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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: five_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. AAAGTAGTCAACTTTCTCCTCAAAAGATAGACCAAAGTTTCAAGAAAATGGCTGTTACAAGAACTAGTTTACTGGTTGGTCTCCTGGCGTTTCTTTGCTTAAGCCTCGGCTCTGCCAATCGAATTCTCAAGAACAACGATGCTGAAAACCAACTAATAGGTGACGATGTGCCTTCAGGAAAAGAAAACCACCCACAAAATTCCAACCATGATGAGTTGAAAAGTCTACCAACAGACAGCATGGCAAAAATCAGTTCCATTAATCCAATAAATGGCGATTGTTGCAGCTATGGCACCAATTGTGGAATATATCCACCACCGACCTGTGGATGCGGTGGATGCGGTGGATGCGGTGGATGCAGTGGTGGCGGAGGCGGTGGATGCAGTGGATGCAGTGGTGGCGGCGGTGGCGGTGGAAGCTCTAGTTGCCAATCTTGCAATACTTGTTCTTCATGCCAATGGCAGGGATGTCATGGTTGCCAGGAATGTCAAGGGTGCCAGGGATGCCAGAGTTGTGGGTGCCAAGCCAGCATGGACGATTCTAAGGTCGAACAGGATTCAGTTCAAACGGGTGAACCTGCACCCGTGGTGACAATTGTGCCACCAGCCAAGCCAACAGATAATGACATAAAATCCAGTGGGGGATCAAATCAGGACATAAAATCCAATGGCGGTCTGGTTTAG mRNA sequence AAAGTAGTCAACTTTCTCCTCAAAAGATAGACCAAAGTTTCAAGAAAATGGCTGTTACAAGAACTAGTTTACTGGTTGGTCTCCTGGCGTTTCTTTGCTTAAGCCTCGGCTCTGCCAATCGAATTCTCAAGAACAACGATGCTGAAAACCAACTAATAGGTGACGATGTGCCTTCAGGAAAAGAAAACCACCCACAAAATTCCAACCATGATGAGTTGAAAAGTCTACCAACAGACAGCATGGCAAAAATCAGTTCCATTAATCCAATAAATGGCGATTGTTGCAGCTATGGCACCAATTGTGGAATATATCCACCACCGACCTGTGGATGCGGTGGATGCGGTGGATGCGGTGGATGCAGTGGTGGCGGAGGCGGTGGATGCAGTGGATGCAGTGGTGGCGGCGGTGGCGGTGGAAGCTCTAGTTGCCAATCTTGCAATACTTGTTCTTCATGCCAATGGCAGGGATGTCATGGTTGCCAGGAATGTCAAGGGTGCCAGGGATGCCAGAGTTGTGGGTGCCAAGCCAGCATGGACGATTCTAAGGTCGAACAGGATTCAGTTCAAACGGGTGAACCTGCACCCGTGGTGACAATTGTGCCACCAGCCAAGCCAACAGATAATGACATAAAATCCAGTGGGGGATCAAATCAGGACATAAAATCCAATGGCGGTCTGGTTTAG Coding sequence (CDS) ATGGCTGTTACAAGAACTAGTTTACTGGTTGGTCTCCTGGCGTTTCTTTGCTTAAGCCTCGGCTCTGCCAATCGAATTCTCAAGAACAACGATGCTGAAAACCAACTAATAGGTGACGATGTGCCTTCAGGAAAAGAAAACCACCCACAAAATTCCAACCATGATGAGTTGAAAAGTCTACCAACAGACAGCATGGCAAAAATCAGTTCCATTAATCCAATAAATGGCGATTGTTGCAGCTATGGCACCAATTGTGGAATATATCCACCACCGACCTGTGGATGCGGTGGATGCGGTGGATGCGGTGGATGCAGTGGTGGCGGAGGCGGTGGATGCAGTGGATGCAGTGGTGGCGGCGGTGGCGGTGGAAGCTCTAGTTGCCAATCTTGCAATACTTGTTCTTCATGCCAATGGCAGGGATGTCATGGTTGCCAGGAATGTCAAGGGTGCCAGGGATGCCAGAGTTGTGGGTGCCAAGCCAGCATGGACGATTCTAAGGTCGAACAGGATTCAGTTCAAACGGGTGAACCTGCACCCGTGGTGACAATTGTGCCACCAGCCAAGCCAACAGATAATGACATAAAATCCAGTGGGGGATCAAATCAGGACATAAAATCCAATGGCGGTCTGGTTTAG Protein sequence MAVTRTSLLVGLLAFLCLSLGSANRILKNNDAENQLIGDDVPSGKENHPQNSNHDELKSLPTDSMAKISSINPINGDCCSYGTNCGIYPPPTCGCGGCGGCGGCSGGGGGGCSGCSGGGGGGGSSSCQSCNTCSSCQWQGCHGCQECQGCQGCQSCGCQASMDDSKVEQDSVQTGEPAPVVTIVPPAKPTDNDIKSSGGSNQDIKSNGGLV*
