CSPI04G16990 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI04G16990
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptiongeneral transcription and DNA repair factor IIH subunit TFB1-1-like
LocationChr4: 14409103 .. 14417326 (-)
RNA-Seq ExpressionCSPI04G16990
SyntenyCSPI04G16990
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGACCGCCGCATGTCTGCCATCGTCCTCTAAGCCCCGGTAAGCACAGGTGAGCATCTCCATCTTCTCAGCCGCCGTTCACCCCCAATCTCTGAACTTGATCACCGACGCAGCCCAGTCGTGACTGCCGTGCCCACGTCCGAAAACGTTTCTGCGACGAGTAGCTTAGGTAACAATGGTCTCTTCGTGTTTCTATTGTTTGTTCTTATTACCCAAGATCTATGTGGTTTCTATTTGGGTTTCTCACTTTGTTTTTGTTTTGGAATCAAGAGTTCGAATGTCCTTAGCACTCTGTCCAGCAAGATTAAGGACGTTGGACGGGCATTCGTGTCAGTTTGGAACCCATTCAAACACGAACCAACAGTTAATTATGCTTTTTTGGCATTAATCAGCGGGTAAGGATTTGTTTTCATGACTTTCAAACTCGTTTAAGTTCGCTTAGTTAGTCTCTATCCTTGGAAATTCTTCCATTTCAATTGAGTTTCAGAGTAATTTTCGTTTAGTTTTTATTTATGAAATTTGATCCAGGCTCGTCCGAGTAACTTTTTGTTGTATAGTTAATTTTCGGATTGAATTGAAGTATTAACAGATCAGTTTCTAACCAATGGAGCCCATATGCGTTTAGGTTGAACCGATTAGATTGTGACTTATTGACATTTGGTGAGAGCTCATTACTACTAGCTCTTGAATTAAGTTTTCGAATTAGTAAGATTAAGTTTTGATTTCAGAAAATTTCTTTAGGTTCATTCGAAGAGGTTTGATTGAGCAGACTGATCTTTATAGGATTGCTAATCAGGTAAGTGGCTCCTATGATGTATGACCTTAGGGCAAGTCATATATGTGTATGGAATTATTTATTGATTATCCATGAATTATTATGATTGAAATGTATGATGAATGATGATTGCATGTGTGTTGATTGACAATGTTTGTTGTTTATGATCGAGATGAGCATGCATGTATTGATAATAAATATACGTGTGTGGGACCTCATGCATGGATGTAATGACATATGCATGATTGAAAACGTTTGTGGTAGTTGCCCATTTAGTAAATTTTGGAGCTTCTGATGGCTGATGCTCAACTCCAATGATTGGTTGCCAATTACCATTAGCCAGGGAAGAGACCTCGAGGTTGCCCACATATGCACCGTAAAAGAATTGGTGGCTAGAGCTACATAGTCCATAGTGCCCTTTCCATAAATAAATGATATGATTTGTCAAGATGATTAGGTCCTACAGATGCATTTGTTGTATGTTTGTGTGTGAGCGCGTCTGTTTATGCATCTAGTTTGAGTGTAGTTTTGGGATTTAATCCTTGCCCCAAGGCTGGCCGTTAGTTTCCAAAAGGCCTCTTCCTATCCTCCCCTTCGCTTTTGTGTTTGCCATTTTTGACTGTTTCTGAAACAATTTGGCATGCTGGATTTCTTGGTTATCTTATGTTTAAGTTGCAAATTGTCACGATCTATCTTTGGATTCATTTTTTGACTTCTTTTTAAAAATTTTTTAATGCACATTTTTACAACGGTTTTGTTTTTGAATATTGGGAAATCTTGAAATTTTTGGAGATTTTGTTGTGATACTATGCTTGTCTGATCTCTTTCTTTTTCTTTTGTTGGGATCTGGTTGTTTATAGTGTTTTAGTGCACAAGATGTTTGGTTTTGGTCAAGCTCTTGGATATGAGTAATCTGTTGTATTGTGGTTATTGGATTGATTTTCTGATAAAACACTGATATAGTGTTTCTATTTTATTGATACATTCAGCAAAAATTACAATATAAAAGAACAAACAAGTAAAAGAACCGTAACCCTCTGCCCTTCCTCTCTTTCAAGGAATGTTGCAGCCCGTTATCCTCATCAAATTCCTCCTCCTTTCTTCCCTCCCCAACTTCCTATTTATAACCAACTAACCACCAACAAATCTAATTACCTTTATACCCCTACCCTATATTAATCTAGGTATCTAACATTTTCGTAACAATTCTTCCAGATTCAAGTCTCTGAGGGGAGGATGGGAACCAAGTATGTCCATAAGAGTGCTAAGTACAAGACCTCAGTTAAGGATCCTGGCACACCCGGCGTTTTGGAAATGGTATTGGTCTAAAGTTTATTATTTTTGTGTCTAATTGTCTACCTATTTATTACCTTCGCTTTTGTTCTCTTTCAATTAATTATATACTTCTGATTTATTGTATTTGATGACCTACTTTACTATTTTCTTAAAGAGTATATGTTTATGTATTTTGTTGAACTGAGTTTATAAGACAATCTTGAAACCGTGCAAGAGATACAAAAATGATTTGTTTTAGGCATTTCATGTTCATTTTTGTAACTTTGTTTGTGAAACATCTTATGTTGTTGCTAAGAAGTATGGACACATGTCAGACACAGGTTCTTAAAACTGCTTTAAGACAAGTGTTCAACATGCAAAATTTTGTGTTCTTAAGTGTCTTTTATTTATTTGTTGTCTTTTATTAGTACAAGAGGAATTATACAATAAGCAAATAAAACAAGGAACATGAGGTGCACCCATGCATCTCAACTAGATTGACTCTTTAAGACACCCTTAGCACTCTCATCATATCCAAACAAGTTAATAAAGACAACAAATAAATGATGTACATAAGCAGGGCTAACATCAGCCTATACAACTTGAAAAGATCATAAGAAACAAAATCTTACAAGACAAGATGTTAATTAACAGCCAGTCAAGAAACAAAGAAATCTTCTAAAACTATAAGGAGCACTAAAGGTTGGGAGCCGAATCTGAAGCTTCAACAAAAAGGGAAAATGAAGACCTGCTGCCAGTTTAGTAAAATATCTTGCATAGAAAAGTCCTTAAATTGTTTCCTTAGGGAGTACCACGAAGAGGCATTCAGACGGTCGAACTCATATCTATCGAACCATAAAGAGGCTTTATTGTGGAAGACCCGCTGATTTCTCTCCAACCACAATTCCACCAAAATCGCCTTGACAGCATTGCACCAAAGCAAGGAAGCAGTTTTCATCAAAACTGGACCAATTATAATCTTTCTAACATTATTCTTGAACTATTTTTCAAAAACCCAGCTGAGATTTTAAAGGTGTGAGAGTTTACTCCAACACCTGGCAGCATAAACACATTCTAACAAAATGTGCTGGAGTTCCTCATGATAATTAAGGCAGAATGGACAGATATGTGGTGAAAGATAGTGAGTGGACAATTTCCTTTGCATAATGGATACACAATTTAAACTACCAAATAGCATAATCCATAGAGTTATACTCACCCTCCTTGGACTTTTTAGATTTCCAAAGGCATTTTTCTAGATAATGATTTAACTGAAAAAGCCTCATTAACTTCCAACAACTAGATTCTTTTATCTGCAACATCGGATAAACTTATTCTTTCTGAAGAACCCAGTAACAGTTGAAAGTCTGTGATTTCAACCTCCTTCTGCAGTGTTCGGAAATTAAGAGACCAAGAGGAAGTGGTTGTGTCCCAATGACCTAGGCACGTATCTACAGCCTCTCCTATGGATTAAGGGCAATTCTGTTATACTCTGAGCACACTTTATTGGAAGGCTCTGGAATTAAGTTGGAAGGTGCGACAATAAGGAACTCTATCATACTTTGTGCATACCTCAAAGTACAAAGTAATGATCCAAATACAACGTGACAATAAGGAACAAAAAGAAACAACCCCAAACACAGTTAAACCAAAAAGAACAAGCCCGAAATCCGAGAGAAGGATAAGAAGAACTATCAAGCCAAAATTAATTTACGTTCTTCAGCAATGGAAATGAGCTGTAGTGTCTTACATACTTGGAACCCTTTCTTTAGAGGGGTTTTGTGTTCTTGTTCTTGTATTCTTTTGGTTTTTCTCAATGAAAACAATTGTTTCTGTAAAGAATCTAACCATATCATTTGTTTAATTAATATGGTTTGACTTTTCTCATTTTGTACAGACAGAGTGCAAGTTTGTATTTAGACCCAGCGATCCCACTTCAGCTTCTAAGCTTGACGTGGAGTTTAGATTTATTAAAGGTACCTACTGTATTGTTCCAAGTTAATATATTTCTGTTACCATTTTTGTGGTATGTTCTATATTCTCATATCTGTAATATTTACATTTTTGGTGAACGATCTATCTTTTCTTTTCATGTTGAGCACCTTCTGTAAGTAGAATTTAACTTGAATTCTTTACTCTATGCCCTGCACTATTCCACGTTACAATTTGTTACTGACTGATGTTTAATCTTGTCTGTGACCTTTATTTCTTGCAACCTTATGTTTGCATAAGATCTCAATGTATCTAAAGTGCACTTATTTTTCAGGCCATAAAAACACTAAGGAAGGATCAAATAAACCACCGTGGCTTAATCTCACCAAGGACCAGGTTTCTAATATTTTGCTAGACATTTTCTAAGGAATTATTGAATTGAGTAAAGGAAAAGGGTTTAATTAAAAGGTACCATAAGTTAGAACATTGGAAATATTACATCATTAAATCATTGTACGTATGATTTTAAAATATTATATTAAATAATAGGTACCATAAGTGAGATGTTGCAGTGGGAGCGTTTCTTCTTGTTTATCGGGTTTCTTTGAGTTAAAGTCATTTGGAATACGTGTTCATCTTGGGATATGTGTTCAATTGAATGTTTTTAATTTTTCTTCCAAGTTTAAGTCTTTATTGATGGAATTTGGTTCTGGTCTTGTATTGGCAAGTCTGTAGTCTTATTTTGTTTCCTCCCGTGTACTTTGAATTATTGAATTGAGTAAAGGAAAAGGGTCTAATTAAAAGGTACCATAAGTTAGAGCATTGGAAATATTACATCATTAAATCGTTGTACGTATTTAAAATATTATATTAAATAATAGGTACCATAAGTGAGATGTTGCAGTGGGAGCGTTTCTTCTTGTTAATCGGGTTTCTTTGAGTTAAAGTCATTTGGAATACGTTTTCATCGTGGGATATGTGTTCAATTGAATTTTTTTAATTTTTCTTCCAAGTTCAAGTATTTATTGATAGAATTTGGTTCTGGTCTTGTATTGGCAAGTGAGTCTTTATTTTGTTTCCTCTCGTGTAATTTGAGCATTAGACAATTTCATTATATCAATGATTCGTAGTGAAAACACTTTTGCCGTTCCTTCTTCCTCCAATGACAGGTCACTTCCCTCTACTTCGTCAGAGTCTTTTGCCTTCATTCCCATTTCCTGTTCTGTGCCCACCAAAATCTTTTCTGGAAAAGCTCCTACTTCCAACTCTTCCTCCGCTGATCTTTCTTTGTCTTCTCTCTCATCCTCGGCCAAATTTGGGTCAAAGGCTAAGTCTAAAAAACATTGAAAATTGATTCTAGATCAGAACCTTTATTATTGGAGGCAAATTGTGCCCTTGTTCACGCCCATTCTCAATTAAACAGGCCTGATCCTCAGAGTTCTCTTCATCCTTATTTTAAATACTTAATTTTCCCTGTGCCTAATTCAAAGGTAAATTTTTTGAGAGGTTCTCCTATCCAAACTCCATTCTCCTCATTGAAAAAGAAGAGTGTATTAGATTTCGACTCTCCTTTTAGTGTGAGCTACGAGGAAGAACATATGCCGAAGTCAGCAGAGAAGGATGACTAAAGATCCTTTAGAATCTGATCTCAATACCCTGCTTCAGACAGAAGAGGATTTAATTACTGAGAAACAGGCCTCTTTATTTCCCTCACAAGGTCATTACCGTGAAATTTCAGATCACTTGAAGTCAATTGTAGAGAAATGTGGAACTGTTTTGGTTTGAGTACAGTCTAATCTTTTTTCAGCAAATTATTTTTGATGTCTTTTTTAGTGGATCATGAGAGTTTCATCGGATGCTGCTTTTATTTTGGCCCTTTAATGTTCTCTTGAAATTTTTTGGTTCTAGTCACTCACCCAAGATTTAAGGACTACTTGGAAGGCATATTTTTCAACAATCCTCAACTTGAAGCTGCATGGATGTTTTCTCTCCCTTGGTGTTTCCCTCCCATCCATTTTGAAGTTTCTAGTCTGCAATCTTCAGTTGTTTTCGGGCTTCTTGTTGAAAGATTTTAATTTTGCTTTGTTCTTATTTTTCTACTGTTTTGCTCAAGTTTCGTGTTCAATTCATTTGTACTTTTGTTTGCAATCACTTTTTTAGTATACTTCTTTTGTACTTTGAGCATTATTCTCTTTTATTTAATAAATAAAAGAGGCTCGTATCTGTTTAAAAAAATGGTTGGTTTTGTTTCCATTTCAAAGAAAAAAAAAGGTAAATAGAACACCTTATTTAAACAGGATCTATTCTGTAGCTTGTACAACTGCATCCTTGAGTTCTAAATATTAGGTAAATGGTGTATTCCTATATGCTTGTTTTTTTAAAAGAAAATTTCCTTATGAACCATTGTTTCACTTTCTATGACGGGTCCTAACAGGCTGCCTGTTCCTCTTCTTGTATGTTTGAAGAGGTCCATTAAGTAATTCTCACCATCAGGCTTATCTTCAAATTCTTTTTCAGTCGTTCTTATTGAAAATACTTTGTAATTGACGAGCTCTCTTAGTGATTTCATTAAGGGGCCTTTGCATATCAATCTCAGACATCATTTCAACAAAACATACTGTGACTCAAATTTATTTTATGAGATGGGGATTAATGATGTACTACATTTTTTCAGGGTGGAAGTTACATTTTTGAGTTTAAAAATTTCTCAGATCTTCATGTTTGTCGCGAGCTTGTAGGTAAGCCAGGACTCAAATTTAAGCAATCTTTGTTTATTGAACTGTAATGGAATTTACGACCTTTGTGATTTTAATTATATAAGAACTTTAGGTTCCTTGATCTGAAAGGTGGTGAATAGTTGTGAACTTTCCCAATGGATTGATAAGCCCCTTGTTTAGTTTAACTGTTCCTTAGGCAATTAGGACAAAGGGATGAAAGGCGAATGCCACGATCAGTTAACTTTATAAGGGCACCTCAGACACACTACTTAGTAACAAGTTAGAGGGGAAAGGCAAGGAAGTTGGGTGGTTCAATAATATGTTAAGATTAGGGGATGGCCAGTAGCGAATCATTCTGTAGTTTTGTTCCATTAACTTGGGTATGCAAGAGTATAGGAAAAGTCTCAAATCTCTTCCTAGGAATTTGTTCCATCTAATTGCTATCTGAGGAACATCTATAATCCATTCTGTTCTCCATAGCAATCATTCAAATAATTTTTGTAATATTTCTCTACTTTTTATCCGACATTGTACTTATACCCTTTTCCCCTATTTGTTGGATTTTCTAGCCTGATGGTTTGGCATCTGGTGCCTTCTCCAGGAAGTGCTTTAGCAAAGTTGGGAGAGGCTGCACAAGCTCCCTCTGAGAGACCTGTGGCAGCATTTCCTCATGAACAGCTCAGTAAATTAGAAATGGAACTTCGAATGAGATGTTTGCAAGAAGATAGGTAAACTGATGACCCATATCGTTGTTAACAAGAAGTCAACCTTTATCGCTTTATGTGTAACAAGTCACGTAACATCTCACGGCTCATCATTTATTCTGAGTCTGCAGTGAACTACAGAAACTCCATAAACAATTTGTGATTGGTGGTGTGTTGACCGAATCTGAATTCTGGGCAGCAAGGAAGGTGCGGGGAGAATCTTTATCTTTTCTGCATTTGAAGCTGACTTTTTTCGAACTCTGATTGTATATTTAATGTGAGGAGTTCACAAAGTATATTCTGAAGAAAATATGACATTTTCTGCAACTAATTGATACAGAAATTACTGGAACGAGACAACTCCAAAAAGTCAAAACAGCTGATTGGTTTTAAGAGTTCAATGGTTTTGGATACCAAACCAATGTCTGATGGTCGGGTACAGCATCATTACCTTTTTCCAACCACATCAAATCTAGTTTTTTTATCATTAATATCTTATTTGTCAAATCCTTCTTCCTGCTTGGTTTTGGGGCTATTTTCAAATACAGCAAAATAGACCAAAATATTACAAAAATAGCAAAATATTGCAGTTTATCTACGAAGGACTGCAATAGACTATCTGTGTTCATATGTATCATGATGGACAGAGATCGTGGTTTGTTATAGATAGATTGTGATATTTTGCTATATTTGTAAATGCTTTTAGAAGTTGTCATTTAAAATAATTTCTCTTGGTTTTGACGTTATTATTTTCTTTTCTACTTTCAGACAAACAAGGTTACATTTAATTTGACACCGGAGATCAAATATCAGGCATGA

