CSPI04G23580 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI04G23580
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr4: 21624485 .. 21625167 (+)
RNA-Seq ExpressionCSPI04G23580
SyntenyCSPI04G23580
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAGTAGTCAACTTTCTCCTCAAAAGATAGACCAAAGTTTCAAGAAAATGGCTGTTACAAGAACTAGTTTACTGGTTGGTCTCCTGGCGTTTCTTTGCTTAAGCCTCGGCTCTGCCAATCGAATTCTCAAGAACAACGATGCTGAAAACCAACTAATAGGTGACGATGTGCCTTCAGGAAAAGAAAACCACCCACAAAATTCCAACCATGATGAGTTGAAAAGTCTACCAACAGACAGCATGGCAAAAATCAGTTCCATTAATCCAATAAATGGCGATTGTTGCAGCTATGGCACCAATTGTGGAATATATCCACCACCGACCTGTGGATGCGGTGGATGCGGTGGATGCGGTGGATGCAGTGGTGGCGGAGGCGGTGGATGCAGTGGATGCAGTGGTGGCGGCGGTGGCGGTGGAAGCTCTAGTTGCCAATCTTGCAATACTTGTTCTTCATGCCAATGGCAGGGATGTCATGGTTGCCAGGAATGTCAAGGGTGCCAGGGATGCCAGAGTTGTGGGTGCCAAGCCAGCATGGACGATTCTAAGGTCGAACAGGATTCAGTTCAAACGGGTGAACCTGCACCCGTGGTGACAATTGTGCCACCAGCCAAGCCAACAGATAATGACATAAAATCCAGTGGGGGATCAAATCAGGACATAAAATCCAATGGCGGTCTGGTTTAG

mRNA sequence

AAAGTAGTCAACTTTCTCCTCAAAAGATAGACCAAAGTTTCAAGAAAATGGCTGTTACAAGAACTAGTTTACTGGTTGGTCTCCTGGCGTTTCTTTGCTTAAGCCTCGGCTCTGCCAATCGAATTCTCAAGAACAACGATGCTGAAAACCAACTAATAGGTGACGATGTGCCTTCAGGAAAAGAAAACCACCCACAAAATTCCAACCATGATGAGTTGAAAAGTCTACCAACAGACAGCATGGCAAAAATCAGTTCCATTAATCCAATAAATGGCGATTGTTGCAGCTATGGCACCAATTGTGGAATATATCCACCACCGACCTGTGGATGCGGTGGATGCGGTGGATGCGGTGGATGCAGTGGTGGCGGAGGCGGTGGATGCAGTGGATGCAGTGGTGGCGGCGGTGGCGGTGGAAGCTCTAGTTGCCAATCTTGCAATACTTGTTCTTCATGCCAATGGCAGGGATGTCATGGTTGCCAGGAATGTCAAGGGTGCCAGGGATGCCAGAGTTGTGGGTGCCAAGCCAGCATGGACGATTCTAAGGTCGAACAGGATTCAGTTCAAACGGGTGAACCTGCACCCGTGGTGACAATTGTGCCACCAGCCAAGCCAACAGATAATGACATAAAATCCAGTGGGGGATCAAATCAGGACATAAAATCCAATGGCGGTCTGGTTTAG

Coding sequence (CDS)

ATGGCTGTTACAAGAACTAGTTTACTGGTTGGTCTCCTGGCGTTTCTTTGCTTAAGCCTCGGCTCTGCCAATCGAATTCTCAAGAACAACGATGCTGAAAACCAACTAATAGGTGACGATGTGCCTTCAGGAAAAGAAAACCACCCACAAAATTCCAACCATGATGAGTTGAAAAGTCTACCAACAGACAGCATGGCAAAAATCAGTTCCATTAATCCAATAAATGGCGATTGTTGCAGCTATGGCACCAATTGTGGAATATATCCACCACCGACCTGTGGATGCGGTGGATGCGGTGGATGCGGTGGATGCAGTGGTGGCGGAGGCGGTGGATGCAGTGGATGCAGTGGTGGCGGCGGTGGCGGTGGAAGCTCTAGTTGCCAATCTTGCAATACTTGTTCTTCATGCCAATGGCAGGGATGTCATGGTTGCCAGGAATGTCAAGGGTGCCAGGGATGCCAGAGTTGTGGGTGCCAAGCCAGCATGGACGATTCTAAGGTCGAACAGGATTCAGTTCAAACGGGTGAACCTGCACCCGTGGTGACAATTGTGCCACCAGCCAAGCCAACAGATAATGACATAAAATCCAGTGGGGGATCAAATCAGGACATAAAATCCAATGGCGGTCTGGTTTAG

