CSPI04G24570 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI04G24570
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr4: 22276825 .. 22277897 (-)
RNA-Seq ExpressionCSPI04G24570
SyntenyCSPI04G24570
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAGTTTTCTGAAGGGACAAATAGGGTATTTTCCAAATTCCTACTTGTACATGGATTGGTAGAAGAGGGAAAACGCAGAAGAGAAGAAAAGAGAAGAGTCAATATGGATATGCTACAACAAATGCTATACATAGCCTTAAAGTGACCCTCTGTCTTCAGAGATTGAAGGGACTGAAAGCTAGAAAGAAAAGGAAGAATGGAAGAAAGAATATTAAAAAGGATTCTGCTGAAAAGGAAAAGTTGCCGCGTCTCGTCTGCTGTGTTGCTATTTTGCAGGTTGTATACTCAATTGCATTCATTTAAGCTTCTACTTTTCTTTTATCCTTCTTTACTGCGTTGCACTGCCATACAAAGCCATGTGACTTTTCCCTCCAAGTAATCTAAGAACACCATTGTTACGAAGTAAGTACCTGGGTTTCTTCTTCTATCTCCCCATTTCCTCCCTCCATGGAAGCTCGACTGCTTCTGTTAATGGCAGTTATCACACTTCTGGTCTCTGGTGATAACAAAGCGACGATGGGGGCTGCTGCTGTTGCCTTTATCGATCAACATCCGTTATCCAATATGCAGGAGAAGCACAGGAAACATCTGCAGTTGCTGTCGTCGCCCCCACCGCGGAGTCACTTGTTCAATGCTCTCTTTGCAAGCAAGAGAAAAGTCCCCAACACTTGGGATCCAATCCACAATCGTTGAAGCTGTCTGGTTGTTTGAATCTTTAGGGAGGAATAGGAATATGGGATTATGAGGTCGGCTTCTGATCTGATTAGAGTATGAATTTCGGTTAAAATAGTGGTGTTGATTCTATTGGTAGACGTGGTCAGGTGGACTTTTGGTTTGCTTGCCTTCCTTCAGTTCGTGTATTCGGACATCTACTCGATCTCAGCCTTTTTCTGGGTGCAAACTTTATAGGGAAATGCTACCTATTTCTATCCCTTTTCTTTTTATCACAATCATTTTAGTAAAATTCAATTAAATATAAAACCCTTTCCACAGATATCTTCTCCAAAATCTGTTTGTGTGGTGTGGCCATAGTATTTTTTCTTCTCTTTTGTGTCCAACTATCTCTGTAATCC

mRNA sequence

AAAGTTTTCTGAAGGGACAAATAGGGTATTTTCCAAATTCCTACTTGTACATGGATTGGTAGAAGAGGGAAAACGCAGAAGAGAAGAAAAGAGAAGAGTCAATATGGATATGCTACAACAAATGCTATACATAGCCTTAAAGTGACCCTCTGTCTTCAGAGATTGAAGGGACTGAAAGCTAGAAAGAAAAGGAAGAATGGAAGAAAGAATATTAAAAAGGATTCTGCTGAAAAGGAAAAGTTGCCGCGTCTCGTCTGCTGTGTTGCTATTTTGCAGGTTGTATACTCAATTGCATTCATTTAAGCTTCTACTTTTCTTTTATCCTTCTTTACTGCGTTGCACTGCCATACAAAGCCATGTGACTTTTCCCTCCAAGTAATCTAAGAACACCATTGTTACGAAGTAAGTACCTGGGTTTCTTCTTCTATCTCCCCATTTCCTCCCTCCATGGAAGCTCGACTGCTTCTGTTAATGGCAGTTATCACACTTCTGGTCTCTGGTGATAACAAAGCGACGATGGGGGCTGCTGCTGTTGCCTTTATCGATCAACATCCGTTATCCAATATGCAGGAGAAGCACAGGAAACATCTGCAGTTGCTGTCGTCGCCCCCACCGCGGAGTCACTTGTTCAATGCTCTCTTTGCAAGCAAGAGAAAAGTCCCCAACACTTGGGATCCAATCCACAATCGTTGAAGCTGTCTGGTTGTTTGAATCTTTAGGGAGGAATAGGAATATGGGATTATGAGGTCGGCTTCTGATCTGATTAGAGTATGAATTTCGGTTAAAATAGTGGTGTTGATTCTATTGGTAGACGTGGTCAGGTGGACTTTTGGTTTGCTTGCCTTCCTTCAGTTCGTGTATTCGGACATCTACTCGATCTCAGCCTTTTTCTGGGTGCAAACTTTATAGGGAAATGCTACCTATTTCTATCCCTTTTCTTTTTATCACAATCATTTTAGTAAAATTCAATTAAATATAAAACCCTTTCCACAGATATCTTCTCCAAAATCTGTTTGTGTGGTGTGGCCATAGTATTTTTTCTTCTCTTTTGTGTCCAACTATCTCTGTAATCC

Coding sequence (CDS)

