CSPI04G18750 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI04G18750
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionCACTA en-spm transposon protein
LocationChr4: 16282039 .. 16282508 (+)
RNA-Seq ExpressionCSPI04G18750
SyntenyCSPI04G18750
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGCAGAAATAATGCAATCTAACTTTCCGAGTAATACGCATGAGGAAGACTATTTCCTTTATCTAGACGCGTTGGATAACGCATGTGGTTCGTCGTCAGTAGACGACACTTCAGGTTCGTAATAACTAGCATACTTAACACAATTTCTCTCAACGAATCATGTTGTTAAGTTATGCTTATTGTATCTAATAAACAATCGTTTTCAGTAAATCCCTCTCATCCGGCACCCACTCCCACTGTGAGGAGAGTACGACGATATTCTCGAAACATAGATGTCGAGCGATACGTACAGCAGAATGAGAGCATTCCCATTTCCATCCTCCCTAAAGGGGATAGACCTGTCTTAGCACAAGCCCCTCGTTTCAGTTGCATGATCGGTGTGTTGACACAAGACAAGTTTCCTATTCAACCTCTGAAGTGGGCAGATGTACCACTAGAGTGCATCAAGGTCGTCAAGGAGGCCTAA

mRNA sequence

ATGTCTGCAGAAATAATGCAATCTAACTTTCCGAGTAATACGCATGAGGAAGACTATTTCCTTTATCTAGACGCGTTGGATAACGCATGTGGTTCGTCGTCAGTAGACGACACTTCAGTAAATCCCTCTCATCCGGCACCCACTCCCACTGTGAGGAGAGTACGACGATATTCTCGAAACATAGATGTCGAGCGATACGTACAGCAGAATGAGAGCATTCCCATTTCCATCCTCCCTAAAGGGGATAGACCTGTCTTAGCACAAGCCCCTCGTTTCAGTTGCATGATCGGTGTGTTGACACAAGACAAGTTTCCTATTCAACCTCTGAAGTGGGCAGATGTACCACTAGAGTGCATCAAGGTCGTCAAGGAGGCCTAA

Coding sequence (CDS)

ATGTCTGCAGAAATAATGCAATCTAACTTTCCGAGTAATACGCATGAGGAAGACTATTTCCTTTATCTAGACGCGTTGGATAACGCATGTGGTTCGTCGTCAGTAGACGACACTTCAGTAAATCCCTCTCATCCGGCACCCACTCCCACTGTGAGGAGAGTACGACGATATTCTCGAAACATAGATGTCGAGCGATACGTACAGCAGAATGAGAGCATTCCCATTTCCATCCTCCCTAAAGGGGATAGACCTGTCTTAGCACAAGCCCCTCGTTTCAGTTGCATGATCGGTGTGTTGACACAAGACAAGTTTCCTATTCAACCTCTGAAGTGGGCAGATGTACCACTAGAGTGCATCAAGGTCGTCAAGGAGGCCTAA

Protein sequence

MSAEIMQSNFPSNTHEEDYFLYLDALDNACGSSSVDDTSVNPSHPAPTPTVRRVRRYSRNIDVERYVQQNESIPISILPKGDRPVLAQAPRFSCMIGVLTQDKFPIQPLKWADVPLECIKVVKEA*
Homology
BLAST of CSPI04G18750 vs. ExPASy TrEMBL
Match: A0A5A7SSV3 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G00850 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 6.0e-14
Identity = 56/127 (44.09%), Postives = 75/127 (59.06%), Query Frame = 0

Query: 1   MSAEIMQSNFPSNTHEED--YFLYLDALDNACG--SSSVDDTSVNPSHPAPTPTVRRVRR 60
           MS  IM S++P N  + D  +  + D LDN  G  SS  DDT+ + S    TPT RR R 
Sbjct: 120 MSTAIMSSSYPRNFMKTDAMFLEFEDDLDNITGGLSSVGDDTAGSSSQQPATPTPRR-RA 179