mRNA sequence

ATGTCGACCGCCGCATGTCTGCCATCGTCCTCTAAGCCCCGCCCAGTCGTGACTGCCGTGCCCACGTCCGAAAACAGTTCGAATGTCCTTAGCACTCTGTCCAGCAAGATTAAGGACGTTGGACGGGCATTCGTGTCAGTTTGGAACCCATTCAAACACGAACCAACAGTTAATTATGCTTTTTTGGCATTAATCAGCGGGTTCATTCGAAGAGGTTTGATTGAGCAGACTGATCTTTATAGGATTGCTAATCAGATTCAAGTCTCTGAGGGGAGGATGGGAACCAAGTATGTCCATAAGAGTGCTAAGTACAAGACCTCAGTTAAGGATCCTGGCACACCCGGCGTTTTGGAAATGACAGAGTGCAAGTTTGTATTTAGACCCAGCGATCCCACTTCAGCTTCTAAGCTTGACGTGGAGTTTAGATTTATTAAAGGCCATAAAAACACTAAGGAAGGATCAAATAAACCACCGTGGCTTAATCTCACCAAGGACCAGGGTGGAAGTTACATTTTTGAGTTTAAAAATTTCTCAGATCTTCATGTTTGTCGCGAGCTTGTAGGAAGTGCTTTAGCAAAGTTGGGAGAGGCTGCACAAGCTCCCTCTGAGAGACCTGTGGCAGCATTTCCTCATGAACAGCTCAGTAAATTAGAAATGGAACTTCGAATGAGATGTTTGCAAGAAGATAGTGAACTACAGAAACTCCATAAACAATTTGTGATTGGTGGTGTGTTGACCGAATCTGAATTCTGGGCAGCAAGGAAGAAATTACTGGAACGAGACAACTCCAAAAAGTCAAAACAGCTGATTGGTTTTAAGAGTTCAATGGTTTTGGATACCAAACCAATGTCTGATGGTCGGACAAACAAGGTTACATTTAATTTGACACCGGAGATCAAATATCAGGCATGA

Coding sequence (CDS)

ATGTCGACCGCCGCATGTCTGCCATCGTCCTCTAAGCCCCGCCCAGTCGTGACTGCCGTGCCCACGTCCGAAAACAGTTCGAATGTCCTTAGCACTCTGTCCAGCAAGATTAAGGACGTTGGACGGGCATTCGTGTCAGTTTGGAACCCATTCAAACACGAACCAACAGTTAATTATGCTTTTTTGGCATTAATCAGCGGGTTCATTCGAAGAGGTTTGATTGAGCAGACTGATCTTTATAGGATTGCTAATCAGATTCAAGTCTCTGAGGGGAGGATGGGAACCAAGTATGTCCATAAGAGTGCTAAGTACAAGACCTCAGTTAAGGATCCTGGCACACCCGGCGTTTTGGAAATGACAGAGTGCAAGTTTGTATTTAGACCCAGCGATCCCACTTCAGCTTCTAAGCTTGACGTGGAGTTTAGATTTATTAAAGGCCATAAAAACACTAAGGAAGGATCAAATAAACCACCGTGGCTTAATCTCACCAAGGACCAGGGTGGAAGTTACATTTTTGAGTTTAAAAATTTCTCAGATCTTCATGTTTGTCGCGAGCTTGTAGGAAGTGCTTTAGCAAAGTTGGGAGAGGCTGCACAAGCTCCCTCTGAGAGACCTGTGGCAGCATTTCCTCATGAACAGCTCAGTAAATTAGAAATGGAACTTCGAATGAGATGTTTGCAAGAAGATAGTGAACTACAGAAACTCCATAAACAATTTGTGATTGGTGGTGTGTTGACCGAATCTGAATTCTGGGCAGCAAGGAAGAAATTACTGGAACGAGACAACTCCAAAAAGTCAAAACAGCTGATTGGTTTTAAGAGTTCAATGGTTTTGGATACCAAACCAATGTCTGATGGTCGGACAAACAAGGTTACATTTAATTTGACACCGGAGATCAAATATCAGGCATGA

Protein sequence

MSTAACLPSSSKPRPVVTAVPTSENSSNVLSTLSSKIKDVGRAFVSVWNPFKHEPTVNYAFLALISGFIRRGLIEQTDLYRIANQIQVSEGRMGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKEGSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSERPVAAFPHEQLSKLEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDNSKKSKQLIGFKSSMVLDTKPMSDGRTNKVTFNLTPEIKYQA*
Homology
[Close]
BLAST of CSPI04G16990 vs. ExPASy Swiss-Prot
Match: Q3ECP0 (General transcription and DNA repair factor IIH subunit TFB1-1 OS=Arabidopsis thaliana OX=3702 GN=TFB1-1 PE=2 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 2.7e-57
Identity = 116/205 (56.59%), Postives = 144/205 (70.24%), Query Frame = 0 

Query: 98  VHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKEGSNKP 157
           + K  KYK++VKDPGTPG L + E   +F P+DP S SKL V  + IK  K TKEGSNKP
Sbjct: 6   IEKLVKYKSTVKDPGTPGFLRIREGMLLFVPNDPKSDSKLKVLTQNIKSQKYTKEGSNKP 65

Query: 158 PWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSERPVAAFPHEQLSKL 217
           PWLNLT  Q  S+IFEF+N+ D+H CR+ +  ALAK     +    + V +   EQLS  
Sbjct: 66  PWLNLTNKQAKSHIFEFENYPDMHACRDFITKALAK----CELEPNKSVVSTSSEQLSIK 125

Query: 218 EMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDNSKKSKQLIGFKSSMV 277
           E+ELR + L+E+SELQ+LHKQFV   VLTE EFWA RKKLL +D+ +KSKQ +G KS MV
Sbjct: 126 ELELRFKLLRENSELQRLHKQFVESKVLTEDEFWATRKKLLGKDSIRKSKQQLGLKSMMV 185

Query: 278 LDTKPMSDGRTNKVTFNLTPEIKYQ 303
              KP +DGRTN+VTFNLTPEI +Q
Sbjct: 186 SGIKPSTDGRTNRVTFNLTPEIIFQ 206

[Close]
BLAST of CSPI04G16990 vs. ExPASy Swiss-Prot
Match: Q9M322 (General transcription and DNA repair factor IIH subunit TFB1-3 OS=Arabidopsis thaliana OX=3702 GN=TFB1-3 PE=2 SV=2)

HSP 1 Score: 222.2 bits (565), Expect = 7.8e-57
Identity = 117/205 (57.07%), Postives = 142/205 (69.27%), Query Frame = 0 

Query: 98  VHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKEGSNKP 157
           + K  KYK+ VKDPGT G LE++E   +F P+DP S  KL V+   IK  K TKEGSNKP
Sbjct: 1   MEKRVKYKSFVKDPGTLGSLELSEVMLLFVPNDPKSDLKLKVQTHNIKSQKYTKEGSNKP 60

Query: 158 PWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSERPVAAFPHEQLSKL 217
           PWLNLT  QG S+IFEF+N+ D+H CR+ +  ALAK  E       + V   P EQLS  
Sbjct: 61  PWLNLTSKQGRSHIFEFENYPDMHACRDFITKALAKCEE----EPNKLVVLTPAEQLSMA 120

