGDGSTIQIMEK 168
           WYLDNGASNHM+    KF+ELDE+ TG+V+FGD S++QIM K
Sbjct: 315 WYLDNGASNHMSGDHRKFRELDETVTGQVRFGDASSVQIMGK 355

BLAST of CSPI05G12740 vs. ExPASy TrEMBL
Match: Q84SW8 (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os03g47410 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.8e-21
Identity = 70/162 (43.21%), Postives = 100/162 (61.73%), Query Frame = 0

Query: 9   GTDRGRRRGRGRGRGRGTERQSNAGGTSNTGNGTRDKSHSKCLG-NKMRHYASEC-RGKG 68
           G +RG + GRGRGRGRG     ++GG S  G+G RDKSH KC    +  HY+++C   K 
Sbjct: 195 GANRG-QAGRGRGRGRGRGGTQSSGGGSGGGSGGRDKSHIKCFNCEEFGHYSTQCPHPKK 254

Query: 69  HDDEAHLTCVAEEEPTLMMVVSQE-GTRIRCDQEDVILLNKERLLLEMYCNDKNGENTDV 128
              EAHL    +  PTL++ V++      R D    +++++ER+   +   +K     D+
Sbjct: 255 KKAEAHLAQTEDAGPTLLLAVTEAVQNASRQDALCGLVVHEERVWPRLMLAEKGAAAGDL 314

Query: 129 WYLDNGASNHMTSHREKFQELDESFTGRVKFGDGSTIQIMEK 168
           WYLDNGASNHM+    KF+ELDE+ TG+V+FGD S++QIM K
Sbjct: 315 WYLDNGASNHMSGDHRKFRELDETVTGQVRFGDASSVQIMGK 355

BLAST of CSPI05G12740 vs. NCBI nr
Match: XP_031741713.1 (uncharacterized protein LOC116403908 [Cucumis sativus])

HSP 1 Score: 268.9 bits (686), Expect = 3.0e-68
Identity = 138/168 (82.14%), Postives = 144/168 (85.71%), Query Frame = 0

Query: 1   MNKGHRFCGTDRGRRRGRGRGRGRGTERQSNAGGTSNTGNGTRDKSHSKCLG-NKMRHYA 60
           MNKG RF G D    RGR RGRGRGTERQ++AGGTSNTGNGTRDKSH KC   NKM HYA
Sbjct: 216 MNKGRRFSGID----RGRWRGRGRGTERQNSAGGTSNTGNGTRDKSHIKCFTCNKMGHYA 275

Query: 61  SECRGKGHDDEAHLTCVAEEEPTLMMVVSQEGTRIRCDQEDVILLNKERLLLEMYCNDKN 120
            E RGKGHD+E+HLTCV EEEPTLMM +SQEGTR RCDQED ILLNKERLL EMYCNDKN
Sbjct: 276 LEYRGKGHDEESHLTCVVEEEPTLMMAMSQEGTRTRCDQEDAILLNKERLLPEMYCNDKN 335

Query: 121 GENTDVWYLDNGASNHMTSHREKFQELDESFTGRVKFGDGSTIQIMEK 168
           GEN DVWYLDNGASNHM  HREKFQELDESFTG+VKFGDG TIQIMEK
Sbjct: 336 GENNDVWYLDNGASNHMIGHREKFQELDESFTGKVKFGDGPTIQIMEK 379

BLAST of CSPI05G12740 vs. NCBI nr
Match: XP_031741744.1 (uncharacterized protein LOC116403940 [Cucumis sativus])

HSP 1 Score: 263.5 bits (672), Expect = 1.3e-66
Identity = 136/168 (80.95%), Postives = 143/168 (85.12%), Query Frame = 0

Query: 1   MNKGHRFCGTDRGRRRGRGRGRGRGTERQSNAGGTSNTGNGTRDKSHSKCLG-NKMRHYA 60
           MNKG  F GTD    RGR RGRGRGTERQ++AGGT+NTGNGTRDKSH KC   NKM HYA
Sbjct: 127 MNKGRGFSGTD----RGRWRGRGRGTERQNSAGGTTNTGNGTRDKSHIKCFTCNKMGHYA 186

Query: 61  SECRGKGHDDEAHLTCVAEEEPTLMMVVSQEGTRIRCDQEDVILLNKERLLLEMYCNDKN 120
           SEC GKG DDEAHLTCV EEEP+LMM +SQEGTR RCDQED ILL+KERLL EMYCND N
Sbjct: 187 SECCGKGRDDEAHLTCVVEEEPSLMMAMSQEGTRTRCDQEDAILLSKERLLPEMYCNDNN 246

Query: 121 GENTDVWYLDNGASNHMTSHREKFQELDESFTGRVKFGDGSTIQIMEK 168
           GEN DVWYLDNGASNH+T HREKFQELDESFTGRVKFGDGSTIQI  K
Sbjct: 247 GENNDVWYLDNGASNHITGHREKFQELDESFTGRVKFGDGSTIQIHGK 290

BLAST of CSPI05G12740 vs. NCBI nr
Match: XP_031745073.1 (uncharacterized protein LOC116405251 [Cucumis sativus])

HSP 1 Score: 246.5 bits (628), Expect = 1.6e-61
Identity = 127/159 (79.87%), Postives = 134/159 (84.28%), Query Frame = 0

Query: 1   MNKGHRFCGTDRGRRRGRGRGRGRGTERQSNAGGTSNTGNGTRDKSHSKCLG-NKMRHYA 60
           M KG  F GTD    RGR RGRGRGTERQ++AGGTSNTGNGTRDKSH KC   NKM HYA
Sbjct: 229 MTKGREFGGTD----RGRWRGRGRGTERQNSAGGTSNTGNGTRDKSHIKCFTCNKMGHYA 288

