CSPI05G08300 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI05G08300
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	DNA polymerase delta subunit 4
Location	Chr5: 7050789 .. 7052501 (-)
RNA-Seq Expression	CSPI05G08300
Synteny	CSPI05G08300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAATAAAAAAATTGCTTTCTCTTTATTAATTATTCTTTTAGGTAATTTAGAATTAAAAAAGAAAAGAATGGGCCGGATCTCAATCGGATCCTGGCCCAGATATTATTAGGGTCCATATAAGGAGAAAGGCCACATCGAATTAGACCTCCAAAATGCAAAAGAACAAATTTGAAATTTGAAATTCCGAAGTCGATCGATCGCAGAGAAGGAGCAAAATCAAAAATGGCATCAACGCGAGGAGGGTTGAAAGATTTCTACAAGCAAAGGAAAAGCAGTGGAATCTCCAAGGCAAAGGCTTCAAAGCCCTCTTCTAGGAAAACTAAATCTCCGGCCAACTCTGCATCTTTGGGCTCCGATGCCGTCCAACCGGCTGCTCTCGTTTCTCACGGATCCCTCGACCTTCAAGGTTCATATCTCTTCTTCTACACTCTTCTCCGTATCTTCATATTCTTGGATATCTGCTTAAGTTGTTGGGTATTGGTTGAGTTCTATAATTGTTGAATTAAAGATTCTCAATGGTTGAATAACTTTTCTCGTGGTTGGGAAGGATTAAGAAATTGTAGGGTTTCAGTCACAATCAAGTTATTCAATAGTTGAATTAAAGATATCTATAGTTTTGGATTCTTTAACTTTTTTACTGTAGTTATGCACAAAGAAGGATGAACACTTAAGTCTTACCGTCTCTATGATGTGTGTTGGACATTTGGATGCTTTCATACTTGTTGGACACTTATAGGATACTTGTTCACACCAAAAATGTCAGTAGTTGTGCAAAATTAATATAAGCCTAACCGGTCTGCACAAAGAACACTTGTTAAGTTACTAAATGGACACCTAACAATCTAGGACAAATGGAAGAAATTTTGAAGGCGTAGTACGTCAGTCATTTTTAGCACATATATGTATAAACTTATTGACTTTTCTAGTTATTGATGTATAATTTATAAATTTTTCCTTGCCACGTTTGTGTTGTATCTATGTGTCGTGTTCGTACCTACTTTTATAGTGGTCGAAATTATGGATGCCCAATGTTAGATTTCTTTTAATCTTCGACCAGAAAAATCTTATCTATCAATGTGTTTGGACATATGGCTATAATACCATGATATTTGTTTAAAAAAAAGTGTACCTTTTGCCTGATCTATTTTAATAATCTGCATTTTGTTTCATTTTGAACATTGATTTTTGTATTAGATGATTATGGCGTGTCTGAGAATACGCTGAGGCAATTTGATATGAACACGGCATATGGACCTTGCCTCGGAATGACCAGAATGGCACGGTGGGAGCGTGCCTGTAGTCTTGGTCTGAACCCTCCAAAAGACATTGGGACACTCTTAAAGGCTGGAAAAGTGCAGTTGGAGTGCTTATGGGATTCTCGAGTTTAAACTTGTATGCTTGGTGTGTTATTTTTGTTTAACGTATGAAGTGCATGCTGTGCTTTTGCTTTTGGACAAAATGTTCAGCCCCTAGCTGAAACAATATAATCACTTTTCCTGTGATGTGAATGGGGTTAGAATGTTTGCTGATGACAGCTCCCCTAGTTATTTACATCTTACTTATGTTGAAAACTTATAACAAGTAGTTGTATAGTTAAATTTGGTGATATTTTCCTTTCCTAGTGTAGTTACACTTGAACTTGATATGATGTGTGAATCCGTGATTAACGACACCTTTTGATTCCCAATAATTGAAAAGGGAGGGATATTTGT