Query: 218 EMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDNSKKSKQLIGFKSSMV 277
           E ELR + L+E+SELQKLHKQFV   VLTE EFW+ RKKLL +D+ +KSKQ +G KS MV
Sbjct: 121 EFELRFKLLRENSELQKLHKQFVESKVLTEDEFWSTRKKLLGKDSIRKSKQQMGLKSMMV 180

Query: 278 LDTKPMSDGRTNKVTFNLTPEIKYQ 303
              KP +DGRTN+VTFNLT EI +Q
Sbjct: 181 SGIKPSTDGRTNRVTFNLTSEIIFQ 201

[Close]
BLAST of CSPI04G16990 vs. ExPASy Swiss-Prot
Match: Q55FP1 (General transcription factor IIH subunit 1 OS=Dictyostelium discoideum OX=44689 GN=gtf2h1 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.5e-07
Identity = 31/90 (34.44%), Postives = 58/90 (64.44%), Query Frame = 0 

Query: 214 LSKLEMELRMRCLQEDSELQKLHKQFV-IGGVLTESEFWAARKKLLERDNSKKSKQLIGF 273
           LS+ +++ R+  LQ + EL++L++Q V    V++ES+FW +RK +L+ D+++  KQ  G 
Sbjct: 182 LSEQQIKQRVILLQSNKELRELYEQMVNKDRVISESDFWESRKSMLKNDSTRSEKQHTGM 241

Query: 274 KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQ 303
            S+++ D +P S+   N V +  TP + +Q
Sbjct: 242 PSNLLADVRPSSE-TPNAVHYRFTPTVIHQ 270

[Close]
BLAST of CSPI04G16990 vs. ExPASy Swiss-Prot
Match: Q9DBA9 (General transcription factor IIH subunit 1 OS=Mus musculus OX=10090 GN=Gtf2h1 PE=1 SV=2)

HSP 1 Score: 57.8 bits (138), Expect = 2.5e-07
Identity = 49/157 (31.21%), Postives = 74/157 (47.13%), Query Frame = 0 

Query: 144 IKGHKNTKEGSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSE 203
           IK  K + EG  K   L L    G +  F F N S     R+ V   L +L    +  + 
Sbjct: 50  IKCQKISPEGKAKIQ-LQLVLHAGDTTNFHFSNESTAVKERDAVKDLLQQLLPKFKRKAN 109

Query: 204 RPVAAFPHEQLSKLEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDNS 263
           +             E+E + R LQED  L +L+K  V+  V++  EFWA R  +   D+S
Sbjct: 110 K-------------ELEEKNRMLQEDPVLFQLYKDLVVSQVISAEEFWANRLNVNATDSS 169

Query: 264 KKS-KQLIGFKSSMVLDTKPMSDGRTNKVTFNLTPEI 300
             S KQ +G  ++ + D +P +DG  N + +NLT +I
Sbjct: 170 TSSHKQDVGISAAFLADVRPQTDG-CNGLRYNLTSDI 191

[Close]
BLAST of CSPI04G16990 vs. ExPASy Swiss-Prot
Match: P32780 (General transcription factor IIH subunit 1 OS=Homo sapiens OX=9606 GN=GTF2H1 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.3e-07
Identity = 49/158 (31.01%), Postives = 74/158 (46.84%), Query Frame = 0 

Query: 144 IKGHKNTKEGSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSE 203
           IK  K + EG  K   L L    G +  F F N S     R+ V   L +L    +  + 
Sbjct: 50  IKCQKISPEGKAKIQ-LQLVLHAGDTTNFHFSNESTAVKERDAVKDLLQQLLPKFKRKAN 109

Query: 204 RPVAAFPHEQLSKLEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDNS 263
           +             E+E + R LQED  L +L+K  V+  V++  EFWA R  +   D+S
Sbjct: 110 K-------------ELEEKNRMLQEDPVLFQLYKDLVVSQVISAEEFWANRLNVNATDSS 169

Query: 264 KKS--KQLIGFKSSMVLDTKPMSDGRTNKVTFNLTPEI 300
             S  KQ +G  ++ + D +P +DG  N + +NLT +I
Sbjct: 170 STSNHKQDVGISAAFLADVRPQTDG-CNGLRYNLTSDI 192

[Close]
BLAST of CSPI04G16990 vs. ExPASy TrEMBL
Match: A0A0A0KYD2 (PH_TFIIH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G338430 PE=4 SV=1)

HSP 1 Score: 599.4 bits (1544), Expect = 8.6e-168
Identity = 302/303 (99.67%), Postives = 303/303 (100.00%), Query Frame = 0 

Query: 1   MSTAACLPSSSKPRPVVTAVPTSENSSNVLSTLSSKIKDVGRAFVSVWNPFKHEPTVNYA 60
           MSTAACLPSSSKPRPVVTAVPTSENSSNVLSTLSSKIKDVGRAFVSVWNPFKHEPTVNYA
Sbjct: 1   MSTAACLPSSSKPRPVVTAVPTSENSSNVLSTLSSKIKDVGRAFVSVWNPFKHEPTVNYA 60

Query: 61  FLALISGFIRRGLIEQTDLYRIANQIQVSEGRMGTKYVHKSAKYKTSVKDPGTPGVLEMT 120
           FLALISGFIRRGLIEQTDLYRIANQIQVSEGRMGTKYVHKSAKYKTSVKDPGTPGVLEMT
Sbjct: 61  FLALISGFIRRGLIEQTDLYRIANQIQVSEGRMGTKYVHKSAKYKTSVKDPGTPGVLEMT 120

Query: 121 ECKFVFRPSDPTSASKLDVEFRFIKGHKNTKEGSNKPPWLNLTKDQGGSYIFEFKNFSDL 180
           ECKFVFRPSDPTSASKLDVEFRFIKGHKNTKEGSNKPPWLNLTKDQGGSYIFEFKNFSDL
Sbjct: 121 ECKFVFRPSDPTSASKLDVEFRFIKGHKNTKEGSNKPPWLNLTKDQGGSYIFEFKNFSDL 180

Query: 181 HVCRELVGSALAKLGEAAQAPSERPVAAFPHEQLSKLEMELRMRCLQEDSELQKLHKQFV 240
           HVCRELVGSALAKLGEAAQAPSERPVAAFPHEQLSKLEMELRMRCLQEDSELQKLHKQFV
Sbjct: 181 HVCRELVGSALAKLGEAAQAPSERPVAAFPHEQLSKLEMELRMRCLQEDSELQKLHKQFV 240