ATGGAAGCTCGACTGCTTCTGTTAATGGCAGTTATCACACTTCTGGTCTCTGGTGATAACAAAGCGACGATGGGGGCTGCTGCTGTTGCCTTTATCGATCAACATCCGTTATCCAATATGCAGGAGAAGCACAGGAAACATCTGCAGTTGCTGTCGTCGCCCCCACCGCGGAGTCACTTGTTCAATGCTCTCTTTGCAAGCAAGAGAAAAGTCCCCAACACTTGGGATCCAATCCACAATCGTTGA

Protein sequence

MEARLLLLMAVITLLVSGDNKATMGAAAVAFIDQHPLSNMQEKHRKHLQLLSSPPPRSHLFNALFASKRKVPNTWDPIHNR*
Homology
[Close]
BLAST of CSPI04G24570 vs. ExPASy TrEMBL
Match: A0A0A0KZW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G641770 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 5.6e-37
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1  MEARLLLLMAVITLLVSGDNKATMGAAAVAFIDQHPLSNMQEKHRKHLQLLSSPPPRSHL 60
          MEARLLLLMAVITLLVSGDNKATMGAAAVAFIDQHPLSNMQEKHRKHLQLLSSPPPRSHL
Sbjct: 1  MEARLLLLMAVITLLVSGDNKATMGAAAVAFIDQHPLSNMQEKHRKHLQLLSSPPPRSHL 60

Query: 61 FNALFASKRKVPNTWDPIHNR 82
          FNALFASKRKVPNTWDPIHNR
Sbjct: 61 FNALFASKRKVPNTWDPIHNR 81

[Close]
BLAST of CSPI04G24570 vs. ExPASy TrEMBL
Match: A0A5D3D9C5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002930 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 4.1e-24
Identity = 65/73 (89.04%), Postives = 67/73 (91.78%), Query Frame = 0 

Query: 1  MEARLLLLMAVITLLVSGDNKATMGAAAVAFIDQHPLSNMQEKHRKHLQLLSSPPPRSHL 60
          MEARLLLLMAVITLLVSG+NKATMG  AVA +DQHPLSNMQEKHRKHLQLLSSPP RSHL
Sbjct: 1  MEARLLLLMAVITLLVSGNNKATMG-VAVALVDQHPLSNMQEKHRKHLQLLSSPPLRSHL 60

Query: 61 FNALFASKRKVPN 74
          FNALFASKRK  N
Sbjct: 61 FNALFASKRKSMN 72

[Close]
BLAST of CSPI04G24570 vs. NCBI nr
Match: KAE8649873.1 (hypothetical protein Csa_012848, partial [Cucumis sativus])

HSP 1 Score: 146.7 bits (369), Expect = 8.5e-32
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 12 ITLLVSGDNKATMGAAAVAFIDQHPLSNMQEKHRKHLQLLSSPPPRSHLFNALFASKRKV 71
          ITLLVSGDNKATMGAAAVAFIDQHPLSNMQEKHRKHLQLLSSPPPRSHLFNALFASKRKV
Sbjct: 1  ITLLVSGDNKATMGAAAVAFIDQHPLSNMQEKHRKHLQLLSSPPPRSHLFNALFASKRKV 60

Query: 72 PNTWDPIHNR 82
          PNTWDPIHNR
Sbjct: 61 PNTWDPIHNR 70

[Close]
BLAST of CSPI04G24570 vs. NCBI nr
Match: KAA0064426.1 (hypothetical protein E6C27_scaffold255G001340 [Cucumis melo var. makuwa] >TYK20161.1 hypothetical protein E5676_scaffold134G002930 [Cucumis melo var. makuwa])

HSP 1 Score: 120.2 bits (300), Expect = 8.5e-24
Identity = 65/73 (89.04%), Postives = 67/73 (91.78%), Query Frame = 0 

Query: 1  MEARLLLLMAVITLLVSGDNKATMGAAAVAFIDQHPLSNMQEKHRKHLQLLSSPPPRSHL 60
          MEARLLLLMAVITLLVSG+NKATMG  AVA +DQHPLSNMQEKHRKHLQLLSSPP RSHL
Sbjct: 1  MEARLLLLMAVITLLVSGNNKATMG-VAVALVDQHPLSNMQEKHRKHLQLLSSPPLRSHL 60

Query: 61 FNALFASKRKVPN 74
          FNALFASKRK  N
Sbjct: 61 FNALFASKRKSMN 72

The following BLAST results are available for this feature:
BLAST of CSPI04G24570 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI04G24570 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZW15.6e-37100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G641770 PE=4 SV=1[more]
A0A5D3D9C54.1e-2489.04Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of CSPI04G24570 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8649873.18.5e-32100.00hypothetical protein Csa_012848, partial [Cucumis sativus][more]
KAA0064426.18.5e-2489.04hypothetical protein E6C27_scaffold255G001340 [Cucumis melo var. makuwa] >TYK201... [more]
BLAST of CSPI04G24570 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G24570.1CSPI04G24570.1mRNA