CSPI04G24830 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G24830
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	LIM domain-containing protein WLIM1
Location	Chr4: 22433119 .. 22434664 (+)
RNA-Seq Expression	CSPI04G24830
Synteny	CSPI04G24830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCAATTTAATTCAAAGAAATAAGGGGGGAAGTGGGGAAAAAAATCAAAGGGAGAGAGAGAGGGATGGTTGGTTGGGTTGGATGCTTGCAAATCCAGACAAATTGATTACCATTTATGCCCTTCAACTTTAGATTTGTCTACTTGAATCTCTCTTATACATACACCCATATCTTTTGCATCCATAGCCCAATTTCTATCTCTCTGCCCTCTTCCTTATCTCCTTCACATTGTCTTCTTCTTCCTCCTAACACCGACTCAAATTTCAACACCAAGAAACTATAGGATTCTTTTGCAATTGCTATGGCTTTTGCAGGAACCACCCAGAAATGCATGGCCTGCGACAAAACTGTCTATTTAGTAGACAAACTTACTGCTGACAATCGTGTCTACCACAAAGCTTGCTTCCGCTGTCACCACTGCAATGGAACCCTCAAGGTAAATCAAATCTCTGATCTGTTATGTCGTTTCAGTGTAATCAGATTTCAGATCGCTAATTGGAAAGATTATTTTTGGTGGGTTGTGGTTAAAATCAAACGAGATCTGATTTGCAGTTAAGTAATTACAATTCGTTTGAAGGAGTGCTTTACTGTCGGCCACACTTTGATCAGCTCTTTAAAAGAACTGGAAGCTTAGACAAGAGCTTTGAAGGTATTTAAAATTATGAGAAATTTTCGCTTTAAAGTCATTTCTCATTAGATCAAACCAACAACATTCTTATCTTGATTTTAGGAACACCAAAGATTGGAAAACCGGAGAAACCGGGTGATTCTGAGGTAGCTAATTAATTGTATCATGCTTTGTTATGCTCTGTTTTGTGTTAATTTCAACTTAAAATACATATTTGTCAGAAACCAACAGCGACTAAGGTTGCAAGTATGTTCGTCGGTACTAAAGATAAGTGTCTTGGATGTAACAAGACTGTTTATCCAACTGAGAAGGTAAATTTGAGGTGAAATTTAACTTTGTAAATGAAGAAAGCTCTGTTTTGAAGTGGGTAAACTTTAACATCATAATTTTTCAGGTTTCAGTAAATGGAACTTCGTACCATAAGAGCTGTTTCAAGTGCTGCCATGGCGGATGTACAATCAGCCCATCGAATTACATTGCACATGAAGGACGACTTTACTGCAAACATCACCATACCCAACTCATCAAAGAGAAAGGAAACTTGAGCCAGCTGGAAGGAAGCCATTAAAGAACCTTACACTCGTAGGCCTTGTTTTTCATTTTTTTCTTTTTTCTTTTTTTTATGTCCTCTGCTTTCTTCCTTATTTTAGTCCTGCTTTTACGCTGTTCCCTTTTTGAACTTTAGCACCTCTCTCTTTGAAATTTGAATTGTAAAACAAAAGAAGTAATCGTGTGGGTCTCCCTCTGATTTTCGTTTTGGTTGGTGAATTCAAATAAAACTTGCAAGTAAAAGGCCAACGTATTAATTGATCATCCGTTATTTAATCACACATCAACATGCTCCAAAAGAGGCCGTTTGTTAATTTGTCCATCTCTGGACGTCACAAATTACAATACAACAGCTGTTGAAATTTCAAC