mRNA sequence

AGAATAAAAAAATTGCTTTCTCTTTATTAATTATTCTTTTAGGTAATTTAGAATTAAAAAAGAAAAGAATGGGCCGGATCTCAATCGGATCCTGGCCCAGATATTATTAGGGTCCATATAAGGAGAAAGGCCACATCGAATTAGACCTCCAAAATGCAAAAGAACAAATTTGAAATTTGAAATTCCGAAGTCGATCGATCGCAGAGAAGGAGCAAAATCAAAAATGGCATCAACGCGAGGAGGGTTGAAAGATTTCTACAAGCAAAGGAAAAGCAGTGGAATCTCCAAGGCAAAGGCTTCAAAGCCCTCTTCTAGGAAAACTAAATCTCCGGCCAACTCTGCATCTTTGGGCTCCGATGCCGTCCAACCGGCTGCTCTCGTTTCTCACGGATCCCTCGACCTTCAAGATGATTATGGCGTGTCTGAGAATACGCTGAGGCAATTTGATATGAACACGGCATATGGACCTTGCCTCGGAATGACCAGAATGGCACGGTGGGAGCGTGCCTGTAGTCTTGGTCTGAACCCTCCAAAAGACATTGGGACACTCTTAAAGGCTGGAAAAGTGCAGTTGGAGTGCTTATGGGATTCTCGAGTTTAAACTTGTATGCTTGGTGTGTTATTTTTGTTTAACGTATGAAGTGCATGCTGTGCTTTTGCTTTTGGACAAAATGTTCAGCCCCTAGCTGAAACAATATAATCACTTTTCCTGTGATGTGAATGGGGTTAGAATGTTTGCTGATGACAGCTCCCCTAGTTATTTACATCTTACTTATGTTGAAAACTTATAACAAGTAGTTGTATAGTTAAATTTGGTGATATTTTCCTTTCCTAGTGTAGTTACACTTGAACTTGATATGATGTGTGAATCCGTGATTAACGACACCTTTTGATTCCCAATAATTGAAAAGGGAGGGATATTTGT

Coding sequence (CDS)

ATGGCATCAACGCGAGGAGGGTTGAAAGATTTCTACAAGCAAAGGAAAAGCAGTGGAATCTCCAAGGCAAAGGCTTCAAAGCCCTCTTCTAGGAAAACTAAATCTCCGGCCAACTCTGCATCTTTGGGCTCCGATGCCGTCCAACCGGCTGCTCTCGTTTCTCACGGATCCCTCGACCTTCAAGATGATTATGGCGTGTCTGAGAATACGCTGAGGCAATTTGATATGAACACGGCATATGGACCTTGCCTCGGAATGACCAGAATGGCACGGTGGGAGCGTGCCTGTAGTCTTGGTCTGAACCCTCCAAAAGACATTGGGACACTCTTAAAGGCTGGAAAAGTGCAGTTGGAGTGCTTATGGGATTCTCGAGTTTAA

Protein sequence

MASTRGGLKDFYKQRKSSGISKAKASKPSSRKTKSPANSASLGSDAVQPAALVSHGSLDLQDDYGVSENTLRQFDMNTAYGPCLGMTRMARWERACSLGLNPPKDIGTLLKAGKVQLECLWDSRV*

Homology

[Close]

BLAST of CSPI05G08300 vs. ExPASy Swiss-Prot
Match: Q9HCU8 (DNA polymerase delta subunit 4 OS=Homo sapiens OX=9606 GN=POLD4 PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.0e-07
Identity = 27/64 (42.19%), Postives = 38/64 (59.38%), Query Frame = 0


Query: 61  QDDYGVSENTLRQFDMNTAYGPCLGMTRMARWERACSLGLNPPKDIGTLLKA--GKVQLE 120
           +D+       LRQFD+   YGPC G+TR+ RW RA  +GL PP ++  +LK   G  + +
Sbjct: 39  RDEEEAELELLRQFDLAWQYGPCTGITRLQRWCRAKQMGLEPPPEVWQVLKTHPGDPRFQ 98