Protein sequence

MAVTRTSLLVGLLAFLCLSLGSANRILKNNDAENQLIGDDVPSGKENHPQNSNHDELKSLPTDSMAKISSINPINGDCCSYGTNCGIYPPPTCGCGGCGGCGGCSGGGGGGCSGCSGGGGGGGSSSCQSCNTCSSCQWQGCHGCQECQGCQGCQSCGCQASMDDSKVEQDSVQTGEPAPVVTIVPPAKPTDNDIKSSGGSNQDIKSNGGLV*
Homology
BLAST of CSPI04G23580 vs. ExPASy TrEMBL
Match: A0A0A0L3F6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G637770 PE=4 SV=1)

HSP 1 Score: 406.8 bits (1044), Expect = 5.7e-110
Identity = 209/211 (99.05%), Postives = 210/211 (99.53%), Query Frame = 0

Query: 1   MAVTRTSLLVGLLAFLCLSLGSANRILKNNDAENQLIGDDVPSGKENHPQNSNHDELKSL 60
           MAVTRTSLLVGLLAFLCLSLGSANRILKNNDAENQLIGDDVPSGKENHPQNSNHDELKS+
Sbjct: 1   MAVTRTSLLVGLLAFLCLSLGSANRILKNNDAENQLIGDDVPSGKENHPQNSNHDELKSI 60

Query: 61  PTDSMAKISSINPINGDCCSYGTNCGIYPPPTCGCGGCGGCGGCSGGGGGGCSGCSGGGG 120
           PTDSMAKISSINPINGDCCSYGTNCGIYPPPTCGCGGCGGC GCSGGGGGGCSGCSGGGG
Sbjct: 61  PTDSMAKISSINPINGDCCSYGTNCGIYPPPTCGCGGCGGCSGCSGGGGGGCSGCSGGGG 120

Query: 121 GGGSSSCQSCNTCSSCQWQGCHGCQECQGCQGCQSCGCQASMDDSKVEQDSVQTGEPAPV 180
           GGGSSSCQSCNTCSSCQWQGCHGCQECQGCQGCQSCGCQASMDDSKVEQDSVQTGEPAPV
Sbjct: 121 GGGSSSCQSCNTCSSCQWQGCHGCQECQGCQGCQSCGCQASMDDSKVEQDSVQTGEPAPV 180

Query: 181 VTIVPPAKPTDNDIKSSGGSNQDIKSNGGLV 212
           VTIVPPAKPTDNDIKSSGGSNQDIKSNGGLV
Sbjct: 181 VTIVPPAKPTDNDIKSSGGSNQDIKSNGGLV 211

BLAST of CSPI04G23580 vs. ExPASy TrEMBL
Match: A0A1Y7VJ07 (Predicted gene, 47959 OS=Mus musculus OX=10090 GN=Gm47959 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.2e-04
Identity = 40/65 (61.54%), Postives = 40/65 (61.54%), Query Frame = 0

Query: 93  CGCGGCGGCGGCSG-GGGGGCSGCSGGGGGGGSSSCQSCNTCSSCQWQGCHGCQECQGCQ 152
           CGCGGCGGCGGC G GG GGC GC G GG GG   C  C  C  C   GC GC  C GC 
Sbjct: 3   CGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC--SGCGGCGGCGGCG 62

Query: 153 GCQSC 157
           GC SC
Sbjct: 63  GCSSC 65

BLAST of CSPI04G23580 vs. NCBI nr
Match: KGN55137.1 (hypothetical protein Csa_012773 [Cucumis sativus])

HSP 1 Score: 406.8 bits (1044), Expect = 1.2e-109
Identity = 209/211 (99.05%), Postives = 210/211 (99.53%), Query Frame = 0

