CSPI05G04950 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI05G04950
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr5: 4701554 .. 4702584 (+)
RNA-Seq Expression	CSPI05G04950
Synteny	CSPI05G04950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATATATTGAAGAACAAATTAGGAAAAGTGATATATATATATATAAGTATATAGGTATAGGTATGAATGTTTACATCGTATTCAGAAAAAGGGAAGACGAAAAGGCAAAATAAATTAAAACAATAAACTAATTTCAAAATAAATAAATAAATAAATAAACTAATTAGGGTTCATGTATGGAGTTGATGGATTCCGATTGAGATCATCACTACTCACAAACCCAATTATGTTGAATTTGATGAGTATTCAAATCCAAATTCATCGAACAACTAATCTCCGACGAAACCCTCCGTCTAAAAATATGAATCAAACGAACTCTCCCTCTCAATTTCACAAAGCTACTAAAATTCAAAATCCCATTACTACCACTAACATTCTTCGCCGAACCTTCCACGGTAACATTCATCCTCTTACTCCCTTTAGCCCCAGCTCTCCCACCCCCAGTACTTCTCTCCCCGAAGATCATTCCACCATACACAAGACCGACGGTGCCGTTGTCGAAATTGAAAGGACCGAAGTTGGAATTATCGACGGTGAATTCAGCGTTGAAGGAGAGATTAAGAGAATTAGGAGAAGAGGAATTAGCGTTGATAGAGAGGGAGACTTTAGGGTTTGAAATGGAAGAGAGGCTGATGGAAGGGGAATTGACACGGAGGACGATGAGAGCGAAGATTAGAAGAGCAACGCTGAGGAAGACGAAAGTGGAGAAGATGTAGATGAAGCATTTGTTGGATCGTTCTTTACGGAGAATTTTGAAGGTAGCGAGTTGTTGTTCTTCGTTGGGTTTGTGGTGAGCTTGGTAGTGGGCTAATGGAAAGCTCTGGCTGTCCTCTCCCATGGCGGAGGAGAGAGAGAAGAAGAAGAAAAGAAATTGGGTTTTTTTAGAGAGAAGAAGAGAAAGAGAGAGAATTTATAGGTGAAAGTGGAAGAAAGCGGTTAGTGAGTGAATTCGTGAGAAGCGGAGAGGTCAGTTTTGGAATGCGCCGGCGAAGCTCTGTTTTTTGTTTTTACATTTTCCGGTTAGTATTAAT

mRNA sequence

CATATATTGAAGAACAAATTAGGAAAAGTGATATATATATATATAAGTATATAGGTATAGGTATGAATGTTTACATCGTATTCAGAAAAAGGGAAGACGAAAAGGCAAAATAAATTAAAACAATAAACTAATTTCAAAATAAATAAATAAATAAATAAACTAATTAGGGTTCATGTATGGAGTTGATGGATTCCGATTGAGATCATCACTACTCACAAACCCAATTATGTTGAATTTGATGAGTATTCAAATCCAAATTCATCGAACAACTAATCTCCGACGAAACCCTCCGTCTAAAAATATGAATCAAACGAACTCTCCCTCTCAATTTCACAAAGCTACTAAAATTCAAAATCCCATTACTACCACTAACATTCTTCGCCGAACCTTCCACGGTAACATTCATCCTCTTACTCCCTTTAGCCCCAGCTCTCCCACCCCCAGTACTTCTCTCCCCGAAGATCATTCCACCATACACAAGACCGACGGTGCCGTTGTCGAAATTGAAAGGACCGAAGTTGGAATTATCGACGGTGAATTCAGCGTTGAAGGAGAGATTAAGAGAATTAGGAGAAGAGGAATTAGCGTTGATAGAGAGGGAGACTTTAGGGTTTGAAATGGAAGAGAGGCTGATGGAAGGGGAATTGACACGGAGGACGATGAGAGCGAAGATTAGAAGAGCAACGCTGAGGAAGACGAAAGTGGAGAAGATGTAGATGAAGCATTTGTTGGATCGTTCTTTACGGAGAATTTTGAAGGTAGCGAGTTGTTGTTCTTCGTTGGGTTTGTGGTGAGCTTGGTAGTGGGCTAATGGAAAGCTCTGGCTGTCCTCTCCCATGGCGGAGGAGAGAGAGAAGAAGAAGAAAAGAAATTGGGTTTTTTTAGAGAGAAGAAGAGAAAGAGAGAGAATTTATAGGTGAAAGTGGAAGAAAGCGGTTAGTGAGTGAATTCGTGAGAAGCGGAGAGGTCAGTTTTGGAATGCGCCGGCGAAGCTCTGTTTTTTGTTTTTACATTTTCCGGTTAGTATTAAT