Query: 61  YSRNIDVERYVQQNESIPISILPKGDRPVLAQAPRFSCMIGVLTQDKFPIQPLKWADVPL 120
           +SR +++ER V  N  IP++I P  ++P+   A RFS  IG   +  FPI+ LKWADV  
Sbjct: 180 HSRLLELERQVAINGRIPMTIAPGVEKPISPHAVRFSQAIGECVRKTFPIRYLKWADVKR 239

Query: 121 ECIKVVK 124
           E I+VVK
Sbjct: 240 EYIEVVK 245

BLAST of CSPI04G18750 vs. ExPASy TrEMBL
Match: A0A5A7VJM4 ((R)-mandelonitrile lyase 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G00030 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 7.8e-14
Identity = 51/118 (43.22%), Postives = 73/118 (61.86%), Query Frame = 0

Query: 9   NFPSNTHEEDYFLY--LDALDNACGSSSVDDTSVNPSHPAPTPTVRRVRRYSRNIDVERY 68
           +FPS+  E   F Y  +DA +NA G+SS+DD SV             VR+  +N+++ERY
Sbjct: 2   SFPSDFDETYAFFYFGVDAFNNAGGTSSMDDMSV-------------VRQQCKNLELERY 61

Query: 69  VQQNESIPISILPKGDRPVLAQAPRFSCMIGVLTQDKFPIQPLKWADVPLECIKVVKE 125
           VQQN  IPISI    D+P+L    RF+C IGVL ++ F ++ LK A+V LE I++V +
Sbjct: 62  VQQNRKIPISIALGQDKPLLPHFVRFNCTIGVLMRETFSVRFLKLANVTLEYIELVMD 106

BLAST of CSPI04G18750 vs. ExPASy TrEMBL
Match: A0A5D3C0E2 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G00330 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.0e-13
Identity = 55/125 (44.00%), Postives = 73/125 (58.40%), Query Frame = 0

Query: 3   AEIMQSNFPSNTHEED--YFLYLDALDN--ACGSSSVDDTSVNPSHPAPTPTVRRVRRYS 62
           + I+ S  PSN  E D  +  + D LDN  A GSSSV D +   S    TPT RR R  S
Sbjct: 203 SSIIMSYRPSNFMETDDMFLQFEDDLDNNIAGGSSSVGDNTAESSSQQTTPTPRR-RAQS 262

Query: 63  RNIDVERYVQQNESIPISILPKGDRPVLAQAPRFSCMIGVLTQDKFPIQPLKWADVPLEC 122
           R +++ER+V  N  IP++I P  ++P+   A RFS  IGV  +  FP++ LKW DV  E 
Sbjct: 263 RLLELERHVAINGRIPMTIAPGAEKPISPHAVRFSQAIGVCVRKTFPVRCLKWTDVGREY 322

Query: 123 IKVVK 124
           I+VVK
Sbjct: 323 IEVVK 326

BLAST of CSPI04G18750 vs. ExPASy TrEMBL
Match: A0A5D3BL58 ((R)-mandelonitrile lyase 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G001090 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.0e-13
Identity = 43/85 (50.59%), Postives = 61/85 (71.76%), Query Frame = 0

Query: 39  SVNPSHPAPTPTVRRVRRYSRNIDVERYVQQNESIPISILPKGDRPVLAQAPRFSCMIGV 98
           ++N   P PT T+RR R++S+N++ +RY+++N  I ISI+  GD+P+     RFS  IGV
Sbjct: 121 TLNADDPQPTRTLRR-RQHSQNLEFDRYIKKNGKILISIVLGGDKPISPHVIRFSNTIGV 180

Query: 99  LTQDKFPIQPLKWADVPLECIKVVK 124
           LT+D FPI  LKWADVP E I+V+K
Sbjct: 181 LTRDTFPIHYLKWADVPPEYIEVIK 204

BLAST of CSPI04G18750 vs. ExPASy TrEMBL
Match: A0A5D3BAV1 ((R)-mandelonitrile lyase 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold282G00450 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.3e-13
Identity = 51/116 (43.97%), Postives = 69/116 (59.48%), Query Frame = 0

