CSPI04G18890 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI04G18890
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr4: 16405198 .. 16405479 (-)
RNA-Seq ExpressionCSPI04G18890
SyntenyCSPI04G18890
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTGCTTTGCCTCCATGAAGGTGATCATAGATCTCCTGAACATGGAAGTCATTCTCCATAGCCAACCAGACATGGACATAACCTATGATGAGACATTGTACAAAACCTTATTGGAACAAAGCAATTTGTCAAGGTTGTCAGGTTTGTATATAGATGCAAGTTGGAATCCTTTCGAACCGTACAGATCTTGGATGAATATTTATGAGATACGAGGAAATGTCACTGTGAAAGACAACAACAAAAAGGATACAAATCAAGAAGATGTACACTACTTTATG

mRNA sequence

ATGGCCTGCTTTGCCTCCATGAAGGTGATCATAGATCTCCTGAACATGGAAGTCATTCTCCATAGCCAACCAGACATGGACATAACCTATGATGAGACATTGTACAAAACCTTATTGGAACAAAGCAATTTGTCAAGGTTGTCAGGTTTGTATATAGATGCAAGTTGGAATCCTTTCGAACCGTACAGATCTTGGATGAATATTTATGAGATACGAGGAAATGTCACTGTGAAAGACAACAACAAAAAGGATACAAATCAAGAAGATGTACACTACTTTATG

Coding sequence (CDS)

ATGGCCTGCTTTGCCTCCATGAAGGTGATCATAGATCTCCTGAACATGGAAGTCATTCTCCATAGCCAACCAGACATGGACATAACCTATGATGAGACATTGTACAAAACCTTATTGGAACAAAGCAATTTGTCAAGGTTGTCAGGTTTGTATATAGATGCAAGTTGGAATCCTTTCGAACCGTACAGATCTTGGATGAATATTTATGAGATACGAGGAAATGTCACTGTGAAAGACAACAACAAAAAGGATACAAATCAAGAAGATGTACACTACTTTATG

Protein sequence

MACFASMKVIIDLLNMEVILHSQPDMDITYDETLYKTLLEQSNLSRLSGLYIDASWNPFEPYRSWMNIYEIRGNVTVKDNNKKDTNQEDVHYFM
Homology
[Close]
BLAST of CSPI04G18890 vs. ExPASy TrEMBL
Match: A0A0A0L3G1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G420170 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 4.0e-39
Identity = 82/88 (93.18%), Postives = 85/88 (96.59%), Query Frame = 0 

Query: 7  MKVIIDLLNMEVILHSQPDMDITYDETLYKTLLEQSNLSRLSGLYIDASWNPFEPYRSWM 66
          MKVIIDLLNMEVILHSQPDMDITYDETLYKTLLEQSNLSRLSGLY+DASWNPFEPYRSWM
Sbjct: 1  MKVIIDLLNMEVILHSQPDMDITYDETLYKTLLEQSNLSRLSGLYMDASWNPFEPYRSWM 60

Query: 67 NIYEIRGNVTVKDNNKKDTNQEDVHYFM 95
          NIYEIRGNVTVKDNNKKDT QED+  F+
Sbjct: 61 NIYEIRGNVTVKDNNKKDTGQEDLKGFI 88

[Close]
BLAST of CSPI04G18890 vs. NCBI nr
Match: KAE8653201.1 (hypothetical protein Csa_023921, partial [Cucumis sativus])

HSP 1 Score: 68.6 bits (166), Expect = 3.4e-08
Identity = 35/61 (57.38%), Postives = 45/61 (73.77%), Query Frame = 0 

Query: 4  FASMKVIIDLLNMEVILHSQPDMDITYDETLYKTLLEQSNLSRLSGLYIDASWNPFEPYR 63
          F   +V+++LLNM++I+H QP +DIT DETLYKTLLEQS+LSR S         PFEPY+
Sbjct: 8  FGFYEVVMNLLNMKIIIHIQPCLDITCDETLYKTLLEQSSLSR-SSFVCGYKLKPFEPYK 67

Query: 64 S 65
          S
Sbjct: 68 S 67

The following BLAST results are available for this feature:
BLAST of CSPI04G18890 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI04G18890 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L3G14.0e-3993.18Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G420170 PE=4 SV=1[more]
BLAST of CSPI04G18890 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8653201.13.4e-0857.38hypothetical protein Csa_023921, partial [Cucumis sativus][more]
BLAST of CSPI04G18890 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G18890.1CSPI04G18890.1mRNA