CSPI04G20560 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI04G20560
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTy3/gypsy retrotransposon protein
LocationChr4: 18815378 .. 18816517 (+)
RNA-Seq ExpressionCSPI04G20560
SyntenyCSPI04G20560
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGTTTTGCCAAGTCACGGATAGGGTATTTGAGGCACATTATTTCAAAGAAGGGCGTGGAAGTCAATCTTGAGATAATATGAGCTATTAGGGAATGGCCAATTCCAACTAATGTTCGAGAGGTACGAGGATTTCTAGGATTGACTGGTTATTATAGAAGATTTGTCCAAAATTATGGTAATATTGCCGGACCATTAATTCAGTTATTGAAAGCGGGTGCCTACAAATGGAGTGCAGAAGCTGAAATCTCCTTTGCAAAATTGAAGAGGGCAATGATGACTTTGCCGAAATTTAGTTTGCCATTCGAAATAGAAATGGATGCTTCGGGGTATGGAGTTGGGGTAGTCTTGACACAAGCTAAGAAACCTATTTCTTACTTTAGTCGAACTCTGAGTATGAGAGATAGATCGCGGCCAGTTTATGAAAGAGAGTTGATTGCCGTGGTGTTTGCAGTTCAAGGGTGGCGGCCAGGTTTGTTGGGAAGGTAATCTTTAGTAAAAACATATCAGAGGTCATTGAAATTTCTTCTTGAGCAAAGAGTGATACAACCACAATATAAAAAGTGGACAGTGAAATTATTGGGATATTCGTTTGAAGTGATGTATAAACCGGGTTTGAAGAATAAGGCGGGTGATGCTCTTTCTAGAGTACCCCTAACAGTTCATCGTAATCATATATCGGCACCAACATTGATTGATTTAACAATTATTCAAGAAGAGAGATAGACCGAGATCCGAAGTTGAAGGAGTTCAAAAGCACTGTGGAGAAACACCAATCTGATATTCCAAATTTTTCGATACATCAAGGTGTGTTGCAGTTTAAGGGAAGGTTAGTTATTTCCAAAACTTCATCTCTCTTATCCACTATTTTGCATACCTACCATGATTCGGTGTTTGGAGGGCATTCTGGATTTTTGCGAACATATAAGAGAATGATGGGAGAATTATATTGGGATGGAATGAAGAGTGACAAAAAATATTGTGCGGAATGTTTGATTTGTCAAAGAAATAAAACATTGGCTCTTTCACCAGTAGGGTTATTGATTCCATTAGAAATTCCTGATACTATATGGAGTGATATTTCTATGGATTTTATAGATGGATTACCCAAGGCTGCTGGACTTTGTGATGGTGGATAG

mRNA sequence

ATGCAGTTTTGCCAAGTCACGGATAGGGTACGAGGATTTCTAGGATTGACTGGTTATTATAGAAGATTTGTCCAAAATTATGGTAATATTGCCGGACCATTAATTCAGTTATTGAAAGCGGGTGCCTACAAATGGAGTGCAGAAGCTGAAATCTCCTTTGCAAAATTGAAGAGGGCAATGATGACTTTGCCGAAATTTAGTTTGCCATTCGAAATAGAAATGGATGCTTCGGGGTATGGAGTTGGGGTAGTCTTGACACAAGCTAAGAAACCTATTTCTTACTTTAGTCGAACTCTGAGTATGAGAGATAGATCGCGGCCAGTTTATGAAAGAGAGTTGATTGCCGTGGTGTTTGCAGTTCAAGGGTGGCGGCCAGGTTTGTTGGGAAGAAGAGAGATAGACCGAGATCCGAAGTTGAAGGAGTTCAAAAGCACTGTGGAGAAACACCAATCTGATATTCCAAATTTTTCGATACATCAAGGTGTGTTGCAGTTTAAGGGAAGGTTAGTTATTTCCAAAACTTCATCTCTCTTATCCACTATTTTGCATACCTACCATGATTCGGTGTTTGGAGGGCATTCTGGATTTTTGCGAACATATAAGAGAATGATGGGAGAATTATATTGGGATGGAATGAAGAGTGACAAAAAATATTGTGCGGAATGTTTGATTTGTCAAAGAAATAAAACATTGGCTCTTTCACCAGTAGGGTTATTGATTCCATTAGAAATTCCTGATACTATATGGAGTGATATTTCTATGGATTTTATAGATGGATTACCCAAGGCTGCTGGACTTTGTGATGGTGGATAG

Coding sequence (CDS)