mRNA sequence

AGCAATTTAATTCAAAGAAATAAGGGGGGAAGTGGGGAAAAAAATCAAAGGGAGAGAGAGAGGGATGGTTGGTTGGGTTGGATGCTTGCAAATCCAGACAAATTGATTACCATTTATGCCCTTCAACTTTAGATTTGTCTACTTGAATCTCTCTTATACATACACCCATATCTTTTGCATCCATAGCCCAATTTCTATCTCTCTGCCCTCTTCCTTATCTCCTTCACATTGTCTTCTTCTTCCTCCTAACACCGACTCAAATTTCAACACCAAGAAACTATAGGATTCTTTTGCAATTGCTATGGCTTTTGCAGGAACCACCCAGAAATGCATGGCCTGCGACAAAACTGTCTATTTAGTAGACAAACTTACTGCTGACAATCGTGTCTACCACAAAGCTTGCTTCCGCTGTCACCACTGCAATGGAACCCTCAAGTTAAGTAATTACAATTCGTTTGAAGGAGTGCTTTACTGTCGGCCACACTTTGATCAGCTCTTTAAAAGAACTGGAAGCTTAGACAAGAGCTTTGAAGGAACACCAAAGATTGGAAAACCGGAGAAACCGGGTGATTCTGAGAAACCAACAGCGACTAAGGTTGCAAGTATGTTCGTCGGTACTAAAGATAAGTGTCTTGGATGTAACAAGACTGTTTATCCAACTGAGAAGGTTTCAGTAAATGGAACTTCGTACCATAAGAGCTGTTTCAAGTGCTGCCATGGCGGATGTACAATCAGCCCATCGAATTACATTGCACATGAAGGACGACTTTACTGCAAACATCACCATACCCAACTCATCAAAGAGAAAGGAAACTTGAGCCAGCTGGAAGGAAGCCATTAAAGAACCTTACACTCGTAGGCCTTGTTTTTCATTTTTTTCTTTTTTCTTTTTTTTATGTCCTCTGCTTTCTTCCTTATTTTAGTCCTGCTTTTACGCTGTTCCCTTTTTGAACTTTAGCACCTCTCTCTTTGAAATTTGAATTGTAAAACAAAAGAAGTAATCGTGTGGGTCTCCCTCTGATTTTCGTTTTGGTTGGTGAATTCAAATAAAACTTGCAAGTAAAAGGCCAACGTATTAATTGATCATCCGTTATTTAATCACACATCAACATGCTCCAAAAGAGGCCGTTTGTTAATTTGTCCATCTCTGGACGTCACAAATTACAATACAACAGCTGTTGAAATTTCAAC

Coding sequence (CDS)

ATGGCTTTTGCAGGAACCACCCAGAAATGCATGGCCTGCGACAAAACTGTCTATTTAGTAGACAAACTTACTGCTGACAATCGTGTCTACCACAAAGCTTGCTTCCGCTGTCACCACTGCAATGGAACCCTCAAGTTAAGTAATTACAATTCGTTTGAAGGAGTGCTTTACTGTCGGCCACACTTTGATCAGCTCTTTAAAAGAACTGGAAGCTTAGACAAGAGCTTTGAAGGAACACCAAAGATTGGAAAACCGGAGAAACCGGGTGATTCTGAGAAACCAACAGCGACTAAGGTTGCAAGTATGTTCGTCGGTACTAAAGATAAGTGTCTTGGATGTAACAAGACTGTTTATCCAACTGAGAAGGTTTCAGTAAATGGAACTTCGTACCATAAGAGCTGTTTCAAGTGCTGCCATGGCGGATGTACAATCAGCCCATCGAATTACATTGCACATGAAGGACGACTTTACTGCAAACATCACCATACCCAACTCATCAAAGAGAAAGGAAACTTGAGCCAGCTGGAAGGAAGCCATTAA

Protein sequence

MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIGKPEKPGDSEKPTATKVASMFVGTKDKCLGCNKTVYPTEKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH*

Homology

[Close]

BLAST of CSPI04G24830 vs. ExPASy Swiss-Prot
Match: Q94JX5 (LIM domain-containing protein WLIM1 OS=Arabidopsis thaliana OX=3702 GN=WLIM1 PE=1 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 1.8e-93
Identity = 154/177 (87.01%), Postives = 166/177 (93.79%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHC GTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPGDSEKPTATKVASMFVGTKDKCLGCNKTVYPT 120
           HFDQ FKRTGSL+KSFEGTPKIGKP++P + E+P  TKV++MF GT++KC+GC+KTVYP 
Sbjct: 61  HFDQNFKRTGSLEKSFEGTPKIGKPDRPLEGERPAGTKVSNMFGGTREKCVGCDKTVYPI 120