Query: 10  FPSNTHEEDYFLY--LDALDNACGSSSVDDTSVNPSHPAPTPTVRRVRRYSRNIDVERYV 69
           FPS   + D   Y  +D  +NA G  S DDTS   +    T T RR ++ S+++ +ERYV
Sbjct: 28  FPSGFDDTDAIFYFDVDVFNNAGGMPSTDDTS--DAFQPSTSTPRR-QQLSKSLKLERYV 87

Query: 70  QQNESIPISILPKGDRPVLAQAPRFSCMIGVLTQDKFPIQPLKWADVPLECIKVVK 124
           QQN  IPISI  + D+P+      FSC I VLT D FPI+  KW +V L+ I++VK
Sbjct: 88  QQNRKIPISIALRRDKPISPHTVHFSCTISVLTWDTFPIRFHKWTNVTLKYIELVK 140

BLAST of CSPI04G18750 vs. NCBI nr
Match: XP_031741168.1 (uncharacterized protein LOC116403757 [Cucumis sativus])

HSP 1 Score: 89.7 bits (221), Expect = 1.9e-14
Identity = 52/119 (43.70%), Postives = 72/119 (60.50%), Query Frame = 0

Query: 9   NFPSNTHEEDYFLY--LDALDNACGSSSVDDTSVNPSHPAPTPTVRRVRRYSRNIDVERY 68
           +F ++  E D   Y  ++  ++A G+SSV DTS      A TP   R R +SRN+ ++RY
Sbjct: 2   SFSASFDESDALFYFNVNKFNDARGTSSVGDTSDGSQPTARTP---RRREHSRNLKLDRY 61

Query: 69  VQQNESIPISILPKGDRPVLAQAPRFSCMIGVLTQDKFPIQPLKWADVPLECIKVVKEA 126
           VQQN  IPISI+P+ D+P+   A  FSC I  LT+D FP   LKW     E IK+VK++
Sbjct: 62  VQQNGKIPISIVPRKDKPISPHAIIFSCTIVELTRDTFPGHALKWTGTTPEYIKLVKDS 117

BLAST of CSPI04G18750 vs. NCBI nr
Match: KAA0033533.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYJ95656.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 87.0 bits (214), Expect = 1.2e-13
Identity = 56/127 (44.09%), Postives = 75/127 (59.06%), Query Frame = 0

Query: 1   MSAEIMQSNFPSNTHEED--YFLYLDALDNACG--SSSVDDTSVNPSHPAPTPTVRRVRR 60
           MS  IM S++P N  + D  +  + D LDN  G  SS  DDT+ + S    TPT RR R 
Sbjct: 120 MSTAIMSSSYPRNFMKTDAMFLEFEDDLDNITGGLSSVGDDTAGSSSQQPATPTPRR-RA 179

Query: 61  YSRNIDVERYVQQNESIPISILPKGDRPVLAQAPRFSCMIGVLTQDKFPIQPLKWADVPL 120
           +SR +++ER V  N  IP++I P  ++P+   A RFS  IG   +  FPI+ LKWADV  
Sbjct: 180 HSRLLELERQVAINGRIPMTIAPGVEKPISPHAVRFSQAIGECVRKTFPIRYLKWADVKR 239

Query: 121 ECIKVVK 124
           E I+VVK
Sbjct: 240 EYIEVVK 245

BLAST of CSPI04G18750 vs. NCBI nr
Match: KAA0065669.1 ((R)-mandelonitrile lyase 1-like [Cucumis melo var. makuwa] >TYK15516.1 (R)-mandelonitrile lyase 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 1.6e-13
Identity = 51/118 (43.22%), Postives = 73/118 (61.86%), Query Frame = 0

Query: 9   NFPSNTHEEDYFLY--LDALDNACGSSSVDDTSVNPSHPAPTPTVRRVRRYSRNIDVERY 68
           +FPS+  E   F Y  +DA +NA G+SS+DD SV             VR+  +N+++ERY
Sbjct: 2   SFPSDFDETYAFFYFGVDAFNNAGGTSSMDDMSV-------------VRQQCKNLELERY 61

Query: 69  VQQNESIPISILPKGDRPVLAQAPRFSCMIGVLTQDKFPIQPLKWADVPLECIKVVKE 125
           VQQN  IPISI    D+P+L    RF+C IGVL ++ F ++ LK A+V LE I++V +
Sbjct: 62  VQQNRKIPISIALGQDKPLLPHFVRFNCTIGVLMRETFSVRFLKLANVTLEYIELVMD 106

BLAST of CSPI04G18750 vs. NCBI nr
Match: TYK04850.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 86.3 bits (212), Expect = 2.1e-13
Identity = 55/125 (44.00%), Postives = 73/125 (58.40%), Query Frame = 0

Query: 3   AEIMQSNFPSNTHEED--YFLYLDALDN--ACGSSSVDDTSVNPSHPAPTPTVRRVRRYS 62
           + I+ S  PSN  E D  +  + D LDN  A GSSSV D +   S    TPT RR R  S
Sbjct: 203 SSIIMSYRPSNFMETDDMFLQFEDDLDNNIAGGSSSVGDNTAESSSQQTTPTPRR-RAQS 262

Query: 63  RNIDVERYVQQNESIPISILPKGDRPVLAQAPRFSCMIGVLTQDKFPIQPLKWADVPLEC 122
           R +++ER+V  N  IP++I P  ++P+   A RFS  IGV  +  FP++ LKW DV  E 
Sbjct: 263 RLLELERHVAINGRIPMTIAPGAEKPISPHAVRFSQAIGVCVRKTFPVRCLKWTDVGREY 322

Query: 123 IKVVK 124
           I+VVK
Sbjct: 323 IEVVK 326

BLAST of CSPI04G18750 vs. NCBI nr
Match: TYJ99709.1 ((R)-mandelonitrile lyase 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 86.3 bits (212), Expect = 2.1e-13
Identity = 43/85 (50.59%), Postives = 61/85 (71.76%), Query Frame = 0

Query: 39  SVNPSHPAPTPTVRRVRRYSRNIDVERYVQQNESIPISILPKGDRPVLAQAPRFSCMIGV 98
           ++N   P PT T+RR R++S+N++ +RY+++N  I ISI+  GD+P+     RFS  IGV
Sbjct: 121 TLNADDPQPTRTLRR-RQHSQNLEFDRYIKKNGKILISIVLGGDKPISPHVIRFSNTIGV 180

Query: 99  LTQDKFPIQPLKWADVPLECIKVVK 124
           LT+D FPI  LKWADVP E I+V+K
Sbjct: 181 LTRDTFPIHYLKWADVPPEYIEVIK 204

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SSV36.0e-1444.09CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5A7VJM47.8e-1443.22(R)-mandelonitrile lyase 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5D3C0E21.0e-1344.00CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5D3BL581.0e-1350.59(R)-mandelonitrile lyase 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5D3BAV11.3e-1343.97(R)-mandelonitrile lyase 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
Match NameE-valueIdentityDescription
XP_031741168.11.9e-1443.70uncharacterized protein LOC116403757 [Cucumis sativus][more]
KAA0033533.11.2e-1344.09CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYJ95656.1 CACTA en-... [more]
KAA0065669.11.6e-1343.22(R)-mandelonitrile lyase 1-like [Cucumis melo var. makuwa] >TYK15516.1 (R)-mande... [more]
TYK04850.12.1e-1344.00CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
TYJ99709.12.1e-1350.59(R)-mandelonitrile lyase 1-like [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G18750.1CSPI04G18750.1mRNA