Query: 1   MAVTRTSLLVGLLAFLCLSLGSANRILKNNDAENQLIGDDVPSGKENHPQNSNHDELKSL 60
           MAVTRTSLLVGLLAFLCLSLGSANRILKNNDAENQLIGDDVPSGKENHPQNSNHDELKS+
Sbjct: 1   MAVTRTSLLVGLLAFLCLSLGSANRILKNNDAENQLIGDDVPSGKENHPQNSNHDELKSI 60

Query: 61  PTDSMAKISSINPINGDCCSYGTNCGIYPPPTCGCGGCGGCGGCSGGGGGGCSGCSGGGG 120
           PTDSMAKISSINPINGDCCSYGTNCGIYPPPTCGCGGCGGC GCSGGGGGGCSGCSGGGG
Sbjct: 61  PTDSMAKISSINPINGDCCSYGTNCGIYPPPTCGCGGCGGCSGCSGGGGGGCSGCSGGGG 120

Query: 121 GGGSSSCQSCNTCSSCQWQGCHGCQECQGCQGCQSCGCQASMDDSKVEQDSVQTGEPAPV 180
           GGGSSSCQSCNTCSSCQWQGCHGCQECQGCQGCQSCGCQASMDDSKVEQDSVQTGEPAPV
Sbjct: 121 GGGSSSCQSCNTCSSCQWQGCHGCQECQGCQGCQSCGCQASMDDSKVEQDSVQTGEPAPV 180

Query: 181 VTIVPPAKPTDNDIKSSGGSNQDIKSNGGLV 212
           VTIVPPAKPTDNDIKSSGGSNQDIKSNGGLV
Sbjct: 181 VTIVPPAKPTDNDIKSSGGSNQDIKSNGGLV 211

BLAST of CSPI04G23580 vs. NCBI nr
Match: KAG6591970.1 (hypothetical protein SDJN03_14316, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 143.7 bits (361), Expect = 1.9e-30
Identity = 112/227 (49.34%), Postives = 138/227 (60.79%), Query Frame = 0

Query: 1   MAVTRTSLLVGLLAFLCLSLGSANRILKNNDAENQLIGDDVPSGKENHPQNSNHDELKSL 60
           MAVT+ S LVGLLAFLCLSL SANR+LKNNDAE +L+ ++V S ++N  Q+ N+ ELKS+
Sbjct: 1   MAVTKNSFLVGLLAFLCLSLSSANRVLKNNDAEKELLNNNVSSEQDNQLQDFNNAELKSI 60

Query: 61  PTDSMAKISSINPINGDCCSYGTNCGIYPPPTCGCGGCGGCGGCSGGGGGGCSGCSGGGG 120
           P  ++ K+SS+    GDC   G N        CG  G GG       G GG S     G 
Sbjct: 61  PEGNVPKLSSVGSGYGDC---GGN--------CGSSGGGGYTYPPNYGSGGGSSPPNYGS 120

Query: 121 GGGSSSCQSCNTCSSCQWQGCHGCQECQGCQ-GCQSC-----GCQA----------SMDD 180
           GGGSS CQ C T S C WQGC G Q CQGCQ GCQ C     GCQA          +++D
Sbjct: 121 GGGSSGCQPCYTYSPCPWQGCPGFQGCQGCQGGCQGCQGGCQGCQAPHPPCTFEVGTVND 180

Query: 181 SKVEQDSVQTGEPAPVVTIVPPAKPTDNDIKSSGGSNQDIKSNGGLV 212
           SK++ +S+  GE        PP  P ++ IKSSGG+NQD+KSNGGLV
Sbjct: 181 SKIQDESIPMGEEPE-----PPVLPENHHIKSSGGANQDMKSNGGLV 211

BLAST of CSPI04G23580 vs. NCBI nr
Match: XP_023535133.1 (mesenchyme-specific cell surface glycoprotein-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 141.4 bits (355), Expect = 9.3e-30
Identity = 112/234 (47.86%), Postives = 139/234 (59.40%), Query Frame = 0