Homology
BLAST of CSPI04G23580 vs. ExPASy TrEMBL
Match: A0A0A0L3F6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G637770 PE=4 SV=1) HSP 1 Score: 406.8 bits (1044), Expect = 5.7e-110 Identity = 209/211 (99.05%), Postives = 210/211 (99.53%), Query Frame = 0 Query: 1 MAVTRTSLLVGLLAFLCLSLGSANRILKNNDAENQLIGDDVPSGKENHPQNSNHDELKSL 60 MAVTRTSLLVGLLAFLCLSLGSANRILKNNDAENQLIGDDVPSGKENHPQNSNHDELKS+ Sbjct: 1 MAVTRTSLLVGLLAFLCLSLGSANRILKNNDAENQLIGDDVPSGKENHPQNSNHDELKSI 60
Query: 61 PTDSMAKISSINPINGDCCSYGTNCGIYPPPTCGCGGCGGCGGCSGGGGGGCSGCSGGGG 120 PTDSMAKISSINPINGDCCSYGTNCGIYPPPTCGCGGCGGC GCSGGGGGGCSGCSGGGG Sbjct: 61 PTDSMAKISSINPINGDCCSYGTNCGIYPPPTCGCGGCGGCSGCSGGGGGGCSGCSGGGG 120
Query: 121 GGGSSSCQSCNTCSSCQWQGCHGCQECQGCQGCQSCGCQASMDDSKVEQDSVQTGEPAPV 180 GGGSSSCQSCNTCSSCQWQGCHGCQECQGCQGCQSCGCQASMDDSKVEQDSVQTGEPAPV Sbjct: 121 GGGSSSCQSCNTCSSCQWQGCHGCQECQGCQGCQSCGCQASMDDSKVEQDSVQTGEPAPV 180
Query: 181 VTIVPPAKPTDNDIKSSGGSNQDIKSNGGLV 212 VTIVPPAKPTDNDIKSSGGSNQDIKSNGGLV Sbjct: 181 VTIVPPAKPTDNDIKSSGGSNQDIKSNGGLV 211
BLAST of CSPI04G23580 vs. ExPASy TrEMBL
Match: A0A1Y7VJ07 (Predicted gene, 47959 OS=Mus musculus OX=10090 GN=Gm47959 PE=4 SV=1) HSP 1 Score: 55.1 bits (131), Expect = 4.2e-04 Identity = 40/65 (61.54%), Postives = 40/65 (61.54%), Query Frame = 0 Query: 93 CGCGGCGGCGGCSG-GGGGGCSGCSGGGGGGGSSSCQSCNTCSSCQWQGCHGCQECQGCQ 152 CGCGGCGGCGGC G GG GGC GC G GG GG C C C C GC GC C GC Sbjct: 3 CGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC--SGCGGCGGCGGCG 62
Query: 153 GCQSC 157 GC SC Sbjct: 63 GCSSC 65
BLAST of CSPI04G23580 vs. NCBI nr
Match: KGN55137.1 (hypothetical protein Csa_012773 [Cucumis sativus]) HSP 1 Score: 406.8 bits (1044), Expect = 1.2e-109 Identity = 209/211 (99.05%), Postives = 210/211 (99.53%), Query Frame = 0 Query: 1 MAVTRTSLLVGLLAFLCLSLGSANRILKNNDAENQLIGDDVPSGKENHPQNSNHDELKSL 60 MAVTRTSLLVGLLAFLCLSLGSANRILKNNDAENQLIGDDVPSGKENHPQNSNHDELKS+ Sbjct: 1 MAVTRTSLLVGLLAFLCLSLGSANRILKNNDAENQLIGDDVPSGKENHPQNSNHDELKSI 60
Query: 61 PTDSMAKISSINPINGDCCSYGTNCGIYPPPTCGCGGCGGCGGCSGGGGGGCSGCSGGGG 120 PTDSMAKISSINPINGDCCSYGTNCGIYPPPTCGCGGCGGC GCSGGGGGGCSGCSGGGG Sbjct: 61 PTDSMAKISSINPINGDCCSYGTNCGIYPPPTCGCGGCGGCSGCSGGGGGGCSGCSGGGG 120
Query: 121 GGGSSSCQSCNTCSSCQWQGCHGCQECQGCQGCQSCGCQASMDDSKVEQDSVQTGEPAPV 180 GGGSSSCQSCNTCSSCQWQGCHGCQECQGCQGCQSCGCQASMDDSKVEQDSVQTGEPAPV Sbjct: 121 GGGSSSCQSCNTCSSCQWQGCHGCQECQGCQGCQSCGCQASMDDSKVEQDSVQTGEPAPV 180
Query: 181 VTIVPPAKPTDNDIKSSGGSNQDIKSNGGLV 212 VTIVPPAKPTDNDIKSSGGSNQDIKSNGGLV Sbjct: 181 VTIVPPAKPTDNDIKSSGGSNQDIKSNGGLV 211
BLAST of CSPI04G23580 vs. NCBI nr
Match: KAG6591970.1 (hypothetical protein SDJN03_14316, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 143.7 bits (361), Expect = 1.9e-30 Identity = 112/227 (49.34%), Postives = 138/227 (60.79%), Query Frame = 0 Query: 1 MAVTRTSLLVGLLAFLCLSLGSANRILKNNDAENQLIGDDVPSGKENHPQNSNHDELKSL 60 MAVT+ S LVGLLAFLCLSL SANR+LKNNDAE +L+ ++V S ++N Q+ N+ ELKS+ Sbjct: 1 MAVTKNSFLVGLLAFLCLSLSSANRVLKNNDAEKELLNNNVSSEQDNQLQDFNNAELKSI 60
Query: 61 PTDSMAKISSINPINGDCCSYGTNCGIYPPPTCGCGGCGGCGGCSGGGGGGCSGCSGGGG 120 P ++ K+SS+ GDC G N CG G GG G GG S G Sbjct: 61 PEGNVPKLSSVGSGYGDC---GGN--------CGSSGGGGYTYPPNYGSGGGSSPPNYGS 120
Query: 121 GGGSSSCQSCNTCSSCQWQGCHGCQECQGCQ-GCQSC-----GCQA----------SMDD 180 GGGSS CQ C T S C WQGC G Q CQGCQ GCQ C GCQA +++D Sbjct: 121 GGGSSGCQPCYTYSPCPWQGCPGFQGCQGCQGGCQGCQGGCQGCQAPHPPCTFEVGTVND 180
Query: 181 SKVEQDSVQTGEPAPVVTIVPPAKPTDNDIKSSGGSNQDIKSNGGLV 212 SK++ +S+ GE PP P ++ IKSSGG+NQD+KSNGGLV Sbjct: 181 SKIQDESIPMGEEPE-----PPVLPENHHIKSSGGANQDMKSNGGLV 211
BLAST of CSPI04G23580 vs. NCBI nr
Match: XP_023535133.1 (mesenchyme-specific cell surface glycoprotein-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 141.4 bits (355), Expect = 9.3e-30 Identity = 112/234 (47.86%), Postives = 139/234 (59.40%), Query Frame = 0 Query: 1 MAVTRTSLLVGLLAFLCLSLGSANRILKNNDAENQLIGDDVPSGKENHPQNSNHDELKSL 60 MAVT++S LVGLLAFLCLSL SANR+LKNNDAE +L+ ++V S ++N Q+ N+ ELKS+ Sbjct: 1 MAVTKSSFLVGLLAFLCLSLSSANRVLKNNDAEKELLSNNVSSEQDNQLQDFNNAELKSI 60
Query: 61 PTDSMAKISSINPINGDCCSYGTNCGIYPPPTCGCGGCGGCGGCSGGGGGGCSGCSGGGG 120 P ++ K+SS+ GDC G N CG G GG G GG S G Sbjct: 61 PEGNVPKLSSVGSGYGDC---GGN--------CGSSGGGGYTYPPNYGSGGGSSPPNYGS 120
Query: 121 GGGSSSCQSCNTCSSCQWQGCHGCQECQGCQ--------GCQSC-----GCQA------- 180 GGGSS CQ C T S C WQGC G Q CQGCQ GCQ C GCQA Sbjct: 121 GGGSSGCQPCYTYSPCPWQGCPGFQGCQGCQGGCQGCQGGCQGCQGGCQGCQAPHPPCTF 180