Query: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEG 178
           EKVSVNGT YHKSCFKC HGGCTISPSNYIAHEG+LYCKHHH QLIKEKGNLSQLEG
Sbjct: 121 EKVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLEG 177

[Close]

BLAST of CSPI04G24830 vs. ExPASy Swiss-Prot
Match: P29675 (Pollen-specific protein SF3 OS=Helianthus annuus OX=4232 GN=SF3 PE=2 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 2.3e-77
Identity = 128/175 (73.14%), Postives = 148/175 (84.57%), Query Frame = 0


Query: 2   AFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRPH 61
           +F GTTQKC  C+KTVYLVDKL A+ RVYHKACFRCHHCN TLKLSN+NSF+GV+YCR H
Sbjct: 3   SFTGTTQKCTVCEKTVYLVDKLVANQRVYHKACFRCHHCNSTLKLSNFNSFDGVVYCRHH 62

Query: 62  FDQLFKRTGSLDKSFEGTPKIGKPEKPGDSEKPTATKVASMFVGTKDKCLGCNKTVYPTE 121
           FDQLFKRTGSL+KSF+GTPK  KPE+    E  +A +++S F GT+DKC  C K VYP E
Sbjct: 63  FDQLFKRTGSLEKSFDGTPKF-KPERTFSQETQSANRLSSFFEGTRDKCNACAKIVYPIE 122

Query: 122 KVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLE 177
           +V V+GT+YH++CFKCCHGGCTISPSNYIAHEGRLYCKHHH QL K+KGN SQLE
Sbjct: 123 RVKVDGTAYHRACFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLFKKKGNYSQLE 176

[Close]

BLAST of CSPI04G24830 vs. ExPASy Swiss-Prot
Match: O04193 (LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A PE=1 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 8.4e-59
Identity = 105/175 (60.00%), Postives = 126/175 (72.00%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60
           M+F GT QKC AC+KTVY V+ L+AD   YHKACF+C HC   L+LSNY+S EGV+YCRP
Sbjct: 1   MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPGDSEKPTATKVASMFVGTKDKCLGCNKTVYPT 120
           HF+QLFK +GS  K+F+ +P     +KP      T +++A MF GT+DKC  C KTVYP 
Sbjct: 61  HFEQLFKESGSFSKNFQ-SPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPI 120

Query: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQL 176
           EKV+V    YHKSCFKC HGGC ISPSNY A EG LYCKHH  QL KEKG+ + L
Sbjct: 121 EKVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 174

[Close]

BLAST of CSPI04G24830 vs. ExPASy Swiss-Prot
Match: Q9M047 (LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B PE=1 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 3.5e-57
Identity = 103/179 (57.54%), Postives = 127/179 (70.95%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60
           M+F GT QKC AC+KTVY V+ L+AD   YHK+CF+C HC   L+LS+Y+S EGVLYC+P
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPGDSEKP----TATKVASMFVGTKDKCLGCNKT 120
           HF+QLFK +GS +K+F+       P K  D   P    T ++VA  F GT++KC  C+KT
Sbjct: 61  HFEQLFKESGSFNKNFQ------SPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKT 120

Query: 121 VYPTEKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQL 176
           VYP EKV+V   +YHKSCFKC HGGC ISPSNY A EG LYCKHH  QL KEKG+ + L
Sbjct: 121 VYPIEKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 173

[Close]

BLAST of CSPI04G24830 vs. ExPASy Swiss-Prot
Match: O80839 (LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A PE=1 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 4.3e-55
Identity = 95/175 (54.29%), Postives = 124/175 (70.86%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60
           M+F GT  KC ACDKTVY++D LT +   YHK+CFRC HC GTL +SNY+S +GVLYC+P
Sbjct: 1   MSFTGTLDKCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPGDSEKPTATKVASMFVGTKDKCLGCNKTVYPT 120
           HF+QLFK +G+  K+F+     GK EKP D    T +K++S F GT+DKC  C KTVYP 
Sbjct: 61  HFEQLFKESGNYSKNFQA----GKTEKPNDHLTRTPSKLSSFFSGTQDKCATCKKTVYPL 120

