CSPI04G21960 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G21960
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	60S ribosomal protein L27
Location	Chr4: 20442162 .. 20442569 (+)
RNA-Seq Expression	CSPI04G21960
Synteny	CSPI04G21960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAAGTTCATCAAACCGAACAAAGCTGTTGTCGTTCTTCAAGGCCGATTTGCTGGCCGGAAAGCTGTGATCGTCCGAAACTTCGATGAAGGAACCCGCGACCGCCCCTACGGCCATTGCTTGGTAGCAGGGATGAAAAAGTACCCGAGCAAGGTCGTTCGCAAAGATTCAAAGAAAAAGACAGACAAAAAATCGAGAGTGAAGGCATTCATCAAACTTGTGAATTACCAGCACATTATGCCGACGAGGTACACGCTCGACGTTGATCTCAAGGATGTGGTTAATGTGGATTGCTTACAGTCCAAAGTGTCGAAGGTTGCGGCGTCGAAGGAGATCAAAAAGAGACTGGAGGACAGGTTTAAAACCGGAAAGAACAGGTGGTTTTTCACCAAGCTTAGGTTCTGA

mRNA sequence

ATGGTGAAGTTCATCAAACCGAACAAAGCTGTTGTCGTTCTTCAAGGCCGATTTGCTGGCCGGAAAGCTGTGATCGTCCGAAACTTCGATGAAGGAACCCGCGACCGCCCCTACGGCCATTGCTTGGTAGCAGGGATGAAAAAGTACCCGAGCAAGGTCGTTCGCAAAGATTCAAAGAAAAAGACAGACAAAAAATCGAGAGTGAAGGCATTCATCAAACTTGTGAATTACCAGCACATTATGCCGACGAGGTACACGCTCGACGTTGATCTCAAGGATGTGGTTAATGTGGATTGCTTACAGTCCAAAGTGTCGAAGGTTGCGGCGTCGAAGGAGATCAAAAAGAGACTGGAGGACAGGTTTAAAACCGGAAAGAACAGGTGGTTTTTCACCAAGCTTAGGTTCTGA

Coding sequence (CDS)

ATGGTGAAGTTCATCAAACCGAACAAAGCTGTTGTCGTTCTTCAAGGCCGATTTGCTGGCCGGAAAGCTGTGATCGTCCGAAACTTCGATGAAGGAACCCGCGACCGCCCCTACGGCCATTGCTTGGTAGCAGGGATGAAAAAGTACCCGAGCAAGGTCGTTCGCAAAGATTCAAAGAAAAAGACAGACAAAAAATCGAGAGTGAAGGCATTCATCAAACTTGTGAATTACCAGCACATTATGCCGACGAGGTACACGCTCGACGTTGATCTCAAGGATGTGGTTAATGTGGATTGCTTACAGTCCAAAGTGTCGAAGGTTGCGGCGTCGAAGGAGATCAAAAAGAGACTGGAGGACAGGTTTAAAACCGGAAAGAACAGGTGGTTTTTCACCAAGCTTAGGTTCTGA

Protein sequence

MVKFIKPNKAVVVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKKKTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDRFKTGKNRWFFTKLRF*

Homology

[Close]

BLAST of CSPI04G21960 vs. ExPASy Swiss-Prot
Match: P51419 (60S ribosomal protein L27-3 OS=Arabidopsis thaliana OX=3702 GN=RPL27C PE=2 SV=2)

HSP 1 Score: 221.1 bits (562), Expect = 7.7e-57
Identity = 106/135 (78.52%), Postives = 122/135 (90.37%), Query Frame = 0


Query: 1   MVKFIKPNKAVVVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60
           MVKF+K NKAV++LQGR+AG+KAVI+++FD+G RDRPYGHCLVAG+KKYPSKV+RKDS K
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KT KKSRVK FIKLVNYQH+MPTRYTLDVDLK+V  +D LQSK  KVAA KE K +LE+R
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CSPI04G21960 vs. ExPASy Swiss-Prot
Match: Q05462 (60S ribosomal protein L27 OS=Pisum sativum OX=3888 GN=RPL27 PE=2 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 1.7e-56
Identity = 106/135 (78.52%), Postives = 122/135 (90.37%), Query Frame = 0


Query: 1   MVKFIKPNKAVVVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60
           MVKF+KPNKAV++LQGR+AG+KAVIV+ FD+GTR++PYGHCLVAG+KK+PSKV++KDS K
Sbjct: 1   MVKFLKPNKAVILLQGRYAGKKAVIVKTFDDGTREKPYGHCLVAGIKKFPSKVIKKDSAK 60

Query: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KT KKSRVKAF+KLVNYQH+MPTRYTLDVDLKD V  D LQSK  KV A KE KK LE+R
Sbjct: 61  KTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDAVVPDVLQSKDKKVTALKETKKSLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CSPI04G21960 vs. ExPASy Swiss-Prot
Match: Q8LCL3 (60S ribosomal protein L27-2 OS=Arabidopsis thaliana OX=3702 GN=RPL27B PE=2 SV=2)

HSP 1 Score: 214.2 bits (544), Expect = 9.4e-55
Identity = 103/135 (76.30%), Postives = 120/135 (88.89%), Query Frame = 0


Query: 1   MVKFIKPNKAVVVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60
           MVKF+K NKAV++LQGR+AG+KAVI+++FD+GT DR YGHCLVAG+KKYPSKV+RKDS K
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KT KKSRVK FIKLVNYQH+MPTRYTLDVDLK+V  +D L+SK  KV A KE K +LE+R
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CSPI04G21960 vs. ExPASy Swiss-Prot
Match: P41101 (60S ribosomal protein L27 OS=Solanum tuberosum OX=4113 GN=RPL27 PE=2 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.3e-51
Identity = 104/139 (74.82%), Postives = 116/139 (83.45%), Query Frame = 0


Query: 1   MVKFIKPNKAVVVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60
           M KF+KPNKAV++LQG++AGRKAVIVR FDEGTRDRPYGHCLVAG+ +YP KV+RKDS K
Sbjct: 1   MEKFLKPNKAVILLQGKYAGRKAVIVRAFDEGTRDRPYGHCLVAGISRYPKKVIRKDSAK 60

Query: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDL----KDVVNVDCLQSKVSKVAASKEIKKR 120
           K  KKSRVKAFIKLVNY HIMPTRYTLD DL    KDVVN D LQ++  KV A +  K R
Sbjct: 61  KAGKKSRVKAFIKLVNYNHIMPTRYTLDEDLKDVVKDVVNADVLQARDKKVTA-RRTKAR 120

Query: 121 LEDRFKTGKNRWFFTKLRF 136
           L +RFKTGKNRWFFTKLRF
Sbjct: 121 LAERFKTGKNRWFFTKLRF 138

[Close]

BLAST of CSPI04G21960 vs. ExPASy Swiss-Prot
Match: Q9SKX8 (60S ribosomal protein L27-1 OS=Arabidopsis thaliana OX=3702 GN=RPL27A PE=2 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 4.9e-51
Identity = 95/135 (70.37%), Postives = 116/135 (85.93%), Query Frame = 0


Query: 1   MVKFIKPNKAVVVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60
           MVK +KP KAV++LQGR+ G+KAVIV++FD+GT ++ YGHCLVAG+KKYPSKV+RKDS K
Sbjct: 1   MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KT KKSRVK F K++NYQH+MPTRYTLD+DLK+VV+ D + SK  KV A KE K + E+R
Sbjct: 61  KTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CSPI04G21960 vs. ExPASy TrEMBL
Match: A0A5A7SSA5 (60S ribosomal protein L27 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G003380 PE=3 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 3.5e-68
Identity = 133/135 (98.52%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MVKFIKPNKAVVVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60
           MVKFIKPNKAV+VLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKV+RKDSKK
Sbjct: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60

Query: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR
Sbjct: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CSPI04G21960 vs. ExPASy TrEMBL
Match: A0A1S3CNL3 (60S ribosomal protein L27 OS=Cucumis melo OX=3656 GN=LOC103502503 PE=3 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 3.5e-68
Identity = 133/135 (98.52%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MVKFIKPNKAVVVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60
           MVKFIKPNKAV+VLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKV+RKDSKK
Sbjct: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60