ATGCAGTTTTGCCAAGTCACGGATAGGGTACGAGGATTTCTAGGATTGACTGGTTATTATAGAAGATTTGTCCAAAATTATGGTAATATTGCCGGACCATTAATTCAGTTATTGAAAGCGGGTGCCTACAAATGGAGTGCAGAAGCTGAAATCTCCTTTGCAAAATTGAAGAGGGCAATGATGACTTTGCCGAAATTTAGTTTGCCATTCGAAATAGAAATGGATGCTTCGGGGTATGGAGTTGGGGTAGTCTTGACACAAGCTAAGAAACCTATTTCTTACTTTAGTCGAACTCTGAGTATGAGAGATAGATCGCGGCCAGTTTATGAAAGAGAGTTGATTGCCGTGGTGTTTGCAGTTCAAGGGTGGCGGCCAGGTTTGTTGGGAAGAAGAGAGATAGACCGAGATCCGAAGTTGAAGGAGTTCAAAAGCACTGTGGAGAAACACCAATCTGATATTCCAAATTTTTCGATACATCAAGGTGTGTTGCAGTTTAAGGGAAGGTTAGTTATTTCCAAAACTTCATCTCTCTTATCCACTATTTTGCATACCTACCATGATTCGGTGTTTGGAGGGCATTCTGGATTTTTGCGAACATATAAGAGAATGATGGGAGAATTATATTGGGATGGAATGAAGAGTGACAAAAAATATTGTGCGGAATGTTTGATTTGTCAAAGAAATAAAACATTGGCTCTTTCACCAGTAGGGTTATTGATTCCATTAGAAATTCCTGATACTATATGGAGTGATATTTCTATGGATTTTATAGATGGATTACCCAAGGCTGCTGGACTTTGTGATGGTGGATAG

Protein sequence

MQFCQVTDRVRGFLGLTGYYRRFVQNYGNIAGPLIQLLKAGAYKWSAEAEISFAKLKRAMMTLPKFSLPFEIEMDASGYGVGVVLTQAKKPISYFSRTLSMRDRSRPVYERELIAVVFAVQGWRPGLLGRREIDRDPKLKEFKSTVEKHQSDIPNFSIHQGVLQFKGRLVISKTSSLLSTILHTYHDSVFGGHSGFLRTYKRMMGELYWDGMKSDKKYCAECLICQRNKTLALSPVGLLIPLEIPDTIWSDISMDFIDGLPKAAGLCDGG*
Homology
BLAST of CSPI04G20560 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.1e-17
Identity = 59/180 (32.78%), Postives = 96/180 (53.33%), Query Frame = 0

Query: 10  VRGFLGLTGYYRRFVQNYGNIAGPLIQLLKAGAYKWSAEAEI--SFAKLKR-----AMMT 69
           +R FLGLTGYYR+F+ NY +IA P+   LK      + + E   +F KLK       ++ 
Sbjct: 441 IRAFLGLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQ 500

Query: 70  LPKFSLPFEIEMDASGYGVGVVLTQAKKPISYFSRTLSMRDRSRPVYERELIAVVFAVQG 129
           LP F   F +  DAS   +G VL+Q   PIS+ SRTL+  + +    E+EL+A+V+A + 
Sbjct: 501 LPDFEKKFVLTTDASNLALGAVLSQNGHPISFISRTLNDHELNYSAIEKELLAIVWATKT 560

Query: 130 WRPGLLGRR-EIDRDPKLKEFKSTVEKHQSDIPNFSIHQGVLQFKGRLVISKTSSLLSTI 182
           +R  LLGR+  I  D +   +   +++  + +  + +     QFK   +  K +S+   +
Sbjct: 561 FRHYLLGRQFLIASDHQPLRWLHNLKEPGAKLERWRVRLSEYQFKIDYIKGKENSVADAL 620

BLAST of CSPI04G20560 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.1e-17
Identity = 52/135 (38.52%), Postives = 80/135 (59.26%), Query Frame = 0

Query: 10  VRGFLGLTGYYRRFVQNYGNIAGPLIQLLKAGAY--KWSAEAEISFAKLK-----RAMMT 69
           ++ FLGLTGYYR+F+ N+ +IA P+ + LK        + E + +F KLK       ++ 
Sbjct: 442 IKAFLGLTGYYRKFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILK 501

Query: 70  LPKFSLPFEIEMDASGYGVGVVLTQAKKPISYFSRTLSMRDRSRPVYERELIAVVFAVQG 129
           +P F+  F +  DAS   +G VL+Q   P+SY SRTL+  + +    E+EL+A+V+A + 
Sbjct: 502 VPDFTKKFTLTTDASDVALGAVLSQDGHPLSYISRTLNEHEINYSTIEKELLAIVWATKT 561

