CSPI04G21200 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G21200
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr4: 19661189 .. 19661696 (+)
RNA-Seq Expression	CSPI04G21200
Synteny	CSPI04G21200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAGGCAATATATTATGACCTGTGGTTTGGTATAGAGGGTAGTGGAGAGAGTGGTCACGTTGGAGATCTTGTGGAGTTTTGCGGGATCGTAGTAGTCCAAGATGATGTACAGACTGAGGAGATTTTTTATAACGGAGAGAGGATGTTTGTCAAGGATGGGAGAGAGAGCGTCATTGGCAACAACAAGGACAATGATAGTCTGACGGCTGTTTATCTCGTTGGCAAGTCTGGTTTGTTGGAGATAATTATTGAAAATGTTGCACTGAGGGAAGTCTTTTAGCATGTCGATAATATTGTGGACGAAGACGATGGCAGCAATGGTGGTGAAGGCAAGGAAGAGGAGAAGAGATTTGGAAGCTACCATGGAAAATAGAGAAAGAGAAGAGAGAAAGGATGGGTTTGGGAGAAGAGGGAAATCAGGGGAGGGGTCTGTGAGAGAAGAGGAAAATCGGTGGAAGTCTGAAAAAATAAAAAAGGAACGTTTGGGGCAGCACAAAACCTAA

mRNA sequence

ATGAAGAAGGCAATATATTATGACCTGTGGTTTGGTATAGAGGGTAGTGGAGAGAGTGGTCACGTTGGAGATCTTGTGGAGTTTTGCGGGATCGTAGTAGTCCAAGATGATGTACAGACTGAGGAGATTTTTTATAACGGAGAGAGGATGTTTGTCAAGGATGGGAGAGAGAGCGTCATTGGCAACAACAAGGACAATGATAGTCTGACGGCTGTTTATCTCGTTGGCAAGTCTGGGAAGTCTTTTAGCATGTCGATAATATTGTGGACGAAGACGATGGCAGCAATGGTGGTGAAGGCAAGGAAGAGGAGAAGAGATTTGGAAGCTACCATGGAAAATAGAGAAAGAGAAGAGAGAAAGGATGGGTTTGGGAGAAGAGGGAAATCAGGGGAGGGGTCTGTGAGAGAAGAGGAAAATCGGTGGAAGTCTGAAAAAATAAAAAAGGAACGTTTGGGGCAGCACAAAACCTAA

Coding sequence (CDS)

ATGAAGAAGGCAATATATTATGACCTGTGGTTTGGTATAGAGGGTAGTGGAGAGAGTGGTCACGTTGGAGATCTTGTGGAGTTTTGCGGGATCGTAGTAGTCCAAGATGATGTACAGACTGAGGAGATTTTTTATAACGGAGAGAGGATGTTTGTCAAGGATGGGAGAGAGAGCGTCATTGGCAACAACAAGGACAATGATAGTCTGACGGCTGTTTATCTCGTTGGCAAGTCTGGGAAGTCTTTTAGCATGTCGATAATATTGTGGACGAAGACGATGGCAGCAATGGTGGTGAAGGCAAGGAAGAGGAGAAGAGATTTGGAAGCTACCATGGAAAATAGAGAAAGAGAAGAGAGAAAGGATGGGTTTGGGAGAAGAGGGAAATCAGGGGAGGGGTCTGTGAGAGAAGAGGAAAATCGGTGGAAGTCTGAAAAAATAAAAAAGGAACGTTTGGGGCAGCACAAAACCTAA

Protein sequence

MKKAIYYDLWFGIEGSGESGHVGDLVEFCGIVVVQDDVQTEEIFYNGERMFVKDGRESVIGNNKDNDSLTAVYLVGKSGKSFSMSIILWTKTMAAMVVKARKRRRDLEATMENREREERKDGFGRRGKSGEGSVREEENRWKSEKIKKERLGQHKT*

Homology

[Close]

BLAST of CSPI04G21200 vs. ExPASy TrEMBL
Match: A0A0A0KZJ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G577370 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 1.6e-64
Identity = 136/153 (88.89%), Postives = 136/153 (88.89%), Query Frame = 0


Query: 1   MKKAIYYDLWFGIEGSGESGHVGDLVEFCGIVVVQDDVQTEEIFYNGERMFVKDGRESVI 60
           MKKAIYYDLWFGIEGSGESGHVGDLVEFCGIVVVQDDVQTEEIFYNGERMFVKDGRESVI
Sbjct: 1   MKKAIYYDLWFGIEGSGESGHVGDLVEFCGIVVVQDDVQTEEIFYNGERMFVKDGRESVI 60

