CSPI04G25180 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI04G25180
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionCRG16
LocationChr4: 22699183 .. 22699569 (+)
RNA-Seq ExpressionCSPI04G25180
SyntenyCSPI04G25180
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAGCTTTGTAATTCCGCCATCTCCTCCACTCCTTTCTTTCTCTCCTCTCTCTCTCTATTATATAAACACTCCCACCTTTCTCTTTCTCCGCTGCCAAACCTTCCATTCCTTTTTCTCACTTACTATTCTTTCTTTCTTTCTTTCAAAACCCTACTTTCTTCTCTCTTTTTTTTGGAAGCTACCAATGGCCGCCGTCTCTAAGGTTTCTTTCATGGCTCTTGTTGCCGTTTTGTTCGCCGTCCTCGCCGTTGCTGTTGCACAATCTGCAGAGTCTCCTGCTCCCCCTCCGGCTTCTCCGGCTAACTCTGTCGTTCCTTCCTTGAGCTTTGCTTGTGTTGGTGCTTTCCTTGCTCTTCTCTTTGGATCTGCACTCAAGGCTTGA

mRNA sequence

ATGGCCAGCTTTGTAATTCCGCCATCTCCTCCACTCCTTTCTTTCTCTCCTCTCTCTCTCTATTATATAAACACTCCCACCTTTCTCTTTCTCCGCTGCCAAACCTTCCATTCCTTTTTCTCACTTACTATTCTTTCTTTCTTTCTTTCAAAACCCTACTTTCTTCTCTCTTTTTTTTGGAAGCTACCAATGGCCGCCGTCTCTAAGGTTTCTTTCATGGCTCTTGTTGCCGTTTTGTTCGCCGTCCTCGCCGTTGCTGTTGCACAATCTGCAGAGTCTCCTGCTCCCCCTCCGGCTTCTCCGGCTAACTCTGTCGTTCCTTCCTTGAGCTTTGCTTGTGTTGGTGCTTTCCTTGCTCTTCTCTTTGGATCTGCACTCAAGGCTTGA

Coding sequence (CDS)

ATGGCCAGCTTTGTAATTCCGCCATCTCCTCCACTCCTTTCTTTCTCTCCTCTCTCTCTCTATTATATAAACACTCCCACCTTTCTCTTTCTCCGCTGCCAAACCTTCCATTCCTTTTTCTCACTTACTATTCTTTCTTTCTTTCTTTCAAAACCCTACTTTCTTCTCTCTTTTTTTTGGAAGCTACCAATGGCCGCCGTCTCTAAGGTTTCTTTCATGGCTCTTGTTGCCGTTTTGTTCGCCGTCCTCGCCGTTGCTGTTGCACAATCTGCAGAGTCTCCTGCTCCCCCTCCGGCTTCTCCGGCTAACTCTGTCGTTCCTTCCTTGAGCTTTGCTTGTGTTGGTGCTTTCCTTGCTCTTCTCTTTGGATCTGCACTCAAGGCTTGA

Protein sequence

MASFVIPPSPPLLSFSPLSLYYINTPTFLFLRCQTFHSFFSLTILSFFLSKPYFLLSFFWKLPMAAVSKVSFMALVAVLFAVLAVAVAQSAESPAPPPASPANSVVPSLSFACVGAFLALLFGSALKA*
Homology
BLAST of CSPI04G25180 vs. ExPASy TrEMBL
Match: Q96504 (CRG16 OS=Cucumis sativus OX=3659 GN=Csa_4G645890 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 6.7e-21
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 0

Query: 64  MAAVSKVSFMALVAVLFAVLAVAVAQSAESPAPPPASPANSVVPSLSFACVGAFLALLFG 123
           MAAVSKVSFMALVAVLFAVL+VAVAQSAESPAPPPASPANSVVPSLSFACVGAFLALLFG
Sbjct: 1   MAAVSKVSFMALVAVLFAVLSVAVAQSAESPAPPPASPANSVVPSLSFACVGAFLALLFG 60

Query: 124 SALKA 129
           SALKA
Sbjct: 61  SALKA 65

BLAST of CSPI04G25180 vs. ExPASy TrEMBL
Match: A0A0A0LKU1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351840 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 9.4e-07
Identity = 47/97 (48.45%), Postives = 64/97 (65.98%), Query Frame = 0

Query: 38  SFFSLTILSFFLS-------KPYFLLSFFWKLPMAAVSKVSFMALVAVLFAVLAVAVAQS 97
           SF + T+LS  LS       +P++L       PMAA+SKVS +AL+A++FA+ +VA   +
Sbjct: 39  SFPNQTVLSSLLSPASTLTPRPHYLF-----YPMAALSKVSLLALIALIFALSSVA---A 98

Query: 98  AESPAPPPASPANSVVPSLSFACVGAFLALLFGSALK 128
            E+PAP PASPA S+ PS   AC+ AFLAL FGS L+
Sbjct: 99  QEAPAPSPASPATSIAPSAVSACLAAFLALAFGSTLR 127

BLAST of CSPI04G25180 vs. NCBI nr
Match: KGN55315.1 (hypothetical protein Csa_012200 [Cucumis sativus] >BAA08394.1 CRG16 [Cucumis sativus] >BAA11428.1 CRG16 [Cucumis sativus])