Query: 130 WRPGLLGRR-EIDRD 137
           +R  LLGR  EI  D
Sbjct: 562 FRHYLLGRHFEISSD 576

BLAST of CSPI04G20560 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.7e-16
Identity = 55/179 (30.73%), Postives = 91/179 (50.84%), Query Frame = 0

Query: 9   RVRGFLGLTGYYRRFVQNYGNIAGPLIQLLK----AGAYKWSAEAEISFAKLKR------ 68
           +VR FLGL  YYR F++++  IA P+  +LK    + +   S +  + F + +R      
Sbjct: 416 KVRSFLGLASYYRVFIKDFAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRL 475

Query: 69  --------AMMTLPKFSLPFEIEMDASGYGVGVVLTQAKKPISYFSRTLSMRDRSRPVYE 128
                    ++  P F  PF++  DAS  G+G VL+Q  +PI+  SRTL   +++    E
Sbjct: 476 RNILASEDVILKYPDFKKPFDLTTDASASGIGAVLSQEGRPITMISRTLKQPEQNYATNE 535

Query: 129 RELIAVVFAVQGWRPGLLGRREI----DRDP------------KLKEFKSTVEKHQSDI 154
           REL+A+V+A+   +  L G REI    D  P            K+K +KS +++H + +
Sbjct: 536 RELLAIVWALGKLQNFLYGSREINIFTDHQPLTFAVADRNTNAKIKRWKSYIDQHNAKV 594

BLAST of CSPI04G20560 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 7.2e-14
Identity = 53/182 (29.12%), Postives = 92/182 (50.55%), Query Frame = 0

Query: 10  VRGFLGLTGYYRRFVQNYGNIAGPLIQLLKAGAY---KWSAEAEI----------SFAKL 69
           ++ FLG+T YYR+F+Q+Y  +A PL  L + G Y   K S  +++          SF  L
Sbjct: 358 LKRFLGMTSYYRKFIQDYAKVAKPLTNLTR-GLYANIKSSQSSKVPITLDETALQSFNDL 417

Query: 70  KRAM-----MTLPKFSLPFEIEMDASGYGVGVVLTQ----AKKPISYFSRTLSMRDRSRP 129
           K  +     +  P F+ PF +  DAS + +G VL+Q      +PI+Y SR+L+  + +  
Sbjct: 418 KSILCSSEILAFPCFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYA 477

Query: 130 VYERELIAVVFAVQGWRPGLLGRREI----DRDP------------KLKEFKSTVEKHQS 154
             E+E++A+++++   R  L G   I    D  P            KLK +K+ +E++  
Sbjct: 478 TIEKEMLAIIWSLDNLRAYLYGAGTIKVYTDHQPLTFALGNRNFNAKLKRWKARIEEYNC 537

BLAST of CSPI04G20560 vs. ExPASy Swiss-Prot
Match: P92523 (Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 GN=AtMg00860 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.1e-13
Identity = 36/63 (57.14%), Postives = 45/63 (71.43%), Query Frame = 0

Query: 7   TDRVRGFLGLTGYYRRFVQNYGNIAGPLIQLLKAGAYKWSAEAEISFAKLKRAMMTLPKF 66
           T  +RGFLGLTGYYRRFV+NYG I  PL +LLK  + KW+  A ++F  LK A+ TLP  
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAFKALKGAVTTLPVL 122

Query: 67  SLP 70
           +LP
Sbjct: 123 ALP 125

BLAST of CSPI04G20560 vs. ExPASy TrEMBL
Match: A0A5A7V7S9 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold205G001230 PE=4 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 1.9e-97
Identity = 190/338 (56.21%), Postives = 223/338 (65.98%), Query Frame = 0

Query: 10   VRGFLGLTGYYRRFVQNYGNIAGPLIQLLKAGAYKWSAEAEISFAKLKRAMMTL-----P 69
            +RGFLGLTGYYRRFVQNYG+I+ PLIQLLKAGAYKW+ E E +F KLK+AMMTL     P
Sbjct: 714  MRGFLGLTGYYRRFVQNYGSISAPLIQLLKAGAYKWTEETEAAFEKLKKAMMTLPVLAMP 773

Query: 70   KFSLPFEIEMDASGYGVGVVLTQAKKPISYFSRTLSMRDRSRPVYERELIAVVFAVQGWR 129
             F+LPFEIE DASG+GVG VL QAK+P++YFS+ LSMRDR+RPVYERELIAVV+AVQ WR
Sbjct: 774  DFNLPFEIESDASGFGVGAVLVQAKRPVAYFSKVLSMRDRARPVYERELIAVVWAVQRWR 833

Query: 130  PGLLGR------------------------------------------------------ 189
            P LLGR                                                      
Sbjct: 834  PYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEVLYKPGLENKAADALSR 893

Query: 190  ----------------------REIDRDPKLKEFKSTVEKHQSDIPNFSIHQGVLQFKGR 249
                                  RE+ +DP L+E  S +E+   +IP ++ HQG+L+FKGR
Sbjct: 894  IGPTAHLNQLTAPALLDVEVIQREVRKDPALREIISLIEEQGIEIPRYTCHQGILKFKGR 953

Query: 250  LVISKTSSLLSTILHTYHDSVFGGHSGFLRTYKRMMGELYWDGMKSD-KKYCAECLICQR 266
            LV+SKTS L+ TI+HTYHDSVFGGHSGFLRTYKRM GELYW GMK D +KYC EC+ICQ+
Sbjct: 954  LVLSKTSILIPTIMHTYHDSVFGGHSGFLRTYKRMAGELYWKGMKKDVQKYCDECMICQK 1013

BLAST of CSPI04G20560 vs. ExPASy TrEMBL
Match: A0A5A7TDM4 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G002330 PE=4 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 2.3e-95
Identity = 186/338 (55.03%), Postives = 224/338 (66.27%), Query Frame = 0

Query: 10  VRGFLGLTGYYRRFVQNYGNIAGPLIQLLKAGAYKWSAEAEISFAKLKRAMMTL-----P 69
           +RGFLGLTGYYRRFVQNYG+I+ PL QLLK+GAYKW+ E E +F KLK+AMMTL     P
Sbjct: 306 LRGFLGLTGYYRRFVQNYGSISAPLTQLLKSGAYKWTEETEAAFEKLKKAMMTLPVLAMP 365

Query: 70  KFSLPFEIEMDASGYGVGVVLTQAKKPISYFSRTLSMRDRSRPVYERELIAVVFAVQGWR 129
            F+LPFEIE DASG+GVG VL QAK+P++YFS+ LSMRDR+RPVYERELIAVV+AVQ WR
Sbjct: 366 DFNLPFEIESDASGFGVGAVLVQAKRPVAYFSKVLSMRDRARPVYERELIAVVWAVQRWR 425

Query: 130 PGLLGR------------------------------------------------------ 189
           P LLGR                                                      
Sbjct: 426 PYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEVLYKPGLENKAADALSR 485

Query: 190 ----------------------REIDRDPKLKEFKSTVEKHQSDIPNFSIHQGVLQFKGR 249
                                 +E+ +DP L+E  S +E+   +IP+++ HQG+L+FKGR
Sbjct: 486 IGPTAHLNQLTAPALLDVEVIQKEVRKDPALREIISMIEEQGIEIPHYTCHQGILKFKGR 545

Query: 250 LVISKTSSLLSTILHTYHDSVFGGHSGFLRTYKRMMGELYWDGMKSD-KKYCAECLICQR 266
           LV+SKTS+L+ TI+HTYHDSVFGGHSGFLRTYKRM GELYW GMK D +KYC EC+ICQ+
Sbjct: 546 LVLSKTSTLIPTIMHTYHDSVFGGHSGFLRTYKRMAGELYWKGMKKDVQKYCDECMICQK 605

BLAST of CSPI04G20560 vs. ExPASy TrEMBL
Match: A0A5D3CW07 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold32G00650 PE=4 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 2.3e-95
Identity = 186/338 (55.03%), Postives = 224/338 (66.27%), Query Frame = 0

Query: 10  VRGFLGLTGYYRRFVQNYGNIAGPLIQLLKAGAYKWSAEAEISFAKLKRAMMTL-----P 69
           +RGFLGLTGYYRRFVQNYG+I+ PL QLLK+GAYKW+ E E +F KLK+AMMTL     P
Sbjct: 306 LRGFLGLTGYYRRFVQNYGSISAPLTQLLKSGAYKWTEETEAAFEKLKKAMMTLPVLAMP 365

Query: 70  KFSLPFEIEMDASGYGVGVVLTQAKKPISYFSRTLSMRDRSRPVYERELIAVVFAVQGWR 129
            F+LPFEIE DASG+GVG VL QAK+P++YFS+ LSMRDR+RPVYERELIAVV+AVQ WR
Sbjct: 366 DFNLPFEIESDASGFGVGAVLVQAKRPVAYFSKVLSMRDRARPVYERELIAVVWAVQRWR 425

Query: 130 PGLLGR------------------------------------------------------ 189
           P LLGR                                                      
Sbjct: 426 PYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEVLYKPGLENKAADALSR 485

Query: 190 ----------------------REIDRDPKLKEFKSTVEKHQSDIPNFSIHQGVLQFKGR 249
                                 +E+ +DP L+E  S +E+   +IP+++ HQG+L+FKGR
Sbjct: 486 IGPTAHLNQLTAPALLDVEVIQKEVRKDPALREIISMIEEQGIEIPHYTCHQGILKFKGR 545

Query: 250 LVISKTSSLLSTILHTYHDSVFGGHSGFLRTYKRMMGELYWDGMKSD-KKYCAECLICQR 266
           LV+SKTS+L+ TI+HTYHDSVFGGHSGFLRTYKRM GELYW GMK D +KYC EC+ICQ+
Sbjct: 546 LVLSKTSTLIPTIMHTYHDSVFGGHSGFLRTYKRMAGELYWKGMKKDVQKYCDECMICQK 605

BLAST of CSPI04G20560 vs. ExPASy TrEMBL
Match: A0A5D3CXB1 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G001180 PE=4 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 3.0e-95
Identity = 184/338 (54.44%), Postives = 222/338 (65.68%), Query Frame = 0

Query: 10   VRGFLGLTGYYRRFVQNYGNIAGPLIQLLKAGAYKWSAEAEISFAKLKRAMMTL-----P 69
            +RGFLGLTGYYRRFVQNYG+I+ PL QLLK+GAYKW+ E E +F KLK+AMMTL     P
Sbjct: 912  LRGFLGLTGYYRRFVQNYGSISAPLTQLLKSGAYKWTEETETAFEKLKKAMMTLPVLAMP 971

Query: 70   KFSLPFEIEMDASGYGVGVVLTQAKKPISYFSRTLSMRDRSRPVYERELIAVVFAVQGWR 129
             F+LPFEIE DASG+GVG VL Q KKP++YFS+ LS RDR+RPVYEREL+AVV+AVQ WR
Sbjct: 972  DFNLPFEIESDASGFGVGAVLVQDKKPVAYFSKVLSTRDRARPVYERELMAVVWAVQRWR 1031

Query: 130  PGLLGR------------------------------------------------------ 189
            P LLGR                                                      
Sbjct: 1032 PYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEVLYKPGLENKAADALSR 1091

Query: 190  ----------------------REIDRDPKLKEFKSTVEKHQSDIPNFSIHQGVLQFKGR 249
                                  +E+ +DP L+E  S +E+   +IP+++ HQG+L+FKGR
Sbjct: 1092 IGPTAHLNQLTAPALLDVEVIQKEVRKDPALREILSMIEEQGIEIPHYTCHQGILKFKGR 1151

Query: 250  LVISKTSSLLSTILHTYHDSVFGGHSGFLRTYKRMMGELYWDGMKSD-KKYCAECLICQR 266
            LV+SK S+L+ TI+HTYHDSVFGGHSGFLRTYKRM GELYW GMK D +KYC EC+ICQ+
Sbjct: 1152 LVLSKASTLIPTIMHTYHDSVFGGHSGFLRTYKRMAGELYWKGMKKDVQKYCEECMICQK 1211

BLAST of CSPI04G20560 vs. ExPASy TrEMBL
Match: A0A5A7U2S1 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold163G00940 PE=4 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 3.0e-95
Identity = 184/338 (54.44%), Postives = 222/338 (65.68%), Query Frame = 0

Query: 10   VRGFLGLTGYYRRFVQNYGNIAGPLIQLLKAGAYKWSAEAEISFAKLKRAMMTL-----P 69
            +RGFLGLTGYYRRFVQNYG+I+ PL QLLK+GAYKW+ E E +F KLK+AMMTL     P
Sbjct: 912  LRGFLGLTGYYRRFVQNYGSISAPLTQLLKSGAYKWTEETETAFEKLKKAMMTLPVLAMP 971

Query: 70   KFSLPFEIEMDASGYGVGVVLTQAKKPISYFSRTLSMRDRSRPVYERELIAVVFAVQGWR 129
             F+LPFEIE DASG+GVG VL Q KKP++YFS+ LS RDR+RPVYEREL+AVV+AVQ WR
Sbjct: 972  DFNLPFEIESDASGFGVGAVLVQDKKPVAYFSKVLSTRDRARPVYERELMAVVWAVQRWR 1031

Query: 130  PGLLGR------------------------------------------------------ 189
            P LLGR                                                      
Sbjct: 1032 PYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIVKLLGYSFEVLYKPGLENKAADALSR 1091

Query: 190  ----------------------REIDRDPKLKEFKSTVEKHQSDIPNFSIHQGVLQFKGR 249
                                  +E+ +DP L+E  S +E+   +IP+++ HQG+L+FKGR
Sbjct: 1092 IGPTAHLNQLTAPALLDVEVIQKEVRKDPALREILSMIEEQGIEIPHYTCHQGILKFKGR 1151