Query: 121 C-LW 122
           C LW
Sbjct: 99  CSLW 102

[Close]

BLAST of CSPI05G08300 vs. ExPASy Swiss-Prot
Match: Q3T0X9 (DNA polymerase delta subunit 4 OS=Bos taurus OX=9913 GN=POLD4 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.4e-07
Identity = 25/54 (46.30%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 71  LRQFDMNTAYGPCLGMTRMARWERACSLGLNPPKDIGTLLKA--GKVQLEC-LW 122
           LRQFD+   YGPC G+TR+ RW RA  +GL PP ++  +L++  G  + +C LW
Sbjct: 49  LRQFDLAWQYGPCTGITRLQRWHRAEQMGLKPPPEVHQVLQSHPGDPRFQCSLW 102

[Close]

BLAST of CSPI05G08300 vs. ExPASy Swiss-Prot
Match: Q9CWP8 (DNA polymerase delta subunit 4 OS=Mus musculus OX=10090 GN=Pold4 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.0e-07
Identity = 23/42 (54.76%), Postives = 30/42 (71.43%), Query Frame = 0


Query: 71  LRQFDMNTAYGPCLGMTRMARWERACSLGLNPPKDIGTLLKA 113
           LRQFD+   YGPC G+TR+ RW RA  +GL PP ++  +LKA
Sbjct: 49  LRQFDLAWQYGPCTGITRLQRWSRAEQMGLKPPLEVYQVLKA 90

[Close]

BLAST of CSPI05G08300 vs. ExPASy Swiss-Prot
Match: O59835 (DNA polymerase delta subunit 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=cdm1 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.2e-06
Identity = 23/43 (53.49%), Postives = 28/43 (65.12%), Query Frame = 0


Query: 68  ENTLRQFDMNTAYGPCLGMTRMARWERACSLGLNPPKDIGTLL 111
           E  L  FD    YGP LGMTRM RW+RA +  LNPP+ +G +L
Sbjct: 94  EFILHHFDTTARYGPYLGMTRMQRWKRAKNFNLNPPETVGKIL 136

[Close]

BLAST of CSPI05G08300 vs. ExPASy TrEMBL
Match: A0A0A0KND6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G172885 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 6.9e-63
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MASTRGGLKDFYKQRKSSGISKAKASKPSSRKTKSPANSASLGSDAVQPAALVSHGSLDL 60
           MASTRGGLKDFYKQRKSSGISKAKASKPSSRKTKSPANSASLGSDAVQPAALVSHGSLDL
Sbjct: 1   MASTRGGLKDFYKQRKSSGISKAKASKPSSRKTKSPANSASLGSDAVQPAALVSHGSLDL 60

Query: 61  QDDYGVSENTLRQFDMNTAYGPCLGMTRMARWERACSLGLNPPKDIGTLLKAGKVQLECL 120
           QDDYGVSENTLRQFDMNTAYGPCLGMTRMARWERACSLGLNPPKDIGTLLKAGKVQLECL
Sbjct: 61  QDDYGVSENTLRQFDMNTAYGPCLGMTRMARWERACSLGLNPPKDIGTLLKAGKVQLECL 120

Query: 121 WDSRV 126
           WDSRV
Sbjct: 121 WDSRV 125

[Close]

BLAST of CSPI05G08300 vs. ExPASy TrEMBL
Match: A0A5A7UNL0 (DNA polymerase delta subunit 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1728G00460 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 3.2e-60
Identity = 121/125 (96.80%), Postives = 122/125 (97.60%), Query Frame = 0


Query: 1   MASTRGGLKDFYKQRKSSGISKAKASKPSSRKTKSPANSASLGSDAVQPAALVSHGSLDL 60
           MASTRGGLKDFYKQRKSSGISKAKASKPSSRKTKSPANSASLGS+AVQPAALVSHGSLDL
Sbjct: 1   MASTRGGLKDFYKQRKSSGISKAKASKPSSRKTKSPANSASLGSNAVQPAALVSHGSLDL 60