Query: 1   MAVTRTSLLVGLLAFLCLSLGSANRILKNNDAENQLIGDDVPSGKENHPQNSNHDELKSL 60
           MAVT++S LVGLLAFLCLSL SANR+LKNNDAE +L+ ++V S ++N  Q+ N+ ELKS+
Sbjct: 1   MAVTKSSFLVGLLAFLCLSLSSANRVLKNNDAEKELLSNNVSSEQDNQLQDFNNAELKSI 60

Query: 61  PTDSMAKISSINPINGDCCSYGTNCGIYPPPTCGCGGCGGCGGCSGGGGGGCSGCSGGGG 120
           P  ++ K+SS+    GDC   G N        CG  G GG       G GG S     G 
Sbjct: 61  PEGNVPKLSSVGSGYGDC---GGN--------CGSSGGGGYTYPPNYGSGGGSSPPNYGS 120

Query: 121 GGGSSSCQSCNTCSSCQWQGCHGCQECQGCQ--------GCQSC-----GCQA------- 180
           GGGSS CQ C T S C WQGC G Q CQGCQ        GCQ C     GCQA       
Sbjct: 121 GGGSSGCQPCYTYSPCPWQGCPGFQGCQGCQGGCQGCQGGCQGCQGGCQGCQAPHPPCTF 180

Query: 181 ---SMDDSKVEQDSVQTGEPAPVVTIVPPAKPTDNDIKSSGGSNQDIKSNGGLV 212
              +++DSK++ +S+  GE        PP  P ++ IKSSGG+NQD+KSNGGLV
Sbjct: 181 EVGTVNDSKIQDESIPMGEEPE-----PPVLPENHHIKSSGGANQDMKSNGGLV 218

BLAST of CSPI04G23580 vs. NCBI nr
Match: KAG6607873.1 (hypothetical protein SDJN03_01215, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 91.7 bits (226), Expect = 8.4e-15
Identity = 80/213 (37.56%), Postives = 107/213 (50.23%), Query Frame = 0

Query: 1   MAVTRTSLLVGLLAFLCLSLGSANRILKNNDAENQLIGDDVPSGKENHPQNSNHDELKSL 60
           MAVT+ S+LV LL  LCLS  SANR+LK+ND+EN+ I + V  G+E    N  H EL ++
Sbjct: 7   MAVTKDSILVSLLMLLCLSHSSANRVLKDNDSENESINNSVSFGQEYELHNFIHAELNNI 66

Query: 61  -PTDSMAKISSINPINGDCCSYGTNCGIYP-PPTCGCGGCGGCGGCSGGGGGGCSGCSGG 120
            P  S+ K  S      DCC++G + G Y  PP   C                       
Sbjct: 67  VPEGSIPKFRSYR----DCCNHGNHGGGYVCPPNHAC----------------------- 126

Query: 121 GGGGGSSSCQSCNTCSSCQWQGCHGCQECQGCQGCQSCGCQASMDDSKVEQDSVQTGEPA 180
              G +S C+   +CS CQW                 CGC      S V Q+S+QT E A
Sbjct: 127 ---GRNSGCRPYYSCSPCQWWRYPVLP--------PPCGCAVGKSYSMV-QESIQTSE-A 179

Query: 181 PVVTIVPPAKPTDNDIKSSGGSNQDIKSNGGLV 212
            +   VP  +P +++IK SGG+NQ++KSNGGLV
Sbjct: 187 DLDGNVPAVEPANHNIKFSGGANQNMKSNGGLV 179

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L3F65.7e-11099.05Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G637770 PE=4 SV=1[more]
A0A1Y7VJ074.2e-0461.54Predicted gene, 47959 OS=Mus musculus OX=10090 GN=Gm47959 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KGN55137.11.2e-10999.05hypothetical protein Csa_012773 [Cucumis sativus][more]
KAG6591970.11.9e-3049.34hypothetical protein SDJN03_14316, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023535133.19.3e-3047.86mesenchyme-specific cell surface glycoprotein-like [Cucurbita pepo subsp. pepo][more]
KAG6607873.18.4e-1537.56hypothetical protein SDJN03_01215, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..60
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 193..211
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 169..211

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G23580.1CSPI04G23580.1mRNA