Query: 250  LVISKTSSLLSTILHTYHDSVFGGHSGFLRTYKRMMGELYWDGMKSD-KKYCAECLICQR 266
            LV+SK S+L+ TI+HTYHDSVFGGHSGFLRTYKRM GELYW GMK D +KYC EC+ICQ+
Sbjct: 1152 LVLSKASTLIPTIMHTYHDSVFGGHSGFLRTYKRMAGELYWKGMKKDVQKYCEECMICQK 1211

BLAST of CSPI04G20560 vs. NCBI nr
Match: KAA0063300.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 365.5 bits (937), Expect = 3.9e-97
Identity = 190/338 (56.21%), Postives = 223/338 (65.98%), Query Frame = 0

Query: 10   VRGFLGLTGYYRRFVQNYGNIAGPLIQLLKAGAYKWSAEAEISFAKLKRAMMTL-----P 69
            +RGFLGLTGYYRRFVQNYG+I+ PLIQLLKAGAYKW+ E E +F KLK+AMMTL     P
Sbjct: 714  MRGFLGLTGYYRRFVQNYGSISAPLIQLLKAGAYKWTEETEAAFEKLKKAMMTLPVLAMP 773

Query: 70   KFSLPFEIEMDASGYGVGVVLTQAKKPISYFSRTLSMRDRSRPVYERELIAVVFAVQGWR 129
             F+LPFEIE DASG+GVG VL QAK+P++YFS+ LSMRDR+RPVYERELIAVV+AVQ WR
Sbjct: 774  DFNLPFEIESDASGFGVGAVLVQAKRPVAYFSKVLSMRDRARPVYERELIAVVWAVQRWR 833

Query: 130  PGLLGR------------------------------------------------------ 189
            P LLGR                                                      
Sbjct: 834  PYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEVLYKPGLENKAADALSR 893

Query: 190  ----------------------REIDRDPKLKEFKSTVEKHQSDIPNFSIHQGVLQFKGR 249
                                  RE+ +DP L+E  S +E+   +IP ++ HQG+L+FKGR
Sbjct: 894  IGPTAHLNQLTAPALLDVEVIQREVRKDPALREIISLIEEQGIEIPRYTCHQGILKFKGR 953

Query: 250  LVISKTSSLLSTILHTYHDSVFGGHSGFLRTYKRMMGELYWDGMKSD-KKYCAECLICQR 266
            LV+SKTS L+ TI+HTYHDSVFGGHSGFLRTYKRM GELYW GMK D +KYC EC+ICQ+
Sbjct: 954  LVLSKTSILIPTIMHTYHDSVFGGHSGFLRTYKRMAGELYWKGMKKDVQKYCDECMICQK 1013

BLAST of CSPI04G20560 vs. NCBI nr
Match: KAA0041253.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 358.6 bits (919), Expect = 4.7e-95
Identity = 186/338 (55.03%), Postives = 224/338 (66.27%), Query Frame = 0

Query: 10  VRGFLGLTGYYRRFVQNYGNIAGPLIQLLKAGAYKWSAEAEISFAKLKRAMMTL-----P 69
           +RGFLGLTGYYRRFVQNYG+I+ PL QLLK+GAYKW+ E E +F KLK+AMMTL     P
Sbjct: 306 LRGFLGLTGYYRRFVQNYGSISAPLTQLLKSGAYKWTEETEAAFEKLKKAMMTLPVLAMP 365

Query: 70  KFSLPFEIEMDASGYGVGVVLTQAKKPISYFSRTLSMRDRSRPVYERELIAVVFAVQGWR 129
            F+LPFEIE DASG+GVG VL QAK+P++YFS+ LSMRDR+RPVYERELIAVV+AVQ WR
Sbjct: 366 DFNLPFEIESDASGFGVGAVLVQAKRPVAYFSKVLSMRDRARPVYERELIAVVWAVQRWR 425

Query: 130 PGLLGR------------------------------------------------------ 189
           P LLGR                                                      
Sbjct: 426 PYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEVLYKPGLENKAADALSR 485

Query: 190 ----------------------REIDRDPKLKEFKSTVEKHQSDIPNFSIHQGVLQFKGR 249
                                 +E+ +DP L+E  S +E+   +IP+++ HQG+L+FKGR
Sbjct: 486 IGPTAHLNQLTAPALLDVEVIQKEVRKDPALREIISMIEEQGIEIPHYTCHQGILKFKGR 545

Query: 250 LVISKTSSLLSTILHTYHDSVFGGHSGFLRTYKRMMGELYWDGMKSD-KKYCAECLICQR 266
           LV+SKTS+L+ TI+HTYHDSVFGGHSGFLRTYKRM GELYW GMK D +KYC EC+ICQ+
Sbjct: 546 LVLSKTSTLIPTIMHTYHDSVFGGHSGFLRTYKRMAGELYWKGMKKDVQKYCDECMICQK 605

BLAST of CSPI04G20560 vs. NCBI nr
Match: TYK16053.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 358.6 bits (919), Expect = 4.7e-95
Identity = 186/338 (55.03%), Postives = 224/338 (66.27%), Query Frame = 0

Query: 10  VRGFLGLTGYYRRFVQNYGNIAGPLIQLLKAGAYKWSAEAEISFAKLKRAMMTL-----P 69
           +RGFLGLTGYYRRFVQNYG+I+ PL QLLK+GAYKW+ E E +F KLK+AMMTL     P
Sbjct: 306 LRGFLGLTGYYRRFVQNYGSISAPLTQLLKSGAYKWTEETEAAFEKLKKAMMTLPVLAMP 365

Query: 70  KFSLPFEIEMDASGYGVGVVLTQAKKPISYFSRTLSMRDRSRPVYERELIAVVFAVQGWR 129
            F+LPFEIE DASG+GVG VL QAK+P++YFS+ LSMRDR+RPVYERELIAVV+AVQ WR
Sbjct: 366 DFNLPFEIESDASGFGVGAVLVQAKRPVAYFSKVLSMRDRARPVYERELIAVVWAVQRWR 425

Query: 130 PGLLGR------------------------------------------------------ 189
           P LLGR                                                      
Sbjct: 426 PYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEVLYKPGLENKAADALSR 485

Query: 190 ----------------------REIDRDPKLKEFKSTVEKHQSDIPNFSIHQGVLQFKGR 249
                                 +E+ +DP L+E  S +E+   +IP+++ HQG+L+FKGR
Sbjct: 486 IGPTAHLNQLTAPALLDVEVIQKEVRKDPALREIISMIEEQGIEIPHYTCHQGILKFKGR 545

Query: 250 LVISKTSSLLSTILHTYHDSVFGGHSGFLRTYKRMMGELYWDGMKSD-KKYCAECLICQR 266
           LV+SKTS+L+ TI+HTYHDSVFGGHSGFLRTYKRM GELYW GMK D +KYC EC+ICQ+
Sbjct: 546 LVLSKTSTLIPTIMHTYHDSVFGGHSGFLRTYKRMAGELYWKGMKKDVQKYCDECMICQK 605

BLAST of CSPI04G20560 vs. NCBI nr
Match: TYK23090.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 358.2 bits (918), Expect = 6.2e-95
Identity = 184/338 (54.44%), Postives = 222/338 (65.68%), Query Frame = 0

Query: 10   VRGFLGLTGYYRRFVQNYGNIAGPLIQLLKAGAYKWSAEAEISFAKLKRAMMTL-----P 69
            +RGFLGLTGYYRRFVQNYG+I+ PL QLLK+GAYKW+ E E +F KLK+AMMTL     P
Sbjct: 852  LRGFLGLTGYYRRFVQNYGSISAPLTQLLKSGAYKWTEETETAFEKLKKAMMTLPVLAMP 911

Query: 70   KFSLPFEIEMDASGYGVGVVLTQAKKPISYFSRTLSMRDRSRPVYERELIAVVFAVQGWR 129
             F+LPFEIE DASG+GVG VL Q KKP++YFS+ LS RDR+RPVYEREL+AVV+AVQ WR
Sbjct: 912  DFNLPFEIESDASGFGVGAVLVQDKKPVAYFSKVLSTRDRARPVYERELMAVVWAVQRWR 971

Query: 130  PGLLGR------------------------------------------------------ 189
            P LLGR                                                      
Sbjct: 972  PYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEVLYKPGLENKAADALSR 1031

Query: 190  ----------------------REIDRDPKLKEFKSTVEKHQSDIPNFSIHQGVLQFKGR 249
                                  +E+ +DP L+E  S +E+   +IP+++ HQG+L+FKGR
Sbjct: 1032 IGPTAHLNQLTAPALLDVEVIQKEVRKDPALREILSMIEEQGIEIPHYTCHQGILKFKGR 1091

Query: 250  LVISKTSSLLSTILHTYHDSVFGGHSGFLRTYKRMMGELYWDGMKSD-KKYCAECLICQR 266
            LV+SK S+L+ TI+HTYHDSVFGGHSGFLRTYKRM GELYW GMK D +KYC EC+ICQ+
Sbjct: 1092 LVLSKASTLIPTIMHTYHDSVFGGHSGFLRTYKRMAGELYWKGMKKDVQKYCEECMICQK 1151