Query: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQL 176
           EKV++ G SYHK+CF+C H GC ++ S+Y +  G LYCK H  QL  EKG+ + +
Sbjct: 121 EKVTMEGESYHKTCFRCTHSGCPLTHSSYASLNGVLYCKVHFNQLFLEKGSYNHV 171

[Close]

BLAST of CSPI04G24830 vs. ExPASy TrEMBL
Match: A0A0A0L3T9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G643070 PE=4 SV=1)

HSP 1 Score: 390.6 bits (1002), Expect = 3.6e-105
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPGDSEKPTATKVASMFVGTKDKCLGCNKTVYPT 120
           HFDQLFKRTGSLDKSFEGTPKIGKPEKPGDSEKPTATKVASMFVGTKDKCLGCNKTVYPT
Sbjct: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPGDSEKPTATKVASMFVGTKDKCLGCNKTVYPT 120

Query: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 180
           EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH
Sbjct: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 179

[Close]

BLAST of CSPI04G24830 vs. ExPASy TrEMBL
Match: A0A5A7VG01 (LIM domain-containing protein WLIM1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G001620 PE=4 SV=1)

HSP 1 Score: 390.2 bits (1001), Expect = 4.7e-105
Identity = 178/179 (99.44%), Postives = 179/179 (100.00%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPGDSEKPTATKVASMFVGTKDKCLGCNKTVYPT 120
           HFDQLFKRTGSLDKSFEGTPKIGKPEKPGDSEKPTATKVASMF+GTKDKCLGCNKTVYPT
Sbjct: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPGDSEKPTATKVASMFIGTKDKCLGCNKTVYPT 120

Query: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 180
           EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH
Sbjct: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 179

[Close]

BLAST of CSPI04G24830 vs. ExPASy TrEMBL
Match: A0A1S3BUC8 (LIM domain-containing protein WLIM1 OS=Cucumis melo OX=3656 GN=LOC103493607 PE=4 SV=1)

HSP 1 Score: 390.2 bits (1001), Expect = 4.7e-105
Identity = 178/179 (99.44%), Postives = 179/179 (100.00%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPGDSEKPTATKVASMFVGTKDKCLGCNKTVYPT 120
           HFDQLFKRTGSLDKSFEGTPKIGKPEKPGDSEKPTATKVASMF+GTKDKCLGCNKTVYPT
Sbjct: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPGDSEKPTATKVASMFIGTKDKCLGCNKTVYPT 120

Query: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 180
           EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH
Sbjct: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 179

[Close]

BLAST of CSPI04G24830 vs. ExPASy TrEMBL
Match: A0A5D3D9H2 (LIM domain-containing protein WLIM1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002660 PE=4 SV=1)

HSP 1 Score: 387.1 bits (993), Expect = 4.0e-104
Identity = 177/179 (98.88%), Postives = 178/179 (99.44%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPGDSEKPTATKVASMFVGTKDKCLGCNKTVYPT 120
           HFDQLFKRTGSLDKSFEGTPKI KPEKPGDSEKPTATKVASMF+GTKDKCLGCNKTVYPT
Sbjct: 61  HFDQLFKRTGSLDKSFEGTPKIEKPEKPGDSEKPTATKVASMFIGTKDKCLGCNKTVYPT 120

Query: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 180
           EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH
Sbjct: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 179

[Close]

BLAST of CSPI04G24830 vs. ExPASy TrEMBL
Match: A0A6J1FCP1 (LIM domain-containing protein WLIM1 OS=Cucurbita moschata OX=3662 GN=LOC111442805 PE=4 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 1.4e-101
Identity = 173/179 (96.65%), Postives = 174/179 (97.21%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHC GTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPGDSEKPTATKVASMFVGTKDKCLGCNKTVYPT 120
           HFDQLFKRTGSLDKSFEGTPKIGKPEKP DSE+PTATKVASMFVGTKDKCLGC  TVYPT
Sbjct: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSERPTATKVASMFVGTKDKCLGCKNTVYPT 120