Query: 61  QDDYGVSENTLRQFDMNTAYGPCLGMTRMARWERACSLGLNPPKDIGTLLKAGKVQLECL 120
           QDDYG SEN LRQFDMN AYGPCLGMTRMARWERACSLGLNPPKDIGTLLKAGKVQLECL
Sbjct: 61  QDDYGESENMLRQFDMNMAYGPCLGMTRMARWERACSLGLNPPKDIGTLLKAGKVQLECL 120

Query: 121 WDSRV 126
           WDSRV
Sbjct: 121 WDSRV 125

[Close]

BLAST of CSPI05G08300 vs. ExPASy TrEMBL
Match: A0A1S3CT23 (DNA polymerase delta subunit 4 OS=Cucumis melo OX=3656 GN=LOC103504636 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 3.2e-60
Identity = 121/125 (96.80%), Postives = 122/125 (97.60%), Query Frame = 0


Query: 1   MASTRGGLKDFYKQRKSSGISKAKASKPSSRKTKSPANSASLGSDAVQPAALVSHGSLDL 60
           MASTRGGLKDFYKQRKSSGISKAKASKPSSRKTKSPANSASLGS+AVQPAALVSHGSLDL
Sbjct: 1   MASTRGGLKDFYKQRKSSGISKAKASKPSSRKTKSPANSASLGSNAVQPAALVSHGSLDL 60

Query: 61  QDDYGVSENTLRQFDMNTAYGPCLGMTRMARWERACSLGLNPPKDIGTLLKAGKVQLECL 120
           QDDYG SEN LRQFDMN AYGPCLGMTRMARWERACSLGLNPPKDIGTLLKAGKVQLECL
Sbjct: 61  QDDYGESENMLRQFDMNMAYGPCLGMTRMARWERACSLGLNPPKDIGTLLKAGKVQLECL 120

Query: 121 WDSRV 126
           WDSRV
Sbjct: 121 WDSRV 125

[Close]

BLAST of CSPI05G08300 vs. ExPASy TrEMBL
Match: A0A6J1H180 (uncharacterized protein LOC111459143 OS=Cucurbita moschata OX=3662 GN=LOC111459143 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 3.1e-47
Identity = 100/125 (80.00%), Postives = 108/125 (86.40%), Query Frame = 0


Query: 1   MASTRGGLKDFYKQRKSSGISKAKASKPSSRKTKSPANSASLGSDAVQPAALVSHGSLDL 60
           MAS RGG+KDFYKQRK+SG+S  K SKPSSRKTKS ANSA+L SD VQPAAL+SHGSLDL
Sbjct: 1   MASARGGMKDFYKQRKNSGVS--KVSKPSSRKTKSRANSATLDSDGVQPAALISHGSLDL 60

Query: 61  QDDYGVSENTLRQFDMNTAYGPCLGMTRMARWERACSLGLNPPKDIGTLLKAGKVQLECL 120
           +DDYG SEN LRQFDMN AYGPCLGMTRM RWE A  LGLNPPK+I TLLK GKVQLECL
Sbjct: 61  RDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGLNPPKEIETLLKGGKVQLECL 120

Query: 121 WDSRV 126
           W SR+
Sbjct: 121 WASRI 123

[Close]

BLAST of CSPI05G08300 vs. ExPASy TrEMBL
Match: A0A6J1K4T3 (uncharacterized protein LOC111491182 OS=Cucurbita maxima OX=3661 GN=LOC111491182 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 7.7e-46
Identity = 98/125 (78.40%), Postives = 107/125 (85.60%), Query Frame = 0


Query: 1   MASTRGGLKDFYKQRKSSGISKAKASKPSSRKTKSPANSASLGSDAVQPAALVSHGSLDL 60
           MAS RGG+KDFYKQRK+SG+S  K SKPSS KTKS A+SA+L SD VQPAAL+SHGSLDL
Sbjct: 1   MASARGGMKDFYKQRKNSGVS--KVSKPSSGKTKSRASSATLDSDGVQPAALISHGSLDL 60

Query: 61  QDDYGVSENTLRQFDMNTAYGPCLGMTRMARWERACSLGLNPPKDIGTLLKAGKVQLECL 120
           +DDYG SEN LRQFDMN AYGPCLGMTRM RWE A  LGLNPPK+I TLLK GKVQLECL
Sbjct: 61  RDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGLNPPKEIETLLKGGKVQLECL 120

Query: 121 WDSRV 126
           W SR+
Sbjct: 121 WASRI 123

[Close]

BLAST of CSPI05G08300 vs. NCBI nr
Match: XP_004143634.1 (uncharacterized protein LOC101209940 [Cucumis sativus] >KGN50409.1 hypothetical protein Csa_000175 [Cucumis sativus])

HSP 1 Score: 249.6 bits (636), Expect = 1.4e-62
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MASTRGGLKDFYKQRKSSGISKAKASKPSSRKTKSPANSASLGSDAVQPAALVSHGSLDL 60
           MASTRGGLKDFYKQRKSSGISKAKASKPSSRKTKSPANSASLGSDAVQPAALVSHGSLDL
Sbjct: 1   MASTRGGLKDFYKQRKSSGISKAKASKPSSRKTKSPANSASLGSDAVQPAALVSHGSLDL 60

Query: 61  QDDYGVSENTLRQFDMNTAYGPCLGMTRMARWERACSLGLNPPKDIGTLLKAGKVQLECL 120
           QDDYGVSENTLRQFDMNTAYGPCLGMTRMARWERACSLGLNPPKDIGTLLKAGKVQLECL
Sbjct: 61  QDDYGVSENTLRQFDMNTAYGPCLGMTRMARWERACSLGLNPPKDIGTLLKAGKVQLECL 120

Query: 121 WDSRV 126
           WDSRV
Sbjct: 121 WDSRV 125

[Close]

BLAST of CSPI05G08300 vs. NCBI nr
Match: XP_008467236.1 (PREDICTED: DNA polymerase delta subunit 4 [Cucumis melo] >KAA0055161.1 DNA polymerase delta subunit 4 [Cucumis melo var. makuwa] >TYK00302.1 DNA polymerase delta subunit 4 [Cucumis melo var. makuwa])

HSP 1 Score: 240.7 bits (613), Expect = 6.7e-60
Identity = 121/125 (96.80%), Postives = 122/125 (97.60%), Query Frame = 0


Query: 1   MASTRGGLKDFYKQRKSSGISKAKASKPSSRKTKSPANSASLGSDAVQPAALVSHGSLDL 60
           MASTRGGLKDFYKQRKSSGISKAKASKPSSRKTKSPANSASLGS+AVQPAALVSHGSLDL
Sbjct: 1   MASTRGGLKDFYKQRKSSGISKAKASKPSSRKTKSPANSASLGSNAVQPAALVSHGSLDL 60

Query: 61  QDDYGVSENTLRQFDMNTAYGPCLGMTRMARWERACSLGLNPPKDIGTLLKAGKVQLECL 120
           QDDYG SEN LRQFDMN AYGPCLGMTRMARWERACSLGLNPPKDIGTLLKAGKVQLECL
Sbjct: 61  QDDYGESENMLRQFDMNMAYGPCLGMTRMARWERACSLGLNPPKDIGTLLKAGKVQLECL 120

Query: 121 WDSRV 126
           WDSRV
Sbjct: 121 WDSRV 125

[Close]

BLAST of CSPI05G08300 vs. NCBI nr
Match: XP_038875328.1 (DNA polymerase delta subunit 4 [Benincasa hispida])

HSP 1 Score: 223.0 bits (567), Expect = 1.4e-54
Identity = 114/127 (89.76%), Postives = 117/127 (92.13%), Query Frame = 0