Query: 61  GNNKDNDSLTAVYLVGKSGKSFSMSIILWTKTMAAMVVKARKRRRDLEATMENREREERK 120
           GNNKDNDSLTAVYLVGKS                AMVVKARKRRRDLEATMENREREERK
Sbjct: 61  GNNKDNDSLTAVYLVGKS----------------AMVVKARKRRRDLEATMENREREERK 120

Query: 121 DGFGRRGKSGEGSVREEENRWKSEKIKKERLGQ 154
           DGFGRRGKSGEGSVREEENRWKSEKIKKE LGQ
Sbjct: 121 DGFGRRGKSGEGSVREEENRWKSEKIKKEHLGQ 137

[Close]

BLAST of CSPI04G21200 vs. ExPASy TrEMBL
Match: A0A0A0K4L9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G290465 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 3.4e-11
Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 18 ESGHVGDLVEFCGIVVVQDDVQTEEIFYNGERMFVKDGRESVIGNNKDNDSL 70
          E   VGDLVEFCGIVVVQDD++TEEIF N ERMFV+DGRES   N+KD DSL
Sbjct: 15 EKTTVGDLVEFCGIVVVQDDMETEEIFDNEERMFVEDGRESDNSNDKDGDSL 66

[Close]

BLAST of CSPI04G21200 vs. ExPASy TrEMBL
Match: A0A059C3M7 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_E01366 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.2e-05
Identity = 28/67 (41.79%), Postives = 40/67 (59.70%), Query Frame = 0


Query: 13  IEGSGESGHVGDLVEFCGIVVVQDDVQTEEIFYNGERMFVKDGRESVIGNNKDNDSLTAV 72
           ++G GE G +GDLVE  G+ VV+DDV  E +  +GE +   +G    +   +D D L AV
Sbjct: 299 VQGGGEGGALGDLVELLGVEVVEDDVDGELVLDDGEGLLAGEGGHGAVVEGEDGDGLAAV 358

Query: 73  YLVGKSG 80
            LVG+ G
Sbjct: 359 DLVGQLG 365

[Close]

BLAST of CSPI04G21200 vs. NCBI nr
Match: KGN44423.1 (hypothetical protein Csa_016298 [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 7.1e-11
Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 18 ESGHVGDLVEFCGIVVVQDDVQTEEIFYNGERMFVKDGRESVIGNNKDNDSL 70
          E   VGDLVEFCGIVVVQDD++TEEIF N ERMFV+DGRES   N+KD DSL
Sbjct: 15 EKTTVGDLVEFCGIVVVQDDMETEEIFDNEERMFVEDGRESDNSNDKDGDSL 66

[Close]

BLAST of CSPI04G21200 vs. NCBI nr
Match: KCW72927.1 (hypothetical protein EUGRSUZ_E01366 [Eucalyptus grandis])

HSP 1 Score: 58.9 bits (141), Expect = 4.5e-05
Identity = 28/67 (41.79%), Postives = 40/67 (59.70%), Query Frame = 0


Query: 13  IEGSGESGHVGDLVEFCGIVVVQDDVQTEEIFYNGERMFVKDGRESVIGNNKDNDSLTAV 72
           ++G GE G +GDLVE  G+ VV+DDV  E +  +GE +   +G    +   +D D L AV
Sbjct: 299 VQGGGEGGALGDLVELLGVEVVEDDVDGELVLDDGEGLLAGEGGHGAVVEGEDGDGLAAV 358

Query: 73  YLVGKSG 80
            LVG+ G
Sbjct: 359 DLVGQLG 365

The following BLAST results are available for this feature:

BLAST of CSPI04G21200 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI04G21200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZJ2	1.6e-64	88.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G577370 PE=4 SV=1	[more]
A0A0A0K4L9	3.4e-11	75.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G290465 PE=4 SV=1	[more]
A0A059C3M7	2.2e-05	41.79	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_E01366 PE=4 SV...	[more]

BLAST of CSPI04G21200 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44423.1	7.1e-11	75.00	hypothetical protein Csa_016298 [Cucumis sativus]	[more]
KCW72927.1	4.5e-05	41.79	hypothetical protein EUGRSUZ_E01366 [Eucalyptus grandis]	[more]

BLAST of CSPI04G21200 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 97..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 106..156

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G21200.1	CSPI04G21200.1	mRNA