HSP 1 Score: 110.2 bits (274), Expect = 1.4e-20
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 0

Query: 64  MAAVSKVSFMALVAVLFAVLAVAVAQSAESPAPPPASPANSVVPSLSFACVGAFLALLFG 123
           MAAVSKVSFMALVAVLFAVL+VAVAQSAESPAPPPASPANSVVPSLSFACVGAFLALLFG
Sbjct: 1   MAAVSKVSFMALVAVLFAVLSVAVAQSAESPAPPPASPANSVVPSLSFACVGAFLALLFG 60

Query: 124 SALKA 129
           SALKA
Sbjct: 61  SALKA 65

BLAST of CSPI04G25180 vs. NCBI nr
Match: KAG6591454.1 (hypothetical protein SDJN03_13800, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 95.5 bits (236), Expect = 3.5e-16
Identity = 56/65 (86.15%), Postives = 60/65 (92.31%), Query Frame = 0

Query: 64  MAAVSKVSFMALVAVLFAVLAVAVAQSAESPAPPPASPANSVVPSLSFACVGAFLALLFG 123
           MAAVSK SFMALVAVLF V++VAVAQSAESPAP PASPA SVVPSLS ACVGAF+AL+FG
Sbjct: 28  MAAVSKTSFMALVAVLFTVVSVAVAQSAESPAPAPASPATSVVPSLSVACVGAFVALVFG 87

Query: 124 SALKA 129
           SALKA
Sbjct: 88  SALKA 92

BLAST of CSPI04G25180 vs. NCBI nr
Match: KAG7024335.1 (hypothetical protein SDJN02_13149, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 94.0 bits (232), Expect = 1.0e-15
Identity = 59/75 (78.67%), Postives = 64/75 (85.33%), Query Frame = 0

Query: 54  FLLSFFWKLPMAAVSKVSFMALVAVLFAVLAVAVAQSAESPAPPPASPANSVVPSLSFAC 113
           FLL+      MAAVSK SFMALVAVLF V++VAVAQSAESPAP PASPA SVVPSLS AC
Sbjct: 14  FLLTLEIFRAMAAVSKTSFMALVAVLFTVVSVAVAQSAESPAPAPASPATSVVPSLSVAC 73

Query: 114 VGAFLALLFGSALKA 129
           VGAF+AL+FGSALKA
Sbjct: 74  VGAFVALVFGSALKA 88

BLAST of CSPI04G25180 vs. NCBI nr
Match: KGN62403.1 (hypothetical protein Csa_018595 [Cucumis sativus])

HSP 1 Score: 63.2 bits (152), Expect = 1.9e-06
Identity = 47/97 (48.45%), Postives = 64/97 (65.98%), Query Frame = 0

Query: 38  SFFSLTILSFFLS-------KPYFLLSFFWKLPMAAVSKVSFMALVAVLFAVLAVAVAQS 97
           SF + T+LS  LS       +P++L       PMAA+SKVS +AL+A++FA+ +VA   +
Sbjct: 39  SFPNQTVLSSLLSPASTLTPRPHYLF-----YPMAALSKVSLLALIALIFALSSVA---A 98

Query: 98  AESPAPPPASPANSVVPSLSFACVGAFLALLFGSALK 128
            E+PAP PASPA S+ PS   AC+ AFLAL FGS L+
Sbjct: 99  QEAPAPSPASPATSIAPSAVSACLAAFLALAFGSTLR 127

BLAST of CSPI04G25180 vs. NCBI nr
Match: KAG6598305.1 (hypothetical protein SDJN03_08083, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 60.5 bits (145), Expect = 1.3e-05
Identity = 36/64 (56.25%), Postives = 47/64 (73.44%), Query Frame = 0

Query: 64  MAAVSKVSFMALVAVLFAVLAVAVAQSAESPAPPPASPANSVVPSLSFACVGAFLALLFG 123
           MA VS+ S +AL+A++FAV +VA   + E+PAP PASPA S+ PS   ACV AF+AL FG
Sbjct: 68  MAGVSQASLVALIAIVFAVASVA---ATEAPAPSPASPATSIAPSFVSACVAAFVALAFG 127

Query: 124 SALK 128
           S L+
Sbjct: 128 STLR 128

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Q965046.7e-2198.46CRG16 OS=Cucumis sativus OX=3659 GN=Csa_4G645890 PE=2 SV=1[more]
A0A0A0LKU19.4e-0748.45Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351840 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KGN55315.11.4e-2098.46hypothetical protein Csa_012200 [Cucumis sativus] >BAA08394.1 CRG16 [Cucumis sat... [more]
KAG6591454.13.5e-1686.15hypothetical protein SDJN03_13800, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7024335.11.0e-1578.67hypothetical protein SDJN02_13149, partial [Cucurbita argyrosperma subsp. argyro... [more]
KGN62403.11.9e-0648.45hypothetical protein Csa_018595 [Cucumis sativus][more]
KAG6598305.11.3e-0556.25hypothetical protein SDJN03_08083, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G25180.1CSPI04G25180.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane