CSPI04G24680 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G24680
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Glycosyl hydrolase family 35 protein
Location	Chr4: 22320985 .. 22321364 (+)
RNA-Seq Expression	CSPI04G24680
Synteny	CSPI04G24680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCCAAACCACCTCCATGTAGAATCAAATGAGTATTTGTTTGCCACACCATCAAACAGGAAGATGAAAGTATGTACTTGCAATCTATATATTATTTTAGAGATGAACATGGCTTCTTTTCCTAAATCACAACTTTATTGCTAATGGGATTGAATTCGGTTTTTGACCCTCAGCTGCAGGATCGCGAGCAAAGTAACCCGACGAGGAAGAATGTTCGTGTGGGTGACGTGAATCTTTACGACTACCACCCCATTGATCCAGTTCCAAGCTCAAAGAGATCCATCAAACATGGACCAATAGAGCATGGCTCTCCTCTTATACCTCATATGCCAAGTCCTTCCCCTCCTGATCAACCACAGCCCGGTGGTTTTGTGTAG

mRNA sequence

ATGGCTCCAAACCACCTCCATGTAGAATCAAATGAGTATTTGTTTGCCACACCATCAAACAGGAAGATGAAACTGCAGGATCGCGAGCAAAGTAACCCGACGAGGAAGAATGTTCGTGTGGGTGACGTGAATCTTTACGACTACCACCCCATTGATCCAGTTCCAAGCTCAAAGAGATCCATCAAACATGGACCAATAGAGCATGGCTCTCCTCTTATACCTCATATGCCAAGTCCTTCCCCTCCTGATCAACCACAGCCCGGTGGTTTTGTGTAG

Coding sequence (CDS)

ATGGCTCCAAACCACCTCCATGTAGAATCAAATGAGTATTTGTTTGCCACACCATCAAACAGGAAGATGAAACTGCAGGATCGCGAGCAAAGTAACCCGACGAGGAAGAATGTTCGTGTGGGTGACGTGAATCTTTACGACTACCACCCCATTGATCCAGTTCCAAGCTCAAAGAGATCCATCAAACATGGACCAATAGAGCATGGCTCTCCTCTTATACCTCATATGCCAAGTCCTTCCCCTCCTGATCAACCACAGCCCGGTGGTTTTGTGTAG

Protein sequence

MAPNHLHVESNEYLFATPSNRKMKLQDREQSNPTRKNVRVGDVNLYDYHPIDPVPSSKRSIKHGPIEHGSPLIPHMPSPSPPDQPQPGGFV*

Homology

[Close]

BLAST of CSPI04G24680 vs. ExPASy TrEMBL
Match: A0A0A0L0G3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G642390 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 5.6e-46
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1   MAPNHLHVESNEYLFATPSNRKMKLQDREQSNPTRKNVRVGDVNLYDYHPIDPVPSSKRS 60
           MAPNHLHVESNEYLFATPSNRKMKLQDREQSNPTRKNVRVGDVNLYDYHPIDPVPSSKRS
Sbjct: 28  MAPNHLHVESNEYLFATPSNRKMKLQDREQSNPTRKNVRVGDVNLYDYHPIDPVPSSKRS 87

Query: 61  IKHGPIEHGSPLIPHMPSPSPPDQPQPGGFV 92
           IKHGPIEHGSPLIPHMPSPSPPDQPQPGGFV
Sbjct: 88  IKHGPIEHGSPLIPHMPSPSPPDQPQPGGFV 118

[Close]

BLAST of CSPI04G24680 vs. ExPASy TrEMBL
Match: A0A5A7V8H4 (Putative Glycosyl hydrolase family 35 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002830 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.3e-42
Identity = 86/91 (94.51%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 1  MAPNHLHVESNEYLFATPSNRKMKLQDREQSNPTRKNVRVGDVNLYDYHPIDPVPSSKRS 60
          MA N+LHVESNEYLFATPSNRKMKLQD EQ NPTRKNVRVGDVNLYDYHPIDPVPSSKRS
Sbjct: 1  MAANNLHVESNEYLFATPSNRKMKLQDSEQRNPTRKNVRVGDVNLYDYHPIDPVPSSKRS 60

Query: 61 IKHGPIEHGSPLIPHMPSPSPPDQPQPGGFV 92
          IKHGPIEHGSPLIPHMP+PSPPDQPQPGGFV
Sbjct: 61 IKHGPIEHGSPLIPHMPNPSPPDQPQPGGFV 91

[Close]

BLAST of CSPI04G24680 vs. ExPASy TrEMBL
Match: A0A1S3BU91 (uncharacterized protein LOC103493594 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103493594 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.3e-42
Identity = 86/91 (94.51%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 1  MAPNHLHVESNEYLFATPSNRKMKLQDREQSNPTRKNVRVGDVNLYDYHPIDPVPSSKRS 60
          MA N+LHVESNEYLFATPSNRKMKLQD EQ NPTRKNVRVGDVNLYDYHPIDPVPSSKRS
Sbjct: 1  MAANNLHVESNEYLFATPSNRKMKLQDSEQRNPTRKNVRVGDVNLYDYHPIDPVPSSKRS 60

Query: 61 IKHGPIEHGSPLIPHMPSPSPPDQPQPGGFV 92
          IKHGPIEHGSPLIPHMP+PSPPDQPQPGGFV
Sbjct: 61 IKHGPIEHGSPLIPHMPNPSPPDQPQPGGFV 91

[Close]

BLAST of CSPI04G24680 vs. ExPASy TrEMBL
Match: A0A1S3BUB3 (uncharacterized protein LOC103493594 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493594 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.3e-42
Identity = 86/91 (94.51%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 1   MAPNHLHVESNEYLFATPSNRKMKLQDREQSNPTRKNVRVGDVNLYDYHPIDPVPSSKRS 60
           MA N+LHVESNEYLFATPSNRKMKLQD EQ NPTRKNVRVGDVNLYDYHPIDPVPSSKRS
Sbjct: 28  MAANNLHVESNEYLFATPSNRKMKLQDSEQRNPTRKNVRVGDVNLYDYHPIDPVPSSKRS 87

Query: 61  IKHGPIEHGSPLIPHMPSPSPPDQPQPGGFV 92
           IKHGPIEHGSPLIPHMP+PSPPDQPQPGGFV
Sbjct: 88  IKHGPIEHGSPLIPHMPNPSPPDQPQPGGFV 118

[Close]

BLAST of CSPI04G24680 vs. ExPASy TrEMBL
Match: A0A6J1IVH6 (uncharacterized protein LOC111480980 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111480980 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 5.5e-33
Identity = 72/91 (79.12%), Postives = 79/91 (86.81%), Query Frame = 0


Query: 1   MAPNHLHVESNEYLFATPSNRKMKLQDREQSNPTRKNVRVGDVNLYDYHPIDPVPSSKRS 60
           M PN  HV SNE L ATPSN+K+KLQD + S+P RKNVRV +VNLYDY PIDPVPSSKRS
Sbjct: 34  MTPNQPHVVSNECLSATPSNKKLKLQDNDDSSPGRKNVRVDNVNLYDYSPIDPVPSSKRS 93

Query: 61  IKHGPIEHGSPLIPHMPSPSPPDQPQPGGFV 92
           IKHGPIEH SPLIP+MP+PSPPDQPQPGGFV
Sbjct: 94  IKHGPIEHRSPLIPYMPNPSPPDQPQPGGFV 124

[Close]

BLAST of CSPI04G24680 vs. NCBI nr
Match: XP_011654146.1 (uncharacterized protein LOC105435308 [Cucumis sativus])

HSP 1 Score: 193.0 bits (489), Expect = 1.2e-45
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1   MAPNHLHVESNEYLFATPSNRKMKLQDREQSNPTRKNVRVGDVNLYDYHPIDPVPSSKRS 60
           MAPNHLHVESNEYLFATPSNRKMKLQDREQSNPTRKNVRVGDVNLYDYHPIDPVPSSKRS
Sbjct: 28  MAPNHLHVESNEYLFATPSNRKMKLQDREQSNPTRKNVRVGDVNLYDYHPIDPVPSSKRS 87

Query: 61  IKHGPIEHGSPLIPHMPSPSPPDQPQPGGFV 92
           IKHGPIEHGSPLIPHMPSPSPPDQPQPGGFV
Sbjct: 88  IKHGPIEHGSPLIPHMPSPSPPDQPQPGGFV 118

[Close]

BLAST of CSPI04G24680 vs. NCBI nr
Match: XP_008452634.1 (PREDICTED: uncharacterized protein LOC103493594 isoform X1 [Cucumis melo])

HSP 1 Score: 181.8 bits (460), Expect = 2.7e-42
Identity = 86/91 (94.51%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 1   MAPNHLHVESNEYLFATPSNRKMKLQDREQSNPTRKNVRVGDVNLYDYHPIDPVPSSKRS 60
           MA N+LHVESNEYLFATPSNRKMKLQD EQ NPTRKNVRVGDVNLYDYHPIDPVPSSKRS
Sbjct: 28  MAANNLHVESNEYLFATPSNRKMKLQDSEQRNPTRKNVRVGDVNLYDYHPIDPVPSSKRS 87

Query: 61  IKHGPIEHGSPLIPHMPSPSPPDQPQPGGFV 92
           IKHGPIEHGSPLIPHMP+PSPPDQPQPGGFV
Sbjct: 88  IKHGPIEHGSPLIPHMPNPSPPDQPQPGGFV 118

[Close]

BLAST of CSPI04G24680 vs. NCBI nr
Match: XP_008452635.1 (PREDICTED: uncharacterized protein LOC103493594 isoform X2 [Cucumis melo] >KAA0064433.1 putative Glycosyl hydrolase family 35 protein [Cucumis melo var. makuwa] >TYK20155.1 putative Glycosyl hydrolase family 35 protein [Cucumis melo var. makuwa])

HSP 1 Score: 181.8 bits (460), Expect = 2.7e-42
Identity = 86/91 (94.51%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 1  MAPNHLHVESNEYLFATPSNRKMKLQDREQSNPTRKNVRVGDVNLYDYHPIDPVPSSKRS 60
          MA N+LHVESNEYLFATPSNRKMKLQD EQ NPTRKNVRVGDVNLYDYHPIDPVPSSKRS
Sbjct: 1  MAANNLHVESNEYLFATPSNRKMKLQDSEQRNPTRKNVRVGDVNLYDYHPIDPVPSSKRS 60

Query: 61 IKHGPIEHGSPLIPHMPSPSPPDQPQPGGFV 92
          IKHGPIEHGSPLIPHMP+PSPPDQPQPGGFV
Sbjct: 61 IKHGPIEHGSPLIPHMPNPSPPDQPQPGGFV 91

[Close]

BLAST of CSPI04G24680 vs. NCBI nr
Match: XP_038897195.1 (uncharacterized protein LOC120085331 [Benincasa hispida])

HSP 1 Score: 166.8 bits (421), Expect = 8.9e-38
Identity = 79/91 (86.81%), Postives = 84/91 (92.31%), Query Frame = 0


Query: 1   MAPNHLHVESNEYLFATPSNRKMKLQDREQSNPTRKNVRVGDVNLYDYHPIDPVPSSKRS 60
           M PNHLHVESN+ LFATPSNRKMKLQD   SNPTR NVRVG++NLYDY PIDPVP+SKRS
Sbjct: 32  MFPNHLHVESNKCLFATPSNRKMKLQDTVHSNPTRWNVRVGNMNLYDYSPIDPVPTSKRS 91

Query: 61  IKHGPIEHGSPLIPHMPSPSPPDQPQPGGFV 92
           IKHGPIEHGSPLIPHMP+PSPPDQPQPGGFV
Sbjct: 92  IKHGPIEHGSPLIPHMPNPSPPDQPQPGGFV 122

[Close]

BLAST of CSPI04G24680 vs. NCBI nr
Match: XP_023525817.1 (uncharacterized protein LOC111789323 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 151.0 bits (380), Expect = 5.1e-33
Identity = 73/91 (80.22%), Postives = 79/91 (86.81%), Query Frame = 0


Query: 1   MAPNHLHVESNEYLFATPSNRKMKLQDREQSNPTRKNVRVGDVNLYDYHPIDPVPSSKRS 60
           M PN  HV SNE L ATPSNRK+KLQD + S+P RKNVRV +VNLYDY PIDPVPSSKRS
Sbjct: 34  MTPNQPHVVSNECLSATPSNRKLKLQDNDDSSPGRKNVRVDNVNLYDYSPIDPVPSSKRS 93

Query: 61  IKHGPIEHGSPLIPHMPSPSPPDQPQPGGFV 92
           IKHGPIEH SPLIP+MP+PSPPDQPQPGGFV
Sbjct: 94  IKHGPIEHRSPLIPYMPNPSPPDQPQPGGFV 124

[Close]

BLAST of CSPI04G24680 vs. TAIR 10
Match: AT5G01075.1 (Glycosyl hydrolase family 35 protein )

HSP 1 Score: 54.3 bits (129), Expect = 6.0e-08
Identity = 29/54 (53.70%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 43 VNLYDYH-PIDPVPSSKRSIKHGPIEHGSPLIPHMPSP------SPPDQPQPGG 90
          V L DY+ P+DP P++K SIK GPIEHG+PL P++P P       PP Q Q GG
Sbjct: 28 VGLEDYNFPVDPTPTTKASIKPGPIEHGTPLNPYIPKPPSPSSSPPPQQSQDGG 81

The following BLAST results are available for this feature:

BLAST of CSPI04G24680 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI04G24680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0G3	5.6e-46	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G642390 PE=4 SV=1	[more]
A0A5A7V8H4	1.3e-42	94.51	Putative Glycosyl hydrolase family 35 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3BU91	1.3e-42	94.51	uncharacterized protein LOC103493594 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3BUB3	1.3e-42	94.51	uncharacterized protein LOC103493594 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1IVH6	5.5e-33	79.12	uncharacterized protein LOC111480980 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of CSPI04G24680 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011654146.1	1.2e-45	100.00	uncharacterized protein LOC105435308 [Cucumis sativus]	[more]
XP_008452634.1	2.7e-42	94.51	PREDICTED: uncharacterized protein LOC103493594 isoform X1 [Cucumis melo]	[more]
XP_008452635.1	2.7e-42	94.51	PREDICTED: uncharacterized protein LOC103493594 isoform X2 [Cucumis melo] >KAA00...	[more]
XP_038897195.1	8.9e-38	86.81	uncharacterized protein LOC120085331 [Benincasa hispida]	[more]
XP_023525817.1	5.1e-33	80.22	uncharacterized protein LOC111789323 isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CSPI04G24680 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01075.1	6.0e-08	53.70	Glycosyl hydrolase family 35 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..91
None	No IPR available	PANTHER	PTHR37249:SF3	BNAANNG14020D PROTEIN	coord: 3..90
None	No IPR available	PANTHER	PTHR37249	OS03G0206201 PROTEIN	coord: 3..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G24680.1	CSPI04G24680.1	mRNA