Query: 241 IGGVLTESEFWAARKKLLERDNSKKSKQLIGFKSSMVLDTKPMSDGRTNKVTFNLTPEIK 300
           IGGVLTESEFWAARKKLLE+DNSKKSKQLIGFKSSMVLDTKPMSDGRTNKVTFNLTPEIK
Sbjct: 241 IGGVLTESEFWAARKKLLEQDNSKKSKQLIGFKSSMVLDTKPMSDGRTNKVTFNLTPEIK 300

Query: 301 YQA 304
           YQA
Sbjct: 301 YQA 303

[Close]
BLAST of CSPI04G16990 vs. ExPASy TrEMBL
Match: A0A1S3C6E8 (probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497008 PE=4 SV=1)

HSP 1 Score: 418.3 bits (1074), Expect = 2.7e-113
Identity = 207/210 (98.57%), Postives = 208/210 (99.05%), Query Frame = 0 

Query: 93  MGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKE 152
           MGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKE
Sbjct: 1   MGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKE 60

Query: 153 GSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSERPVAAFPHE 212
           GSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRE VGSALAKLGEAAQAPSERPVAAFPHE
Sbjct: 61  GSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCREFVGSALAKLGEAAQAPSERPVAAFPHE 120

Query: 213 QLSKLEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDNSKKSKQLIGF 272
           QLSK EMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERD+SKKSKQLIGF
Sbjct: 121 QLSKSEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDSSKKSKQLIGF 180

Query: 273 KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQ 303
           KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQ
Sbjct: 181 KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQ 210

[Close]
BLAST of CSPI04G16990 vs. ExPASy TrEMBL
Match: A0A6J1DNY2 (probable RNA polymerase II transcription factor B subunit 1-1 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022945 PE=3 SV=1)

HSP 1 Score: 395.6 bits (1015), Expect = 1.9e-106
Identity = 195/210 (92.86%), Postives = 202/210 (96.19%), Query Frame = 0 

Query: 93  MGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKE 152
           MGTKYV KSAKYKTSVKDPGTPGVLEMTE KFVF+PSDPTSASKLDVEFR+IKGHKNTKE
Sbjct: 1   MGTKYVQKSAKYKTSVKDPGTPGVLEMTERKFVFKPSDPTSASKLDVEFRYIKGHKNTKE 60

Query: 153 GSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSERPVAAFPHE 212
           GSNKPPWLNLT+DQGGSYIFEFKNFSDLHVCRE VGSALAK GE AQA SER VA FPHE
Sbjct: 61  GSNKPPWLNLTRDQGGSYIFEFKNFSDLHVCREFVGSALAKSGETAQASSERHVATFPHE 120

Query: 213 QLSKLEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDNSKKSKQLIGF 272
           QLSKLEMELRM+CLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDNSKKSKQL+GF
Sbjct: 121 QLSKLEMELRMKCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDNSKKSKQLVGF 180

Query: 273 KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQ 303
           K+SMVLDTKPMSDGRTNKVTFNLTPEIKY+
Sbjct: 181 KNSMVLDTKPMSDGRTNKVTFNLTPEIKYE 210

[Close]
BLAST of CSPI04G16990 vs. ExPASy TrEMBL
Match: A0A6J1DRT9 (probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022945 PE=3 SV=1)

HSP 1 Score: 395.6 bits (1015), Expect = 1.9e-106
Identity = 195/210 (92.86%), Postives = 202/210 (96.19%), Query Frame = 0 

Query: 93  MGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKE 152
           MGTKYV KSAKYKTSVKDPGTPGVLEMTE KFVF+PSDPTSASKLDVEFR+IKGHKNTKE
Sbjct: 1   MGTKYVQKSAKYKTSVKDPGTPGVLEMTERKFVFKPSDPTSASKLDVEFRYIKGHKNTKE 60

Query: 153 GSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSERPVAAFPHE 212
           GSNKPPWLNLT+DQGGSYIFEFKNFSDLHVCRE VGSALAK GE AQA SER VA FPHE
Sbjct: 61  GSNKPPWLNLTRDQGGSYIFEFKNFSDLHVCREFVGSALAKSGETAQASSERHVATFPHE 120

Query: 213 QLSKLEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDNSKKSKQLIGF 272
           QLSKLEMELRM+CLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDNSKKSKQL+GF
Sbjct: 121 QLSKLEMELRMKCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDNSKKSKQLVGF 180

Query: 273 KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQ 303
           K+SMVLDTKPMSDGRTNKVTFNLTPEIKY+
Sbjct: 181 KNSMVLDTKPMSDGRTNKVTFNLTPEIKYE 210

[Close]
BLAST of CSPI04G16990 vs. ExPASy TrEMBL
Match: A0A6J1IB04 (probable RNA polymerase II transcription factor B subunit 1-1 OS=Cucurbita maxima OX=3661 GN=LOC111470852 PE=3 SV=1)

HSP 1 Score: 394.8 bits (1013), Expect = 3.2e-106
Identity = 197/210 (93.81%), Postives = 200/210 (95.24%), Query Frame = 0 

Query: 93  MGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKE 152
           MGTKYV KSAKYKTSVKDPGTPGVLEMTE KFVFRPSDPTSASKLDVEFRFIKGHKNTKE
Sbjct: 1   MGTKYVQKSAKYKTSVKDPGTPGVLEMTERKFVFRPSDPTSASKLDVEFRFIKGHKNTKE 60

Query: 153 GSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSERPVAAFPHE 212
           GSNKPPWLNLT+DQGGSYIFEFKNFSDLHVCRE VGSALAK GEA QAPSE+ VA FPHE
Sbjct: 61  GSNKPPWLNLTRDQGGSYIFEFKNFSDLHVCREFVGSALAKSGEAPQAPSEKLVATFPHE 120

Query: 213 QLSKLEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDNSKKSKQLIGF 272
           QLSK EMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERD S KSKQL+GF
Sbjct: 121 QLSKSEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDYSTKSKQLVGF 180

Query: 273 KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQ 303
           KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQ
Sbjct: 181 KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQ 210

