CSPI04G24000 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI04G24000
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr4: 21918404 .. 21919445 (-)
RNA-Seq ExpressionCSPI04G24000
SyntenyCSPI04G24000
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CACTTTAATTATGAACCCCCATTACCTCGATCTCAGCTCCAAAAATGGTCCTCAATCGCTTGCCAATGCCGTCGCACGGGCGGCTGAAAGCCCTCTTCCACCACCCACTCGTGCGCTCTTGATGTAAATTCAAAAACCCTTTTATGTTTTTGGATCTCTCTTTATATCTATCTCTCTTTTTATGCACTTTTATCCGTTTCTGCAATTCCATTTTCTCTATGATTGTTGAAAAGACTGAGATCCCTTTTTGTGTGGGACTACTGATTACTGGGTAGTGATATGATCATGTGGGGTACTTTATATACTACGAATATGGCCAACCAAGGCACCTATATCTCATCATCATCGTCATGATTGTCTATGATGGAATACCTTGAATTCGTTATTTGTTTCTCCAAATATCCAAGCATTTAGGGTCTTACTCTATGTTATAAGTTGTATTCATATTTATGTTATTTACATTGTTTATGATTTTGATTCTAGAGTTTAGAGAAGTACTAAATCTCTATGCAGATTCTCTATGTTTTTGTTTTTCCTTGATTGTTGATTGTTGATTCCGTAGGACTCTGGATTCTTTTGATGGTTCAAAGATGATTAGAGTTTTGAGTGGGCTTTTGAATTATTGTTATCCCTTTGTATTATGGTACTTTTGGTTTTGGGGGGTAGTCTTTTTTTAAATCTGTGGCTATGGTTTTGTTGGACTCACTTGCATAACCCATTCCAACGCGTCCCTACTCTGAAATCTGATTCAAGCTCTTTTTCCACAAACCCGAAATTTGTTTGAGATATCAGTCTCTTTTCTCGTGGGGTTGGCCCGGCTCTGAATTAAAGTTCTTATGAGCTTTTTCATTTTCCCTTGTGAAGTTCTTATGAAGCTTCACTTTCAGTTTTACTCAGCAATCTTGTGGTTGGAATTCATAATGTTAAGAGTAAGATGATGATGATGATGAGAGATAGAGAGATAGAGAGAGAGGTGGGGAAAGAGTTCTGTGGTATGTCAATTCTAGGACAAGTTCGGTTATGGAAATATGCCAATTTCTAG

mRNA sequence

CACTTTAATTATGAACCCCCATTACCTCGATCTCAGCTCCAAAAATGGTCCTCAATCGCTTGCCAATGCCGTCGCACGGGCGGCTGAAAGCCCTCTTCCACCACCCACTCGTGCGCTCTTGATTTCTTATGAAGCTTCACTTTCAGTTTTACTCAGCAATCTTGTGGTTGGAATTCATAATGTTAAGAGTAAGATGATGATGATGATGAGAGATAGAGAGATAGAGAGAGAGGTGGGGAAAGAGTTCTGTGGTATGTCAATTCTAGGACAAGTTCGGTTATGGAAATATGCCAATTTCTAG

Coding sequence (CDS)

ATGAACCCCCATTACCTCGATCTCAGCTCCAAAAATGGTCCTCAATCGCTTGCCAATGCCGTCGCACGGGCGGCTGAAAGCCCTCTTCCACCACCCACTCGTGCGCTCTTGATTTCTTATGAAGCTTCACTTTCAGTTTTACTCAGCAATCTTGTGGTTGGAATTCATAATGTTAAGAGTAAGATGATGATGATGATGAGAGATAGAGAGATAGAGAGAGAGGTGGGGAAAGAGTTCTGTGGTATGTCAATTCTAGGACAAGTTCGGTTATGGAAATATGCCAATTTCTAG

Protein sequence

MNPHYLDLSSKNGPQSLANAVARAAESPLPPPTRALLISYEASLSVLLSNLVVGIHNVKSKMMMMMRDREIEREVGKEFCGMSILGQVRLWKYANF*
Homology
[Close]
BLAST of CSPI04G24000 vs. ExPASy TrEMBL
Match: A0A0A0L2C1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639230 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 6.1e-43
Identity = 95/96 (98.96%), Postives = 95/96 (98.96%), Query Frame = 0 

Query: 1  MNPHYLDLSSKNGPQSLANAVARAAESPLPPPTRALLISYEASLSVLLSNLVVGIHNVKS 60
          MNPHYLDLSSKNGPQSLANAVARAAESPLPPPTRALLISYEASLSVLLSNLVVGIHNVKS
Sbjct: 1  MNPHYLDLSSKNGPQSLANAVARAAESPLPPPTRALLISYEASLSVLLSNLVVGIHNVKS 60

Query: 61 KMMMMMRDREIEREVGKEFCGMSILGQVRLWKYANF 97
          K MMMMRDREIEREVGKEFCGMSILGQVRLWKYANF
Sbjct: 61 K-MMMMRDREIEREVGKEFCGMSILGQVRLWKYANF 95

[Close]
BLAST of CSPI04G24000 vs. NCBI nr
Match: KGN55184.1 (hypothetical protein Csa_012872 [Cucumis sativus])

HSP 1 Score: 183.0 bits (463), Expect = 1.3e-42
Identity = 95/96 (98.96%), Postives = 95/96 (98.96%), Query Frame = 0 

Query: 1  MNPHYLDLSSKNGPQSLANAVARAAESPLPPPTRALLISYEASLSVLLSNLVVGIHNVKS 60
          MNPHYLDLSSKNGPQSLANAVARAAESPLPPPTRALLISYEASLSVLLSNLVVGIHNVKS
Sbjct: 1  MNPHYLDLSSKNGPQSLANAVARAAESPLPPPTRALLISYEASLSVLLSNLVVGIHNVKS 60

Query: 61 KMMMMMRDREIEREVGKEFCGMSILGQVRLWKYANF 97
          K MMMMRDREIEREVGKEFCGMSILGQVRLWKYANF
Sbjct: 61 K-MMMMRDREIEREVGKEFCGMSILGQVRLWKYANF 95

The following BLAST results are available for this feature:
BLAST of CSPI04G24000 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI04G24000 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L2C16.1e-4398.96Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639230 PE=4 SV=1[more]
BLAST of CSPI04G24000 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN55184.11.3e-4298.96hypothetical protein Csa_012872 [Cucumis sativus][more]
BLAST of CSPI04G24000 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G24000.1CSPI04G24000.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane