CSPI05G09310 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI05G09310
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr5: 7876051 .. 7876278 (+)
RNA-Seq Expression	CSPI05G09310
Synteny	CSPI05G09310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAACAATTTCAAAACTCACATTTTAGAGGATGGACCAAAGACCACAAGAGGAGTAGTGGGGAGGCGTATGGTAGACAACGACGTGGTCTAGAGATTCTGATTACAAGCAGCAATGCTACCAGCAAACCTGCTGAACAAGAAGGGGAAAACATTGGAAAAGTTGAGCATAATGAGAAAACATGGGGATCAAGAAGAAACAATACCAATGTATTATTGATTTAA

mRNA sequence

ATGGAGAAACAATTTCAAAACTCACATTTTAGAGGATGGACCAAAGACCACAAGAGGAGTAGTGGGGAGGCGTATGGTAGACAACGACGTGGTCTAGAGATTCTGATTACAAGCAGCAATGCTACCAGCAAACCTGCTGAACAAGAAGGGGAAAACATTGGAAAAGTTGAGCATAATGAGAAAACATGGGGATCAAGAAGAAACAATACCAATGTATTATTGATTTAA

Coding sequence (CDS)

ATGGAGAAACAATTTCAAAACTCACATTTTAGAGGATGGACCAAAGACCACAAGAGGAGTAGTGGGGAGGCGTATGGTAGACAACGACGTGGTCTAGAGATTCTGATTACAAGCAGCAATGCTACCAGCAAACCTGCTGAACAAGAAGGGGAAAACATTGGAAAAGTTGAGCATAATGAGAAAACATGGGGATCAAGAAGAAACAATACCAATGTATTATTGATTTAA

Protein sequence

MEKQFQNSHFRGWTKDHKRSSGEAYGRQRRGLEILITSSNATSKPAEQEGENIGKVEHNEKTWGSRRNNTNVLLI*

Homology

[Close]

BLAST of CSPI05G09310 vs. ExPASy TrEMBL
Match: A0A0A0KLL2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G180290 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 5.9e-33
Identity = 72/75 (96.00%), Postives = 73/75 (97.33%), Query Frame = 0


Query: 1  MEKQFQNSHFRGWTKDHKRSSGEAYGRQRRGLEILITSSNATSKPAEQEGENIGKVEHNE 60
          MEKQFQNSHFRGWTKDHKRSSG AYGRQRRGLEILITSSNATSKP EQEGENIGKVEHNE
Sbjct: 1  MEKQFQNSHFRGWTKDHKRSSGAAYGRQRRGLEILITSSNATSKPTEQEGENIGKVEHNE 60

Query: 61 KTWGSRRNNTNVLLI 76
          KTWGSRRNNTNVLL+
Sbjct: 61 KTWGSRRNNTNVLLV 75

[Close]

BLAST of CSPI05G09310 vs. NCBI nr
Match: KGN50515.1 (hypothetical protein Csa_000447 [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 1.2e-32
Identity = 72/75 (96.00%), Postives = 73/75 (97.33%), Query Frame = 0


Query: 1  MEKQFQNSHFRGWTKDHKRSSGEAYGRQRRGLEILITSSNATSKPAEQEGENIGKVEHNE 60
          MEKQFQNSHFRGWTKDHKRSSG AYGRQRRGLEILITSSNATSKP EQEGENIGKVEHNE
Sbjct: 1  MEKQFQNSHFRGWTKDHKRSSGAAYGRQRRGLEILITSSNATSKPTEQEGENIGKVEHNE 60

Query: 61 KTWGSRRNNTNVLLI 76
          KTWGSRRNNTNVLL+
Sbjct: 61 KTWGSRRNNTNVLLV 75

The following BLAST results are available for this feature:

BLAST of CSPI05G09310 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI05G09310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLL2	5.9e-33	96.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G180290 PE=4 SV=1	[more]

BLAST of CSPI05G09310 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN50515.1	1.2e-32	96.00	hypothetical protein Csa_000447 [Cucumis sativus]	[more]

BLAST of CSPI05G09310 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G09310.1	CSPI05G09310.1	mRNA