CSPI05G02870 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI05G02870
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr5: 3363186 .. 3363359 (+)
RNA-Seq ExpressionCSPI05G02870
SyntenyCSPI05G02870
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAATGAGAAGAATCCCTGAAACAGGAGACAGGAAGATGGTGGTGATGGTGATCATGGTAAATGATGCCCTGAAGGGTGCGAAAGTCGTCGACAGGACAAGGAATAGAGATAGGTCCTTTCTGATCGAAGCCATACTCGTCCTCGGCCTTCTTCAAGAGCTGAACAAATAA

mRNA sequence

ATGGGAATGAGAAGAATCCCTGAAACAGGAGACAGGAAGATGGTGGTGATGGTGATCATGGTAAATGATGCCCTGAAGGGTGCGAAAGTCGTCGACAGGACAAGGAATAGAGATAGGTCCTTTCTGATCGAAGCCATACTCGTCCTCGGCCTTCTTCAAGAGCTGAACAAATAA

Coding sequence (CDS)

ATGGGAATGAGAAGAATCCCTGAAACAGGAGACAGGAAGATGGTGGTGATGGTGATCATGGTAAATGATGCCCTGAAGGGTGCGAAAGTCGTCGACAGGACAAGGAATAGAGATAGGTCCTTTCTGATCGAAGCCATACTCGTCCTCGGCCTTCTTCAAGAGCTGAACAAATAA

Protein sequence

MGMRRIPETGDRKMVVMVIMVNDALKGAKVVDRTRNRDRSFLIEAILVLGLLQELNK*
Homology
[Close]
BLAST of CSPI05G02870 vs. ExPASy TrEMBL
Match: A0A5A7TGK2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00190 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.4e-10
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 1  MGMRRIPETGDRKMVVMVIMVNDALKGAKVVDRTRNRD 39
          MGMRRIPETGDRKMVVMVIMVN+ALKGAKVVDR RNRD
Sbjct: 1  MGMRRIPETGDRKMVVMVIMVNNALKGAKVVDRARNRD 38

[Close]
BLAST of CSPI05G02870 vs. ExPASy TrEMBL
Match: A0A6J1E3M1 (uncharacterized protein LOC111430288 OS=Cucurbita moschata OX=3662 GN=LOC111430288 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.5e-09
Identity = 36/55 (65.45%), Postives = 47/55 (85.45%), Query Frame = 0 

Query: 1  MGMRRIPETGD-RKMVVMVIMVNDALKGAKVVDRTRNRDRSFLIEAILVLGLLQE 55
          MGMRRIP+TGD +KM+ ++I++N AL+  +VVDR R+ DRSFL+EAILV GLLQE
Sbjct: 1  MGMRRIPKTGDGKKMMGVMIVMNYALESTEVVDRARDGDRSFLVEAILVFGLLQE 55

[Close]
BLAST of CSPI05G02870 vs. NCBI nr
Match: XP_038875258.1 (uncharacterized protein LOC120067761 [Benincasa hispida])

HSP 1 Score: 85.1 bits (209), Expect = 2.2e-13
Identity = 46/58 (79.31%), Postives = 52/58 (89.66%), Query Frame = 0 

Query: 1  MGMRRIPETGDRKM-VVMVIMVNDALKGAKVVDRTRNRDRSFLIEAILVLGLLQELNK 58
          M MRRIP+TGD KM VV+V+MVN+ALKGAKVVDR RN D SFLI+AILVLGLLQEL+K
Sbjct: 1  MRMRRIPKTGDGKMVVVVVVMVNNALKGAKVVDRARNGDGSFLIKAILVLGLLQELDK 58

[Close]
BLAST of CSPI05G02870 vs. NCBI nr
Match: KAA0042524.1 (hypothetical protein E6C27_scaffold44G00170 [Cucumis melo var. makuwa] >TYK05927.1 hypothetical protein E5676_scaffold376G00190 [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 5.0e-10
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 1  MGMRRIPETGDRKMVVMVIMVNDALKGAKVVDRTRNRD 39
          MGMRRIPETGDRKMVVMVIMVN+ALKGAKVVDR RNRD
Sbjct: 1  MGMRRIPETGDRKMVVMVIMVNNALKGAKVVDRARNRD 38

[Close]
BLAST of CSPI05G02870 vs. NCBI nr
Match: XP_022922251.1 (uncharacterized protein LOC111430288 [Cucurbita moschata])

HSP 1 Score: 70.1 bits (170), Expect = 7.2e-09
Identity = 36/55 (65.45%), Postives = 47/55 (85.45%), Query Frame = 0 

Query: 1  MGMRRIPETGD-RKMVVMVIMVNDALKGAKVVDRTRNRDRSFLIEAILVLGLLQE 55
          MGMRRIP+TGD +KM+ ++I++N AL+  +VVDR R+ DRSFL+EAILV GLLQE
Sbjct: 1  MGMRRIPKTGDGKKMMGVMIVMNYALESTEVVDRARDGDRSFLVEAILVFGLLQE 55

The following BLAST results are available for this feature:
BLAST of CSPI05G02870 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI05G02870 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TGK22.4e-1094.74Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1E3M13.5e-0965.45uncharacterized protein LOC111430288 OS=Cucurbita moschata OX=3662 GN=LOC1114302... [more]
BLAST of CSPI05G02870 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038875258.12.2e-1379.31uncharacterized protein LOC120067761 [Benincasa hispida][more]
KAA0042524.15.0e-1094.74hypothetical protein E6C27_scaffold44G00170 [Cucumis melo var. makuwa] >TYK05927... [more]
XP_022922251.17.2e-0965.45uncharacterized protein LOC111430288 [Cucurbita moschata][more]
BLAST of CSPI05G02870 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G02870.1CSPI05G02870.1mRNA