[Close]
BLAST of CSPI04G16990 vs. NCBI nr
Match: KGN54745.2 (hypothetical protein Csa_012761 [Cucumis sativus])

HSP 1 Score: 577.8 bits (1488), Expect = 5.5e-161
Identity = 301/343 (87.76%), Postives = 302/343 (88.05%), Query Frame = 0 

Query: 1   MSTAACLPSSSKPRPVVTAVPTSEN----------------------------------- 60
           MSTAACLPSSSKPRPVVTAVPTSEN                                   
Sbjct: 1   MSTAACLPSSSKPRPVVTAVPTSENVSATSSLGNNGLFVFLLFVLITQDLCGFYLGFSLC 60

Query: 61  ------SSNVLSTLSSKIKDVGRAFVSVWNPFKHEPTVNYAFLALISGFIRRGLIEQTDL 120
                 SSNVLSTLSSKIKDVGRAFVSVWNPFKHEPTVNYAFLALISGFIRRGLIEQTDL
Sbjct: 61  FCFGIKSSNVLSTLSSKIKDVGRAFVSVWNPFKHEPTVNYAFLALISGFIRRGLIEQTDL 120

Query: 121 YRIANQIQVSEGRMGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDV 180
           YRIANQIQVSEGRMGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDV
Sbjct: 121 YRIANQIQVSEGRMGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDV 180

Query: 181 EFRFIKGHKNTKEGSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQ 240
           EFRFIKGHKNTKEGSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQ
Sbjct: 181 EFRFIKGHKNTKEGSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQ 240

Query: 241 APSERPVAAFPHEQLSKLEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLE 300
           APSERPVAAFPHEQLSKLEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLE
Sbjct: 241 APSERPVAAFPHEQLSKLEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLE 300

Query: 301 RDNSKKSKQLIGFKSSMVLDTKPMSDGRTNKVTFNLTPEIKYQ 303
           +DNSKKSKQLIGFKSSMVLDTKPMSDGRTNKVTFNLTPEIKYQ
Sbjct: 301 QDNSKKSKQLIGFKSSMVLDTKPMSDGRTNKVTFNLTPEIKYQ 343

[Close]
BLAST of CSPI04G16990 vs. NCBI nr
Match: XP_011653743.1 (general transcription and DNA repair factor IIH subunit TFB1-1 isoform X2 [Cucumis sativus])

HSP 1 Score: 422.5 bits (1085), Expect = 3.0e-114
Identity = 209/210 (99.52%), Postives = 210/210 (100.00%), Query Frame = 0 

Query: 93  MGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKE 152
           MGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKE
Sbjct: 1   MGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKE 60

Query: 153 GSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSERPVAAFPHE 212
           GSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSERPVAAFPHE
Sbjct: 61  GSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSERPVAAFPHE 120

Query: 213 QLSKLEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDNSKKSKQLIGF 272
           QLSKLEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLE+DNSKKSKQLIGF
Sbjct: 121 QLSKLEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLEQDNSKKSKQLIGF 180

Query: 273 KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQ 303
           KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQ
Sbjct: 181 KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQ 210

[Close]
BLAST of CSPI04G16990 vs. NCBI nr
Match: XP_031739948.1 (general transcription and DNA repair factor IIH subunit TFB1-1 isoform X1 [Cucumis sativus] >XP_031739949.1 general transcription and DNA repair factor IIH subunit TFB1-1 isoform X1 [Cucumis sativus] >XP_031739950.1 general transcription and DNA repair factor IIH subunit TFB1-1 isoform X1 [Cucumis sativus] >XP_031739951.1 general transcription and DNA repair factor IIH subunit TFB1-1 isoform X1 [Cucumis sativus])

HSP 1 Score: 422.5 bits (1085), Expect = 3.0e-114
Identity = 209/210 (99.52%), Postives = 210/210 (100.00%), Query Frame = 0 

Query: 93  MGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKE 152
           MGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKE
Sbjct: 1   MGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKE 60

Query: 153 GSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSERPVAAFPHE 212
           GSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSERPVAAFPHE
Sbjct: 61  GSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSERPVAAFPHE 120

Query: 213 QLSKLEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDNSKKSKQLIGF 272
           QLSKLEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLE+DNSKKSKQLIGF
Sbjct: 121 QLSKLEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLEQDNSKKSKQLIGF 180

Query: 273 KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQ 303
           KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQ
Sbjct: 181 KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQ 210

[Close]
BLAST of CSPI04G16990 vs. NCBI nr
Match: XP_008457278.1 (PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 [Cucumis melo])

HSP 1 Score: 418.3 bits (1074), Expect = 5.6e-113
Identity = 207/210 (98.57%), Postives = 208/210 (99.05%), Query Frame = 0 

Query: 93  MGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKE 152
           MGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKE
Sbjct: 1   MGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKE 60

Query: 153 GSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSERPVAAFPHE 212
           GSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRE VGSALAKLGEAAQAPSERPVAAFPHE
Sbjct: 61  GSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCREFVGSALAKLGEAAQAPSERPVAAFPHE 120

Query: 213 QLSKLEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDNSKKSKQLIGF 272
           QLSK EMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERD+SKKSKQLIGF
Sbjct: 121 QLSKSEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDSSKKSKQLIGF 180

Query: 273 KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQ 303
           KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQ
Sbjct: 181 KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQ 210

[Close]
BLAST of CSPI04G16990 vs. NCBI nr
Match: XP_038894194.1 (general transcription and DNA repair factor IIH subunit TFB1-1-like isoform X2 [Benincasa hispida])

HSP 1 Score: 406.8 bits (1044), Expect = 1.7e-109
Identity = 201/210 (95.71%), Postives = 204/210 (97.14%), Query Frame = 0 

Query: 93  MGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKE 152
           MGTKYVHKSAKYKTS+KDPGTPGVLEMTE KF+FRPSDPTSASKLDVEFRFIKGHKNTKE
Sbjct: 1   MGTKYVHKSAKYKTSIKDPGTPGVLEMTEWKFIFRPSDPTSASKLDVEFRFIKGHKNTKE 60

Query: 153 GSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSERPVAAFPHE 212
           GSNKPPWLNLT+DQGGS IFEFKNFSDLHVCRE VGSALAK GEAAQAP ERPVAAFPHE
Sbjct: 61  GSNKPPWLNLTRDQGGSIIFEFKNFSDLHVCREFVGSALAKSGEAAQAPPERPVAAFPHE 120