Query: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 180
           EKVSVNGT YHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH
Sbjct: 121 EKVSVNGTPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 179

[Close]

BLAST of CSPI04G24830 vs. NCBI nr
Match: XP_004141291.1 (LIM domain-containing protein WLIM1 [Cucumis sativus] >KGN55277.1 hypothetical protein Csa_012962 [Cucumis sativus])

HSP 1 Score: 390.6 bits (1002), Expect = 7.4e-105
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPGDSEKPTATKVASMFVGTKDKCLGCNKTVYPT 120
           HFDQLFKRTGSLDKSFEGTPKIGKPEKPGDSEKPTATKVASMFVGTKDKCLGCNKTVYPT
Sbjct: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPGDSEKPTATKVASMFVGTKDKCLGCNKTVYPT 120

Query: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 180
           EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH
Sbjct: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 179

[Close]

BLAST of CSPI04G24830 vs. NCBI nr
Match: XP_008452649.1 (PREDICTED: LIM domain-containing protein WLIM1 [Cucumis melo] >KAA0064449.1 LIM domain-containing protein WLIM1 [Cucumis melo var. makuwa])

HSP 1 Score: 390.2 bits (1001), Expect = 9.7e-105
Identity = 178/179 (99.44%), Postives = 179/179 (100.00%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPGDSEKPTATKVASMFVGTKDKCLGCNKTVYPT 120
           HFDQLFKRTGSLDKSFEGTPKIGKPEKPGDSEKPTATKVASMF+GTKDKCLGCNKTVYPT
Sbjct: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPGDSEKPTATKVASMFIGTKDKCLGCNKTVYPT 120

Query: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 180
           EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH
Sbjct: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 179

[Close]

BLAST of CSPI04G24830 vs. NCBI nr
Match: TYK20140.1 (LIM domain-containing protein WLIM1 [Cucumis melo var. makuwa])

HSP 1 Score: 387.1 bits (993), Expect = 8.2e-104
Identity = 177/179 (98.88%), Postives = 178/179 (99.44%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPGDSEKPTATKVASMFVGTKDKCLGCNKTVYPT 120
           HFDQLFKRTGSLDKSFEGTPKI KPEKPGDSEKPTATKVASMF+GTKDKCLGCNKTVYPT
Sbjct: 61  HFDQLFKRTGSLDKSFEGTPKIEKPEKPGDSEKPTATKVASMFIGTKDKCLGCNKTVYPT 120

Query: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 180
           EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH
Sbjct: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 179

[Close]

BLAST of CSPI04G24830 vs. NCBI nr
Match: XP_038900157.1 (LIM domain-containing protein WLIM1 [Benincasa hispida])

HSP 1 Score: 380.9 bits (977), Expect = 5.9e-102
Identity = 174/179 (97.21%), Postives = 175/179 (97.77%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPGDSEKPTATKVASMFVGTKDKCLGCNKTVYPT 120
           HFDQLFKRTGSLDKSFEGTPKIGKPEKP DSEKP ATK+ASMFVGTKDKCLGC  TVYPT
Sbjct: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSEKPAATKLASMFVGTKDKCLGCKNTVYPT 120

Query: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 180
           EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH
Sbjct: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 179

[Close]

BLAST of CSPI04G24830 vs. NCBI nr
Match: KAG6591426.1 (LIM domain-containing protein WLIM1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 380.6 bits (976), Expect = 7.7e-102
Identity = 174/179 (97.21%), Postives = 175/179 (97.77%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHC GTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPGDSEKPTATKVASMFVGTKDKCLGCNKTVYPT 120
           HFDQLFKRTGSLDKSFEGTPKIGKPEKP DSE+PTATKVASMFVGTKDKCLGC  TVYPT
Sbjct: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSERPTATKVASMFVGTKDKCLGCKNTVYPT 120

Query: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 180
           EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH
Sbjct: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 179

[Close]

