CSPI04G18100 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G18100
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr4: 15496997 .. 15497269 (-)
RNA-Seq Expression	CSPI04G18100
Synteny	CSPI04G18100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACGAAGGTGCAACTCGGAGTATTAACGTCAGCGGTGGTGTGACACAGGCGAGGTGGAGCCCTTCTGTTTAATTAGAGTTGACTGATAAATTGAACTTTGATGTTGCTTGTAGTTTGGTATGGACAATGTTGTTCATGATGTTCAAGGGTCATCACGTTTCTGCTCATGCTACATGCAAGTCCGGATCCATGTTGGCTGAAGCTGGGGAACTTGTGGCGTTGGTGGAAGGGCTTCCGTTCATTGAATTGGTCGGTATCTCCAAAATGTGA

mRNA sequence

ATGAACGAAGGTGCAACTCGGAGTATTAACGTCAGCGGTGGTGTGACACAGGCGAGGTGGAGCCCTTCTGGTCATCACGTTTCTGCTCATGCTACATGCAAGTCCGGATCCATGTTGGCTGAAGCTGGGGAACTTGTGGCGTTGGTGGAAGGGCTTCCGTTCATTGAATTGGTCGGTATCTCCAAAATGTGA

Coding sequence (CDS)

ATGAACGAAGGTGCAACTCGGAGTATTAACGTCAGCGGTGGTGTGACACAGGCGAGGTGGAGCCCTTCTGGTCATCACGTTTCTGCTCATGCTACATGCAAGTCCGGATCCATGTTGGCTGAAGCTGGGGAACTTGTGGCGTTGGTGGAAGGGCTTCCGTTCATTGAATTGGTCGGTATCTCCAAAATGTGA

Protein sequence

MNEGATRSINVSGGVTQARWSPSGHHVSAHATCKSGSMLAEAGELVALVEGLPFIELVGISKM*

Homology

[Close]

BLAST of CSPI04G18100 vs. ExPASy TrEMBL
Match: A0A0A0KY81 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G372610 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.3e-25
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MNEGATRSINVSGGVTQARWSPSGHHVSAHATCKSGSMLAEAGELVALVEGLPFIELVGI 60
          MNEGATRSINVSGGVTQARWSPSGHHV+AHATCKSGSMLAEAGELVALVEGLPFIELVGI
Sbjct: 1  MNEGATRSINVSGGVTQARWSPSGHHVAAHATCKSGSMLAEAGELVALVEGLPFIELVGI 60

Query: 61 SKM 64
          SKM
Sbjct: 61 SKM 63

[Close]

BLAST of CSPI04G18100 vs. NCBI nr
Match: KGN54590.1 (hypothetical protein Csa_012971 [Cucumis sativus])

HSP 1 Score: 124.8 bits (312), Expect = 2.7e-25
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MNEGATRSINVSGGVTQARWSPSGHHVSAHATCKSGSMLAEAGELVALVEGLPFIELVGI 60
          MNEGATRSINVSGGVTQARWSPSGHHV+AHATCKSGSMLAEAGELVALVEGLPFIELVGI
Sbjct: 1  MNEGATRSINVSGGVTQARWSPSGHHVAAHATCKSGSMLAEAGELVALVEGLPFIELVGI 60

Query: 61 SKM 64
          SKM
Sbjct: 61 SKM 63

The following BLAST results are available for this feature:

BLAST of CSPI04G18100 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI04G18100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KY81	1.3e-25	98.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G372610 PE=4 SV=1	[more]

BLAST of CSPI04G18100 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54590.1	2.7e-25	98.41	hypothetical protein Csa_012971 [Cucumis sativus]	[more]

BLAST of CSPI04G18100 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G18100.1	CSPI04G18100.1	mRNA