Query: 61  SECRGKGHDDEAHLTCVAEEEPTLMMVVSQEGTRIRCDQEDVILLNKERLLLEMYCNDKN 120
           SECRGKG D+EAHLTC  EEEPTLMM +SQEGTR  CDQED ILL+KERLL EMYCN+KN
Sbjct: 289 SECRGKGRDEEAHLTCAVEEEPTLMMAMSQEGTRTICDQEDAILLSKERLLPEMYCNNKN 348

Query: 121 GENTDVWYLDNGASNHMTSHREKFQELDESFTGRVKFGD 159
           GEN DVWYLDNGASNHM  HR+KFQELDESFTGRVKFGD
Sbjct: 349 GENNDVWYLDNGASNHMAGHRKKFQELDESFTGRVKFGD 383

BLAST of CSPI05G12740 vs. NCBI nr
Match: XP_031741708.1 (uncharacterized protein LOC116403903 [Cucumis sativus])

HSP 1 Score: 243.4 bits (620), Expect = 1.4e-60
Identity = 131/168 (77.98%), Postives = 135/168 (80.36%), Query Frame = 0

Query: 1   MNKGHRFCGTDRGRRRGRGRGRGRGTERQSNAGGTSNTGNGTRDKSHSKCLG-NKMRHYA 60
           MNKG  F GTD    RGR RGRGRGTE Q++AGGTSNT NGTRDKS  KC   NKMRHYA
Sbjct: 1   MNKGCGFGGTD----RGRWRGRGRGTEHQNSAGGTSNTRNGTRDKSQIKCFTCNKMRHYA 60

Query: 61  SECRGKGHDDEAHLTCVAEEEPTLMMVVSQEGTRIRCDQEDVILLNKERLLLEMYCNDKN 120
           SECRGKG DDEAHLTCV EEE   MMVVSQEGT  RCDQE+ ILL KERLL EMY NDKN
Sbjct: 61  SECRGKGRDDEAHLTCVTEEELASMMVVSQEGTHTRCDQENAILLRKERLLPEMYYNDKN 120

Query: 121 GENTDVWYLDNGASNHMTSHREKFQELDESFTGRVKFGDGSTIQIMEK 168
           GEN  VWYLDNGASNHMT HREKF ELD+SFTGRVKFGDG  IQ MEK
Sbjct: 121 GENNGVWYLDNGASNHMTGHREKFIELDKSFTGRVKFGDGLIIQFMEK 164

BLAST of CSPI05G12740 vs. NCBI nr
Match: XP_042450925.1 (uncharacterized protein LOC122035851 [Zingiber officinale])

HSP 1 Score: 209.5 bits (532), Expect = 2.2e-50
Identity = 113/168 (67.26%), Postives = 129/168 (76.79%), Query Frame = 0

Query: 3   KGHRFCGTDRG--RRRGRGRGRGRGTERQSNAGGTSNTGNGTRDKSHSKCLG-NKMRHYA 62
           KG      +RG  R RGRGRGRGRGT+RQ +AGGTS+  +GTRDK H KC    KM HYA
Sbjct: 232 KGRGSSNPNRGNWRGRGRGRGRGRGTQRQDSAGGTSSNNSGTRDKKHIKCFNCEKMGHYA 291

Query: 63  SECRGKGHDDEAHLTCVAEEEPTLMMVVSQEGTRIRCDQEDVILLNKERLLLEMYCNDKN 122
           SEC  K H DEAHLTCVA+EEPTLMM V  E +  R +++D+ILLN+ERLL EMY N K 
Sbjct: 292 SECYSKPHRDEAHLTCVADEEPTLMMTVYHEESHTRHERQDIILLNEERLLPEMYRNAKK 351

Query: 123 GENTDVWYLDNGASNHMTSHREKFQELDESFTGRVKFGDGSTIQIMEK 168
            E+ DVWYLDNGASNHMT HREKFQELDE+ TGRV+FGDGSTI+IM K
Sbjct: 352 EEDQDVWYLDNGASNHMTGHREKFQELDETITGRVRFGDGSTIEIMGK 399

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SIJ02.1e-3559.87Keratin, type I cytoskeletal 9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5K0VFR72.2e-2443.02Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS11... [more]
A0A251U1A01.1e-2346.06Putative zinc finger, CCHC-type OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr09g02... [more]
Q10F841.8e-2143.21Gag-pol polyprotein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0092M19.11... [more]
Q84SW81.8e-2143.21Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica ... [more]
Match NameE-valueIdentityDescription
XP_031741713.13.0e-6882.14uncharacterized protein LOC116403908 [Cucumis sativus][more]
XP_031741744.11.3e-6680.95uncharacterized protein LOC116403940 [Cucumis sativus][more]
XP_031745073.11.6e-6179.87uncharacterized protein LOC116405251 [Cucumis sativus][more]
XP_031741708.11.4e-6077.98uncharacterized protein LOC116403903 [Cucumis sativus][more]
XP_042450925.12.2e-5067.26uncharacterized protein LOC122035851 [Zingiber officinale][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..46
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..50
NoneNo IPR availablePANTHERPTHR34676FAMILY NOT NAMEDcoord: 6..165
NoneNo IPR availablePANTHERPTHR34676:SF11ZINC FINGER, CCHC-TYPE-RELATEDcoord: 6..165

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G12740.1CSPI05G12740.1mRNA