BLAST of CSPI04G24830 vs. TAIR 10
Match: AT1G10200.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 343.2 bits (879), Expect = 1.3e-94
Identity = 154/177 (87.01%), Postives = 166/177 (93.79%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHC GTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPGDSEKPTATKVASMFVGTKDKCLGCNKTVYPT 120
           HFDQ FKRTGSL+KSFEGTPKIGKP++P + E+P  TKV++MF GT++KC+GC+KTVYP 
Sbjct: 61  HFDQNFKRTGSLEKSFEGTPKIGKPDRPLEGERPAGTKVSNMFGGTREKCVGCDKTVYPI 120

Query: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEG 178
           EKVSVNGT YHKSCFKC HGGCTISPSNYIAHEG+LYCKHHH QLIKEKGNLSQLEG
Sbjct: 121 EKVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLEG 177

[Close]

BLAST of CSPI04G24830 vs. TAIR 10
Match: AT2G39900.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 228.0 bits (580), Expect = 5.9e-60
Identity = 105/175 (60.00%), Postives = 126/175 (72.00%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60
           M+F GT QKC AC+KTVY V+ L+AD   YHKACF+C HC   L+LSNY+S EGV+YCRP
Sbjct: 1   MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPGDSEKPTATKVASMFVGTKDKCLGCNKTVYPT 120
           HF+QLFK +GS  K+F+ +P     +KP      T +++A MF GT+DKC  C KTVYP 
Sbjct: 61  HFEQLFKESGSFSKNFQ-SPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPI 120

Query: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQL 176
           EKV+V    YHKSCFKC HGGC ISPSNY A EG LYCKHH  QL KEKG+ + L
Sbjct: 121 EKVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 174

[Close]

BLAST of CSPI04G24830 vs. TAIR 10
Match: AT3G55770.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 222.6 bits (566), Expect = 2.5e-58
Identity = 103/179 (57.54%), Postives = 127/179 (70.95%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60
           M+F GT QKC AC+KTVY V+ L+AD   YHK+CF+C HC   L+LS+Y+S EGVLYC+P
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPGDSEKP----TATKVASMFVGTKDKCLGCNKT 120
           HF+QLFK +GS +K+F+       P K  D   P    T ++VA  F GT++KC  C+KT
Sbjct: 61  HFEQLFKESGSFNKNFQ------SPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKT 120

Query: 121 VYPTEKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQL 176
           VYP EKV+V   +YHKSCFKC HGGC ISPSNY A EG LYCKHH  QL KEKG+ + L
Sbjct: 121 VYPIEKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 173

[Close]

BLAST of CSPI04G24830 vs. TAIR 10
Match: AT3G55770.2 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 222.6 bits (566), Expect = 2.5e-58
Identity = 103/179 (57.54%), Postives = 127/179 (70.95%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60
           M+F GT QKC AC+KTVY V+ L+AD   YHK+CF+C HC   L+LS+Y+S EGVLYC+P
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPGDSEKP----TATKVASMFVGTKDKCLGCNKT 120
           HF+QLFK +GS +K+F+       P K  D   P    T ++VA  F GT++KC  C+KT
Sbjct: 61  HFEQLFKESGSFNKNFQ------SPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKT 120

Query: 121 VYPTEKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQL 176
           VYP EKV+V   +YHKSCFKC HGGC ISPSNY A EG LYCKHH  QL KEKG+ + L
Sbjct: 121 VYPIEKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 173

[Close]

BLAST of CSPI04G24830 vs. TAIR 10
Match: AT3G55770.3 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 222.6 bits (566), Expect = 2.5e-58
Identity = 103/179 (57.54%), Postives = 127/179 (70.95%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60
           M+F GT QKC AC+KTVY V+ L+AD   YHK+CF+C HC   L+LS+Y+S EGVLYC+P
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPGDSEKP----TATKVASMFVGTKDKCLGCNKT 120
           HF+QLFK +GS +K+F+       P K  D   P    T ++VA  F GT++KC  C+KT
Sbjct: 61  HFEQLFKESGSFNKNFQ------SPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKT 120

Query: 121 VYPTEKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQL 176
           VYP EKV+V   +YHKSCFKC HGGC ISPSNY A EG LYCKHH  QL KEKG+ + L
Sbjct: 121 VYPIEKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 173