Query: 1   MASTRGGLKDFYKQRKSSGISKA--KASKPSSRKTKSPANSASLGSDAVQPAALVSHGSL 60
           MAS RGGLKDFYKQRK+SGISKA  KASKPSSRK KSPANSASLGSDAVQPAAL+SHGSL
Sbjct: 1   MASARGGLKDFYKQRKNSGISKANSKASKPSSRKIKSPANSASLGSDAVQPAALISHGSL 60

Query: 61  DLQDDYGVSENTLRQFDMNTAYGPCLGMTRMARWERACSLGLNPPKDIGTLLKAGKVQLE 120
           DLQDDYG  EN LRQFDMN AYGPCLGMTRMARWERAC+LGLNPPKDI TLLKA KVQLE
Sbjct: 61  DLQDDYGALENMLRQFDMNMAYGPCLGMTRMARWERACNLGLNPPKDIETLLKARKVQLE 120

Query: 121 CLWDSRV 126
           CLWDSRV
Sbjct: 121 CLWDSRV 127

[Close]

BLAST of CSPI05G08300 vs. NCBI nr
Match: XP_022957680.1 (uncharacterized protein LOC111459143 [Cucurbita moschata])

HSP 1 Score: 197.6 bits (501), Expect = 6.5e-47
Identity = 100/125 (80.00%), Postives = 108/125 (86.40%), Query Frame = 0


Query: 1   MASTRGGLKDFYKQRKSSGISKAKASKPSSRKTKSPANSASLGSDAVQPAALVSHGSLDL 60
           MAS RGG+KDFYKQRK+SG+S  K SKPSSRKTKS ANSA+L SD VQPAAL+SHGSLDL
Sbjct: 1   MASARGGMKDFYKQRKNSGVS--KVSKPSSRKTKSRANSATLDSDGVQPAALISHGSLDL 60

Query: 61  QDDYGVSENTLRQFDMNTAYGPCLGMTRMARWERACSLGLNPPKDIGTLLKAGKVQLECL 120
           +DDYG SEN LRQFDMN AYGPCLGMTRM RWE A  LGLNPPK+I TLLK GKVQLECL
Sbjct: 61  RDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGLNPPKEIETLLKGGKVQLECL 120

Query: 121 WDSRV 126
           W SR+
Sbjct: 121 WASRI 123

[Close]

BLAST of CSPI05G08300 vs. NCBI nr
Match: KAG6605696.1 (DNA polymerase delta subunit 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035605.1 DNA polymerase delta subunit 4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 197.6 bits (501), Expect = 6.5e-47
Identity = 100/125 (80.00%), Postives = 109/125 (87.20%), Query Frame = 0


Query: 1   MASTRGGLKDFYKQRKSSGISKAKASKPSSRKTKSPANSASLGSDAVQPAALVSHGSLDL 60
           MAS RGG+KDFYKQRK+SG+S  K SKPSSRKTKS ANSA+L SDAVQPAAL+SHGSLDL
Sbjct: 1   MASARGGMKDFYKQRKNSGVS--KVSKPSSRKTKSRANSATLDSDAVQPAALISHGSLDL 60

Query: 61  QDDYGVSENTLRQFDMNTAYGPCLGMTRMARWERACSLGLNPPKDIGTLLKAGKVQLECL 120
           +DDYG SEN LRQFDMN AYGPCLGMTRM RWE A  LGLNPPK+I +LLK GKVQLECL
Sbjct: 61  RDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGLNPPKEIESLLKGGKVQLECL 120

Query: 121 WDSRV 126
           W SR+
Sbjct: 121 WASRI 123

[Close]

BLAST of CSPI05G08300 vs. TAIR 10
Match: AT1G09815.1 (polymerase delta 4 )

HSP 1 Score: 150.2 bits (378), Expect = 1.1e-36
Identity = 76/125 (60.80%), Postives = 89/125 (71.20%), Query Frame = 0