Coding sequence (CDS)

ATGTATGGAGTTGATGGATTCCGATTGAGATCATCACTACTCACAAACCCAATTATGTTGAATTTGATGAGTATTCAAATCCAAATTCATCGAACAACTAATCTCCGACGAAACCCTCCGTCTAAAAATATGAATCAAACGAACTCTCCCTCTCAATTTCACAAAGCTACTAAAATTCAAAATCCCATTACTACCACTAACATTCTTCGCCGAACCTTCCACGGTAACATTCATCCTCTTACTCCCTTTAGCCCCAGCTCTCCCACCCCCAGTACTTCTCTCCCCGAAGATCATTCCACCATACACAAGACCGACGGTGCCGTTGTCGAAATTGAAAGGACCGAAGTTGGAATTATCGACGGTGAATTCAGCGTTGAAGGAGAGATTAAGAGAATTAGGAGAAGAGGAATTAGCGTTGATAGAGAGGGAGACTTTAGGGTTTGA

Protein sequence

MYGVDGFRLRSSLLTNPIMLNLMSIQIQIHRTTNLRRNPPSKNMNQTNSPSQFHKATKIQNPITTTNILRRTFHGNIHPLTPFSPSSPTPSTSLPEDHSTIHKTDGAVVEIERTEVGIIDGEFSVEGEIKRIRRRGISVDREGDFRV*

Homology

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BLAST of CSPI05G04950 vs. ExPASy TrEMBL
Match: A0A2P5FIX7 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_063290 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 8.6e-04
Identity = 45/142 (31.69%), Postives = 67/142 (47.18%), Query Frame = 0


Query: 13  LLTNPIMLNLMSIQIQIHRTTNLRRNPPSKNMNQTNSPSQFHKATKIQNP---ITTTNI- 72
           L+T+PI  + +  Q + H T +L R P   N+NQ N  +    AT ++NP   IT   I 
Sbjct: 4   LITSPIP-DFLRFQNESHITPHLTRLPGLNNLNQANFTTDPRVATHLENPRIQITAQLIS 63

Query: 73  -----LRRTFHGNIHPLTPFSPSSPTPSTSLPEDHSTIHKTDGAVVEIERTEVGIIDGEF 132
                 R   H    P  P  P    P + LP+  + + +   AV+E  R EV ++D   
Sbjct: 64  PFWQPARPNLHRQAQPTRPLRPDPALPESPLPDFLAPVEEPRRAVLEPVRAEVRVLDRHL 123

Query: 133 SVEGEIK-RIRRRGISVDREGD 145
             +G +  R RRRG+S   +GD
Sbjct: 124 GHQGRVDVRPRRRGVSEALDGD 144

The following BLAST results are available for this feature:

BLAST of CSPI05G04950 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI05G04950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P5FIX7	8.6e-04	31.69	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_063290 PE=4 SV...	[more]

BLAST of CSPI05G04950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

BLAST of CSPI05G04950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G04950.1	CSPI05G04950.1	mRNA