Query: 213 QLSKLEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDNSKKSKQLIGF 272
           QLSK EMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDNSKKSKQLIGF
Sbjct: 121 QLSKSEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDNSKKSKQLIGF 180

Query: 273 KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQ 303
           KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQ
Sbjct: 181 KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQ 210

[Close]
BLAST of CSPI04G16990 vs. TAIR 10
Match: AT1G55750.1 (BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) )

HSP 1 Score: 223.8 bits (569), Expect = 1.9e-58
Identity = 116/205 (56.59%), Postives = 144/205 (70.24%), Query Frame = 0 

Query: 98  VHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKEGSNKP 157
           + K  KYK++VKDPGTPG L + E   +F P+DP S SKL V  + IK  K TKEGSNKP
Sbjct: 6   IEKLVKYKSTVKDPGTPGFLRIREGMLLFVPNDPKSDSKLKVLTQNIKSQKYTKEGSNKP 65

Query: 158 PWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSERPVAAFPHEQLSKL 217
           PWLNLT  Q  S+IFEF+N+ D+H CR+ +  ALAK     +    + V +   EQLS  
Sbjct: 66  PWLNLTNKQAKSHIFEFENYPDMHACRDFITKALAK----CELEPNKSVVSTSSEQLSIK 125

Query: 218 EMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDNSKKSKQLIGFKSSMV 277
           E+ELR + L+E+SELQ+LHKQFV   VLTE EFWA RKKLL +D+ +KSKQ +G KS MV
Sbjct: 126 ELELRFKLLRENSELQRLHKQFVESKVLTEDEFWATRKKLLGKDSIRKSKQQLGLKSMMV 185

Query: 278 LDTKPMSDGRTNKVTFNLTPEIKYQ 303
              KP +DGRTN+VTFNLTPEI +Q
Sbjct: 186 SGIKPSTDGRTNRVTFNLTPEIIFQ 206

[Close]
BLAST of CSPI04G16990 vs. TAIR 10
Match: AT3G61420.1 (BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) )

HSP 1 Score: 222.2 bits (565), Expect = 5.5e-58
Identity = 117/205 (57.07%), Postives = 142/205 (69.27%), Query Frame = 0 

Query: 98  VHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKEGSNKP 157
           + K  KYK+ VKDPGT G LE++E   +F P+DP S  KL V+   IK  K TKEGSNKP
Sbjct: 1   MEKRVKYKSFVKDPGTLGSLELSEVMLLFVPNDPKSDLKLKVQTHNIKSQKYTKEGSNKP 60

Query: 158 PWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSERPVAAFPHEQLSKL 217
           PWLNLT  QG S+IFEF+N+ D+H CR+ +  ALAK  E       + V   P EQLS  
Sbjct: 61  PWLNLTSKQGRSHIFEFENYPDMHACRDFITKALAKCEE----EPNKLVVLTPAEQLSMA 120

Query: 218 EMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDNSKKSKQLIGFKSSMV 277
           E ELR + L+E+SELQKLHKQFV   VLTE EFW+ RKKLL +D+ +KSKQ +G KS MV
Sbjct: 121 EFELRFKLLRENSELQKLHKQFVESKVLTEDEFWSTRKKLLGKDSIRKSKQQMGLKSMMV 180

Query: 278 LDTKPMSDGRTNKVTFNLTPEIKYQ 303
              KP +DGRTN+VTFNLT EI +Q
Sbjct: 181 SGIKPSTDGRTNRVTFNLTSEIIFQ 201

The following BLAST results are available for this feature:
BLAST of CSPI04G16990 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q3ECP02.7e-5756.59General transcription and DNA repair factor IIH subunit TFB1-1 OS=Arabidopsis th... [more]
Q9M3227.8e-5757.07General transcription and DNA repair factor IIH subunit TFB1-3 OS=Arabidopsis th... [more]
Q55FP11.5e-0734.44General transcription factor IIH subunit 1 OS=Dictyostelium discoideum OX=44689 ... [more]
Q9DBA92.5e-0731.21General transcription factor IIH subunit 1 OS=Mus musculus OX=10090 GN=Gtf2h1 PE... [more]
P327803.3e-0731.01General transcription factor IIH subunit 1 OS=Homo sapiens OX=9606 GN=GTF2H1 PE=... [more]
BLAST of CSPI04G16990 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KYD28.6e-16899.67PH_TFIIH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G338430 PE... [more]
A0A1S3C6E82.7e-11398.57probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 OS=Cucu... [more]
A0A6J1DNY21.9e-10692.86probable RNA polymerase II transcription factor B subunit 1-1 isoform X2 OS=Momo... [more]
A0A6J1DRT91.9e-10692.86probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 OS=Momo... [more]
A0A6J1IB043.2e-10693.81probable RNA polymerase II transcription factor B subunit 1-1 OS=Cucurbita maxim... [more]
BLAST of CSPI04G16990 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54745.25.5e-16187.76hypothetical protein Csa_012761 [Cucumis sativus][more]
XP_011653743.13.0e-11499.52general transcription and DNA repair factor IIH subunit TFB1-1 isoform X2 [Cucum... [more]
XP_031739948.13.0e-11499.52general transcription and DNA repair factor IIH subunit TFB1-1 isoform X1 [Cucum... [more]
XP_008457278.15.6e-11398.57PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform... [more]
XP_038894194.11.7e-10995.71general transcription and DNA repair factor IIH subunit TFB1-1-like isoform X2 [... [more]
BLAST of CSPI04G16990 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G55750.11.9e-5856.59BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS... [more]
AT3G61420.15.5e-5857.07BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D6.10.140.1200coord: 216..256
e-value: 7.0E-13
score: 50.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availableSUPERFAMILY50729PH domain-likecoord: 101..193
IPR013876TFIIH p62 subunit, N-terminalPFAMPF08567PH_TFIIHcoord: 113..179
e-value: 4.0E-6
score: 27.1
IPR027079TFIIH subunit Tfb1/GTF2H1PANTHERPTHR12856TRANSCRIPTION INITIATION FACTOR IIH-RELATEDcoord: 98..302
IPR035925BSD domain superfamilySUPERFAMILY140383BSD domain-likecoord: 212..258

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G16990.1CSPI04G16990.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006289 nucleotide-excision repair
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0000439 transcription factor TFIIH core complex