Query: 1   MASTRGGLKDFYKQRKSSGISKAKASKPSSRKTKSPANSASLGSDAVQPAALVSHGSLDL 60
           MA+T   LK FYKQ KS+       SKPSSRK  +P ++A+ GSD  QPAAL+SHGS+DL
Sbjct: 1   MATTAKNLKGFYKQTKSNITGGISKSKPSSRKV-APKHAAAQGSDVTQPAALISHGSVDL 60

Query: 61  QDDYGVSENTLRQFDMNTAYGPCLGMTRMARWERACSLGLNPPKDIGTLLKAGKVQLECL 120
            +DY   E  LRQFDMN  YGPCLGMTR+ RWERA  LG+NPP +I  LLK GKVQ +CL
Sbjct: 61  NEDYDKEEEMLRQFDMNITYGPCLGMTRLDRWERAVRLGMNPPNEIEKLLKTGKVQQDCL 120

Query: 121 WDSRV 126
           W  RV
Sbjct: 121 WQGRV 124

The following BLAST results are available for this feature:

BLAST of CSPI05G08300 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9HCU8	1.0e-07	42.19	DNA polymerase delta subunit 4 OS=Homo sapiens OX=9606 GN=POLD4 PE=1 SV=1	[more]
Q3T0X9	1.4e-07	46.30	DNA polymerase delta subunit 4 OS=Bos taurus OX=9913 GN=POLD4 PE=1 SV=1	[more]
Q9CWP8	3.0e-07	54.76	DNA polymerase delta subunit 4 OS=Mus musculus OX=10090 GN=Pold4 PE=1 SV=1	[more]
O59835	1.2e-06	53.49	DNA polymerase delta subunit 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2...	[more]

BLAST of CSPI05G08300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KND6	6.9e-63	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G172885 PE=4 SV=1	[more]
A0A5A7UNL0	3.2e-60	96.80	DNA polymerase delta subunit 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3CT23	3.2e-60	96.80	DNA polymerase delta subunit 4 OS=Cucumis melo OX=3656 GN=LOC103504636 PE=4 SV=1	[more]
A0A6J1H180	3.1e-47	80.00	uncharacterized protein LOC111459143 OS=Cucurbita moschata OX=3662 GN=LOC1114591...	[more]
A0A6J1K4T3	7.7e-46	78.40	uncharacterized protein LOC111491182 OS=Cucurbita maxima OX=3661 GN=LOC111491182...	[more]

BLAST of CSPI05G08300 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143634.1	1.4e-62	100.00	uncharacterized protein LOC101209940 [Cucumis sativus] >KGN50409.1 hypothetical ...	[more]
XP_008467236.1	6.7e-60	96.80	PREDICTED: DNA polymerase delta subunit 4 [Cucumis melo] >KAA0055161.1 DNA polym...	[more]
XP_038875328.1	1.4e-54	89.76	DNA polymerase delta subunit 4 [Benincasa hispida]	[more]
XP_022957680.1	6.5e-47	80.00	uncharacterized protein LOC111459143 [Cucurbita moschata]	[more]
KAG6605696.1	6.5e-47	80.00	DNA polymerase delta subunit 4, partial [Cucurbita argyrosperma subsp. sororia] ...	[more]

BLAST of CSPI05G08300 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G09815.1	1.1e-36	60.80	polymerase delta 4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007218	DNA polymerase delta, subunit 4	PFAM	PF04081	DNA_pol_delta_4	coord: 62..111 e-value: 1.8E-19 score: 70.4
IPR007218	DNA polymerase delta, subunit 4	PANTHER	PTHR14303	DNA POLYMERASE DELTA SUBUNIT 4	coord: 5..125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..46
None	No IPR available	PANTHER	PTHR14303:SF12	DNA POLYMERASE DELTA SUBUNIT 4	coord: 5..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G08300.1	CSPI05G08300.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006261	DNA-dependent DNA replication
biological_process	GO:0000731	DNA synthesis involved in DNA repair
biological_process	GO:0006260	DNA replication
cellular_component	GO:0043625	delta DNA polymerase complex
molecular_function	GO:0003887	DNA-directed DNA polymerase activity