The following BLAST results are available for this feature:

BLAST of CSPI04G24830 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94JX5	1.8e-93	87.01	LIM domain-containing protein WLIM1 OS=Arabidopsis thaliana OX=3702 GN=WLIM1 PE=...	[more]
P29675	2.3e-77	73.14	Pollen-specific protein SF3 OS=Helianthus annuus OX=4232 GN=SF3 PE=2 SV=1	[more]
O04193	8.4e-59	60.00	LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A P...	[more]
Q9M047	3.5e-57	57.54	LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B P...	[more]
O80839	4.3e-55	54.29	LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A P...	[more]

BLAST of CSPI04G24830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3T9	3.6e-105	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G643070 PE=4 SV=1	[more]
A0A5A7VG01	4.7e-105	99.44	LIM domain-containing protein WLIM1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A1S3BUC8	4.7e-105	99.44	LIM domain-containing protein WLIM1 OS=Cucumis melo OX=3656 GN=LOC103493607 PE=4...	[more]
A0A5D3D9H2	4.0e-104	98.88	LIM domain-containing protein WLIM1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A6J1FCP1	1.4e-101	96.65	LIM domain-containing protein WLIM1 OS=Cucurbita moschata OX=3662 GN=LOC11144280...	[more]

BLAST of CSPI04G24830 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004141291.1	7.4e-105	100.00	LIM domain-containing protein WLIM1 [Cucumis sativus] >KGN55277.1 hypothetical p...	[more]
XP_008452649.1	9.7e-105	99.44	PREDICTED: LIM domain-containing protein WLIM1 [Cucumis melo] >KAA0064449.1 LIM ...	[more]
TYK20140.1	8.2e-104	98.88	LIM domain-containing protein WLIM1 [Cucumis melo var. makuwa]	[more]
XP_038900157.1	5.9e-102	97.21	LIM domain-containing protein WLIM1 [Benincasa hispida]	[more]
KAG6591426.1	7.7e-102	97.21	LIM domain-containing protein WLIM1, partial [Cucurbita argyrosperma subsp. soro...	[more]

BLAST of CSPI04G24830 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G10200.1	1.3e-94	87.01	GATA type zinc finger transcription factor family protein	[more]
AT2G39900.1	5.9e-60	60.00	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.1	2.5e-58	57.54	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.2	2.5e-58	57.54	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.3	2.5e-58	57.54	GATA type zinc finger transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001781	Zinc finger, LIM-type	SMART	SM00132	lim_4	coord: 109..161 e-value: 3.4E-13 score: 59.8 coord: 9..61 e-value: 3.2E-11 score: 53.3
IPR001781	Zinc finger, LIM-type	PFAM	PF00412	LIM	coord: 110..164 e-value: 4.4E-12 score: 46.0 coord: 10..64 e-value: 2.0E-10 score: 40.7
IPR001781	Zinc finger, LIM-type	PROSITE	PS00478	LIM_DOMAIN_1	coord: 10..44
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 8..68 score: 13.305699
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 108..168 score: 12.691899
None	No IPR available	GENE3D	2.10.110.10	Cysteine Rich Protein	coord: 104..174 e-value: 2.7E-19 score: 71.1 coord: 4..74 e-value: 1.0E-19 score: 72.4
None	No IPR available	PANTHER	PTHR24206:SF92	GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN	coord: 1..179
None	No IPR available	PANTHER	PTHR24206	OS06G0237300 PROTEIN	coord: 1..179
None	No IPR available	CDD	cd09440	LIM1_SF3	coord: 6..68 e-value: 1.42357E-39 score: 127.196
None	No IPR available	CDD	cd09441	LIM2_SF3	coord: 110..170 e-value: 1.94571E-37 score: 121.809
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 36..76
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 3..35
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 102..135
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 136..175

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G24830.1	CSPI04G24830.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051017	actin filament bundle assembly
cellular_component	GO:0015629	actin cytoskeleton
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0051015	actin filament binding
molecular_function	GO:0046872	metal ion binding