Query: 181 ---SMDDSKVEQDSVQTGEPAPVVTIVPPAKPTDNDIKSSGGSNQDIKSNGGLV 212 +++DSK++ +S+ GE PP P ++ IKSSGG+NQD+KSNGGLV Sbjct: 181 EVGTVNDSKIQDESIPMGEEPE-----PPVLPENHHIKSSGGANQDMKSNGGLV 218
BLAST of CSPI04G23580 vs. NCBI nr
Match: KAG6607873.1 (hypothetical protein SDJN03_01215, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 91.7 bits (226), Expect = 8.4e-15 Identity = 80/213 (37.56%), Postives = 107/213 (50.23%), Query Frame = 0 Query: 1 MAVTRTSLLVGLLAFLCLSLGSANRILKNNDAENQLIGDDVPSGKENHPQNSNHDELKSL 60 MAVT+ S+LV LL LCLS SANR+LK+ND+EN+ I + V G+E N H EL ++ Sbjct: 7 MAVTKDSILVSLLMLLCLSHSSANRVLKDNDSENESINNSVSFGQEYELHNFIHAELNNI 66
Query: 61 -PTDSMAKISSINPINGDCCSYGTNCGIYP-PPTCGCGGCGGCGGCSGGGGGGCSGCSGG 120 P S+ K S DCC++G + G Y PP C Sbjct: 67 VPEGSIPKFRSYR----DCCNHGNHGGGYVCPPNHAC----------------------- 126
Query: 121 GGGGGSSSCQSCNTCSSCQWQGCHGCQECQGCQGCQSCGCQASMDDSKVEQDSVQTGEPA 180 G +S C+ +CS CQW CGC S V Q+S+QT E A Sbjct: 127 ---GRNSGCRPYYSCSPCQWWRYPVLP--------PPCGCAVGKSYSMV-QESIQTSE-A 179
Query: 181 PVVTIVPPAKPTDNDIKSSGGSNQDIKSNGGLV 212 + VP +P +++IK SGG+NQ++KSNGGLV Sbjct: 187 DLDGNVPAVEPANHNIKFSGGANQNMKSNGGLV 179
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0L3F6 | 5.7e-110 | 99.05 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G637770 PE=4 SV=1 | [more] |
A0A1Y7VJ07 | 4.2e-04 | 61.54 | Predicted gene, 47959 OS=Mus musculus OX=10090 GN=Gm47959 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
KGN55137.1 | 1.2e-109 | 99.05 | hypothetical protein Csa_012773 [Cucumis sativus] | [more] |
KAG6591970.1 | 1.9e-30 | 49.34 | hypothetical protein SDJN03_14316, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_023535133.1 | 9.3e-30 | 47.86 | mesenchyme-specific cell surface glycoprotein-like [Cucurbita pepo subsp. pepo] | [more] |
KAG6607873.1 | 8.4e-15 | 37.56 | hypothetical protein SDJN03_01215, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
Match Name | E-value | Identity | Description | |
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 37..60 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 193..211 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 169..211 |
Relationships
The following mRNA feature(s) are a part of this gene:
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