BLAST of CSPI04G20560 vs. NCBI nr
Match: TYK15990.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 358.2 bits (918), Expect = 6.2e-95
Identity = 184/338 (54.44%), Postives = 222/338 (65.68%), Query Frame = 0

Query: 10   VRGFLGLTGYYRRFVQNYGNIAGPLIQLLKAGAYKWSAEAEISFAKLKRAMMTL-----P 69
            +RGFLGLTGYYRRFVQNYG+I+ PL QLLK+GAYKW+ E E +F KLK+AMMTL     P
Sbjct: 912  LRGFLGLTGYYRRFVQNYGSISAPLTQLLKSGAYKWTEETETAFEKLKKAMMTLPVLAMP 971

Query: 70   KFSLPFEIEMDASGYGVGVVLTQAKKPISYFSRTLSMRDRSRPVYERELIAVVFAVQGWR 129
             F+LPFEIE DASG+GVG VL Q KKP++YFS+ LS RDR+RPVYEREL+AVV+AVQ WR
Sbjct: 972  DFNLPFEIESDASGFGVGAVLVQDKKPVAYFSKVLSTRDRARPVYERELMAVVWAVQRWR 1031

Query: 130  PGLLGR------------------------------------------------------ 189
            P LLGR                                                      
Sbjct: 1032 PYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEVLYKPGLENKAADALSR 1091

Query: 190  ----------------------REIDRDPKLKEFKSTVEKHQSDIPNFSIHQGVLQFKGR 249
                                  +E+ +DP L+E  S +E+   +IP+++ HQG+L+FKGR
Sbjct: 1092 IGPTAHLNQLTAPALLDVEVIQKEVRKDPALREILSMIEEQGIEIPHYTCHQGILKFKGR 1151

Query: 250  LVISKTSSLLSTILHTYHDSVFGGHSGFLRTYKRMMGELYWDGMKSD-KKYCAECLICQR 266
            LV+SK S+L+ TI+HTYHDSVFGGHSGFLRTYKRM GELYW GMK D +KYC EC+ICQ+
Sbjct: 1152 LVLSKASTLIPTIMHTYHDSVFGGHSGFLRTYKRMAGELYWKGMKKDVQKYCEECMICQK 1211

BLAST of CSPI04G20560 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 77.8 bits (190), Expect = 1.5e-14
Identity = 36/63 (57.14%), Postives = 45/63 (71.43%), Query Frame = 0

Query: 7   TDRVRGFLGLTGYYRRFVQNYGNIAGPLIQLLKAGAYKWSAEAEISFAKLKRAMMTLPKF 66
           T  +RGFLGLTGYYRRFV+NYG I  PL +LLK  + KW+  A ++F  LK A+ TLP  
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAFKALKGAVTTLPVL 122

Query: 67  SLP 70
           +LP
Sbjct: 123 ALP 125

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P208251.1e-1732.78Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste... [more]
P043234.1e-1738.52Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast... [more]
P104012.7e-1630.73Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas... [more]
Q8I7P97.2e-1429.12Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast... [more]
P925232.1e-1357.14Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 ... [more]
Match NameE-valueIdentityDescription
A0A5A7V7S91.9e-9756.21Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5A7TDM42.3e-9555.03Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3CW072.3e-9555.03Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5D3CXB13.0e-9554.44Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7U2S13.0e-9554.44Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
Match NameE-valueIdentityDescription
KAA0063300.13.9e-9756.21Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0041253.14.7e-9555.03Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
TYK16053.14.7e-9555.03Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa][more]
TYK23090.16.2e-9554.44Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
TYK15990.16.2e-9554.44Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
ATMG00860.11.5e-1457.14DNA/RNA polymerases superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 1..80
e-value: 2.1E-16
score: 61.7
IPR041588Integrase zinc-binding domainPFAMPF17921Integrase_H2C2coord: 175..230
e-value: 4.6E-14
score: 52.2
IPR041577Reverse transcriptase/retrotransposon-derived protein, RNase H-like domainPFAMPF17919RT_RNaseH_2coord: 45..131
e-value: 1.7E-20
score: 72.9
NoneNo IPR availableGENE3D1.10.340.70coord: 140..229
e-value: 1.2E-12
score: 49.9
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 167..263
NoneNo IPR availablePANTHERPTHR24559:SF360SUBFAMILY NOT NAMEDcoord: 13..126
NoneNo IPR availablePANTHERPTHR24559:SF360SUBFAMILY NOT NAMEDcoord: 167..263
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 13..126
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 9..132

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G20560.1CSPI04G20560.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009987 cellular process