Query: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR
Sbjct: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CSPI04G21960 vs. ExPASy TrEMBL
Match: A0A0A0L310 (60S ribosomal protein L27 OS=Cucumis sativus OX=3659 GN=Csa_4G618420 PE=3 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 1.0e-67
Identity = 134/135 (99.26%), Postives = 134/135 (99.26%), Query Frame = 0


Query: 1   MVKFIKPNKAVVVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60
           MVKFIKPNKAVVVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK
Sbjct: 1   MVKFIKPNKAVVVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60

Query: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KTDKKSRVKAFIKL NYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR
Sbjct: 61  KTDKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CSPI04G21960 vs. ExPASy TrEMBL
Match: A0A6J1FNC2 (60S ribosomal protein L27 OS=Cucurbita moschata OX=3662 GN=LOC111445816 PE=3 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 3.2e-66
Identity = 130/135 (96.30%), Postives = 133/135 (98.52%), Query Frame = 0


Query: 1   MVKFIKPNKAVVVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60
           MVKFIKPNKAV+VLQGRFAGRKAVIVRNFD+GTRDRPYGHCLVAGMKKYPSKV+RKDS K
Sbjct: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTK 60

Query: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KT KKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR
Sbjct: 61  KTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CSPI04G21960 vs. ExPASy TrEMBL
Match: A0A0A0K3A4 (60S ribosomal protein L27 OS=Cucumis sativus OX=3659 GN=Csa_7G209560 PE=3 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 5.5e-66
Identity = 129/135 (95.56%), Postives = 134/135 (99.26%), Query Frame = 0


Query: 1   MVKFIKPNKAVVVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60
           MVKFIKPNKAV+VLQGR+AGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK
Sbjct: 1   MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60

Query: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KTDKKSRVKAFIKL NYQHIMPTRYTLDVDLKDVVNVDCLQS+VSKV+ASKEIKKRLE+R
Sbjct: 61  KTDKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCLQSRVSKVSASKEIKKRLENR 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CSPI04G21960 vs. NCBI nr
Match: XP_004145994.3 (60S ribosomal protein L27-3 [Cucumis sativus] >KAE8649796.1 hypothetical protein Csa_012871 [Cucumis sativus])

HSP 1 Score: 268.1 bits (684), Expect = 4.2e-68
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MVKFIKPNKAVVVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60
           MVKFIKPNKAVVVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK
Sbjct: 1   MVKFIKPNKAVVVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60

Query: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR
Sbjct: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CSPI04G21960 vs. NCBI nr
Match: XP_008464678.1 (PREDICTED: 60S ribosomal protein L27-3-like [Cucumis melo] >KAA0032926.1 60S ribosomal protein L27-3-like [Cucumis melo var. makuwa] >TYK28074.1 60S ribosomal protein L27-3-like [Cucumis melo var. makuwa])

HSP 1 Score: 267.3 bits (682), Expect = 7.2e-68
Identity = 133/135 (98.52%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MVKFIKPNKAVVVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60
           MVKFIKPNKAV+VLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKV+RKDSKK
Sbjct: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60

Query: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR
Sbjct: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CSPI04G21960 vs. NCBI nr
Match: XP_022940098.1 (60S ribosomal protein L27-3-like [Cucurbita moschata])

HSP 1 Score: 260.8 bits (665), Expect = 6.7e-66
Identity = 130/135 (96.30%), Postives = 133/135 (98.52%), Query Frame = 0


Query: 1   MVKFIKPNKAVVVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60
           MVKFIKPNKAV+VLQGRFAGRKAVIVRNFD+GTRDRPYGHCLVAGMKKYPSKV+RKDS K
Sbjct: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTK 60

Query: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KT KKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR
Sbjct: 61  KTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CSPI04G21960 vs. NCBI nr
Match: KAG6608000.1 (60S ribosomal protein L27-3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 259.2 bits (661), Expect = 2.0e-65
Identity = 129/135 (95.56%), Postives = 132/135 (97.78%), Query Frame = 0


Query: 1   MVKFIKPNKAVVVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60
           MVKFIKPNKAV+VLQGRFAGRKAVIVRNFD+GTRDRPYGHCLVAGMKKYPSKV+RKDS K
Sbjct: 78  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTK 137

Query: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KT KKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVN DCLQSKVSKVAASKEIKKRLEDR
Sbjct: 138 KTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNADCLQSKVSKVAASKEIKKRLEDR 197

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 198 FKTGKNRWFFTKLRF 212

[Close]

BLAST of CSPI04G21960 vs. NCBI nr
Match: XP_011658974.2 (60S ribosomal protein L27 [Cucumis sativus] >KAE8646052.1 hypothetical protein Csa_015825 [Cucumis sativus])

HSP 1 Score: 258.1 bits (658), Expect = 4.4e-65
Identity = 127/135 (94.07%), Postives = 134/135 (99.26%), Query Frame = 0


Query: 1   MVKFIKPNKAVVVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60
           MVKFIKPNKAV+VLQGR+AGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKV+RKDSKK
Sbjct: 1   MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60

Query: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KT+KKSRVKAFIKL NYQHIMPTRYTLDVDLKDVVNVDCLQS+VSKV+ASKEIKKRLE+R
Sbjct: 61  KTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCLQSRVSKVSASKEIKKRLENR 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CSPI04G21960 vs. TAIR 10
Match: AT4G15000.1 (Ribosomal L27e protein family )

HSP 1 Score: 221.1 bits (562), Expect = 5.5e-58
Identity = 106/135 (78.52%), Postives = 122/135 (90.37%), Query Frame = 0


Query: 1   MVKFIKPNKAVVVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60
           MVKF+K NKAV++LQGR+AG+KAVI+++FD+G RDRPYGHCLVAG+KKYPSKV+RKDS K
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KT KKSRVK FIKLVNYQH+MPTRYTLDVDLK+V  +D LQSK  KVAA KE K +LE+R
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CSPI04G21960 vs. TAIR 10
Match: AT3G22230.1 (Ribosomal L27e protein family )

HSP 1 Score: 214.2 bits (544), Expect = 6.7e-56
Identity = 103/135 (76.30%), Postives = 120/135 (88.89%), Query Frame = 0


Query: 1   MVKFIKPNKAVVVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60
           MVKF+K NKAV++LQGR+AG+KAVI+++FD+GT DR YGHCLVAG+KKYPSKV+RKDS K
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KT KKSRVK FIKLVNYQH+MPTRYTLDVDLK+V  +D L+SK  KV A KE K +LE+R
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CSPI04G21960 vs. TAIR 10
Match: AT2G32220.1 (Ribosomal L27e protein family )

HSP 1 Score: 201.8 bits (512), Expect = 3.4e-52
Identity = 95/135 (70.37%), Postives = 116/135 (85.93%), Query Frame = 0


Query: 1   MVKFIKPNKAVVVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60
           MVK +KP KAV++LQGR+ G+KAVIV++FD+GT ++ YGHCLVAG+KKYPSKV+RKDS K
Sbjct: 1   MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KT KKSRVK F K++NYQH+MPTRYTLD+DLK+VV+ D + SK  KV A KE K + E+R
Sbjct: 61  KTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CSPI04G21960 vs. TAIR 10
Match: AT4G15000.2 (Ribosomal L27e protein family )

HSP 1 Score: 194.9 bits (494), Expect = 4.2e-50
Identity = 94/123 (76.42%), Postives = 110/123 (89.43%), Query Frame = 0


Query: 1   MVKFIKPNKAVVVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60
           MVKF+K NKAV++LQGR+AG+KAVI+++FD+G RDRPYGHCLVAG+KKYPSKV+RKDS K
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KT KKSRVK FIKLVNYQH+MPTRYTLDVDLK+V  +D LQSK  KVAA KE K +LE+R
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEER 120

Query: 121 FKT 124
           FKT
Sbjct: 121 FKT 123

The following BLAST results are available for this feature:

BLAST of CSPI04G21960 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P51419	7.7e-57	78.52	60S ribosomal protein L27-3 OS=Arabidopsis thaliana OX=3702 GN=RPL27C PE=2 SV=2	[more]
Q05462	1.7e-56	78.52	60S ribosomal protein L27 OS=Pisum sativum OX=3888 GN=RPL27 PE=2 SV=1	[more]
Q8LCL3	9.4e-55	76.30	60S ribosomal protein L27-2 OS=Arabidopsis thaliana OX=3702 GN=RPL27B PE=2 SV=2	[more]
P41101	1.3e-51	74.82	60S ribosomal protein L27 OS=Solanum tuberosum OX=4113 GN=RPL27 PE=2 SV=1	[more]
Q9SKX8	4.9e-51	70.37	60S ribosomal protein L27-1 OS=Arabidopsis thaliana OX=3702 GN=RPL27A PE=2 SV=1	[more]

BLAST of CSPI04G21960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SSA5	3.5e-68	98.52	60S ribosomal protein L27 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3CNL3	3.5e-68	98.52	60S ribosomal protein L27 OS=Cucumis melo OX=3656 GN=LOC103502503 PE=3 SV=1	[more]
A0A0A0L310	1.0e-67	99.26	60S ribosomal protein L27 OS=Cucumis sativus OX=3659 GN=Csa_4G618420 PE=3 SV=1	[more]
A0A6J1FNC2	3.2e-66	96.30	60S ribosomal protein L27 OS=Cucurbita moschata OX=3662 GN=LOC111445816 PE=3 SV=...	[more]
A0A0A0K3A4	5.5e-66	95.56	60S ribosomal protein L27 OS=Cucumis sativus OX=3659 GN=Csa_7G209560 PE=3 SV=1	[more]

BLAST of CSPI04G21960 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145994.3	4.2e-68	100.00	60S ribosomal protein L27-3 [Cucumis sativus] >KAE8649796.1 hypothetical protein...	[more]
XP_008464678.1	7.2e-68	98.52	PREDICTED: 60S ribosomal protein L27-3-like [Cucumis melo] >KAA0032926.1 60S rib...	[more]
XP_022940098.1	6.7e-66	96.30	60S ribosomal protein L27-3-like [Cucurbita moschata]	[more]
KAG6608000.1	2.0e-65	95.56	60S ribosomal protein L27-3, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_011658974.2	4.4e-65	94.07	60S ribosomal protein L27 [Cucumis sativus] >KAE8646052.1 hypothetical protein C...	[more]

BLAST of CSPI04G21960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G15000.1	5.5e-58	78.52	Ribosomal L27e protein family	[more]
AT3G22230.1	6.7e-56	76.30	Ribosomal L27e protein family	[more]
AT2G32220.1	3.4e-52	70.37	Ribosomal L27e protein family	[more]
AT4G15000.2	4.2e-50	76.42	Ribosomal L27e protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005824	KOW	SMART	SM00739	kow_9	coord: 4..31 e-value: 0.0049 score: 26.1
IPR001141	Ribosomal protein L27e	PFAM	PF01777	Ribosomal_L27e	coord: 52..135 e-value: 3.5E-31 score: 107.4
IPR001141	Ribosomal protein L27e	PANTHER	PTHR10497	60S RIBOSOMAL PROTEIN L27	coord: 1..135
IPR038655	Ribosomal protein L27e superfamily	GENE3D	2.30.30.770		coord: 1..135 e-value: 2.6E-59 score: 201.2
None	No IPR available	PANTHER	PTHR10497:SF17	60S RIBOSOMAL PROTEIN L27	coord: 1..135
IPR018262	Ribosomal protein L27e, conserved site	PROSITE	PS01107	RIBOSOMAL_L27E	coord: 124..135
IPR041991	Eukaryotic Ribosomal Protein L27, KOW domain	CDD	cd06090	KOW_RPL27	coord: 6..88 e-value: 2.43254E-36 score: 117.67
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 2..135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G21960.1	CSPI04G21960.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0003735	structural constituent of ribosome