CSPI04G16960 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G16960
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Beta-galactosidase
Location	Chr4: 14372388 .. 14373308 (+)
RNA-Seq Expression	CSPI04G16960
Synteny	CSPI04G16960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGTGTACCTCGGTCTTTTACTCTCATTAGTATTGATGATAAGAATTCTTGGATCCTGGACTCTGGTGCCACAAATCATTTAACTGGTTCCTCTTAAGACTTTGTGTCCTACATTCTGTGTGCTGGAAATGAGAAGATAGAATTGTTGATAGCTCCTTGGCTCCCATTGTCGGGAAAGGGCTGATTTCCCTTTTTGACGGGTTCTCATTATAAAATTTGTTGCATGTGCCACAAATTTCATATAATTTTATGTCGATTAGCAAGATTACTCAAGAATTAAACTGCAAAGCAACATTCTTACCTGGTTCTGTTTCTTTTCAAGACCTGAGCTCGAGGAGGATGATTAACACTGCCTGGCACAATAGGGATCTTTACTTGCTTGATGATGATGCCTCCTCTAGTAACATTTCTAGAACTAGTCTTTTACCTTCCTACTTTACCACTTCTGAAAAAGATCCTATGTTGTGGCATTTCTGTTTAGGCCATCCCAACTTTAAATATATGAGATACCTATTTCCTCATCTCTTTTCTAAAGTTGATATTTCTTCCTTAACTTGTGATGTGTGCAAAAAAGCTAAACAACACCGAGTCTCGTTTTCCTCGCAACCCTATAAGCCAACCCGACCTTTTACTCTTGTCCATAGTGATATTTGGTGACCATCCAAGGTCACTACCTCCTCCGAAAAACGATGATTTGACCTTTATTGATGACTATACTTGTCTTACTTGGGTTTTCTTGATCTCCGACAAATCTGAAGTTACCACTACATTCTGGGACTTCTATCACACCATAGAAATGAAATTCAATACAAAGATTGCAATCCTATGAGTGATAATGGACGTGAGTTTCAAAACCACTCTTAACGAATTCTTATCCACTAAAGGAATTGTTCACAAAAATTCTTGTGCTTACAATCTCCA

mRNA sequence

AAGTGTACCTCGGTCTTTTACTCTCATTAGTATTGATGATAAGAATTCTTGGATCCTGGACTCTGGTGCCACAAATCATTTAACTGGTTCCTCTTAAGACTTTGTGTCCTACATTCTGTGTGCTGGAAATGAGAAGATAGAATTGTTGATAGCTCCTTGGCTCCCATTGTCGGGAAAGGGCTGATTTCCCTTTTTGACGGGTTCTCATTATAAAATTTGTTGCATGTGCCACAAATTTCATATAATTTTATGTCGATTAGCAAGATTACTCAAGAATTAAACTGCAAAGCAACATTCTTACCTGGTTCTGTTTCTTTTCAAGACCTGAGCTCGAGGAGGATGATTAACACTGCCTGGCACAATAGGGATCTTTACTTGCTTGATGATGATGCCTCCTCTAGTAACATTTCTAGAACTAGTCTTTTACCTTCCTACTTTACCACTTCTGAAAAAGATCCTATGTTGTGGCATTTCTGTTTAGGCCATCCCAACTTTAAATATATGAGATACCTATTTCCTCATCTCTTTTCTAAAGTTGATATTTCTTCCTTAACTTGTGATGTGTGCAAAAAAGCTAAACAACACCGAGTCTCGTTTTCCTCGCAACCCTATAAGCCAACCCGACCTTTTACTCTTGTCCATAGTGATATTTGGTGACCATCCAAGGTCACTACCTCCTCCGAAAAACGATGATTTGACCTTTATTGATGACTATACTTGTCTTACTTGGGTTTTCTTGATCTCCGACAAATCTGAAGTTACCACTACATTCTGGGACTTCTATCACACCATAGAAATGAAATTCAATACAAAGATTGCAATCCTATGAGTGATAATGGACGTGAGTTTCAAAACCACTCTTAACGAATTCTTATCCACTAAAGGAATTGTTCACAAAAATTCTTGTGCTTACAATCTCCA

Coding sequence (CDS)

ATGTCGATTAGCAAGATTACTCAAGAATTAAACTGCAAAGCAACATTCTTACCTGGTTCTGTTTCTTTTCAAGACCTGAGCTCGAGGAGGATGATTAACACTGCCTGGCACAATAGGGATCTTTACTTGCTTGATGATGATGCCTCCTCTAGTAACATTTCTAGAACTAGTCTTTTACCTTCCTACTTTACCACTTCTGAAAAAGATCCTATGTTGTGGCATTTCTGTTTAGGCCATCCCAACTTTAAATATATGAGATACCTATTTCCTCATCTCTTTTCTAAAGTTGATATTTCTTCCTTAACTTGTGATGTGTGCAAAAAAGCTAAACAACACCGAGTCTCGTTTTCCTCGCAACCCTATAAGCCAACCCGACCTTTTACTCTTGTCCATAGTGATATTTGGTGA

Protein sequence

MSISKITQELNCKATFLPGSVSFQDLSSRRMINTAWHNRDLYLLDDDASSSNISRTSLLPSYFTTSEKDPMLWHFCLGHPNFKYMRYLFPHLFSKVDISSLTCDVCKKAKQHRVSFSSQPYKPTRPFTLVHSDIW*

Homology

[Close]

BLAST of CSPI04G16960 vs. ExPASy TrEMBL
Match: A0A5D3BQI5 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold680G00030 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 1.6e-52
Identity = 99/135 (73.33%), Postives = 115/135 (85.19%), Query Frame = 0


Query: 1   MSISKITQELNCKATFLPGSVSFQDLSSRRMINTAWHNRDLYLLDDDASSSNISRTSLLP 60
           +SISKIT EL+CKATFLP SV FQDL+S R I TA H+R +Y+L+DD S SNIS TSLL 
Sbjct: 416 LSISKITHELHCKATFLPESVCFQDLNSERTIGTARHSRGIYILNDDTSGSNISTTSLLS 475

Query: 61  SYFTTSEKDPMLWHFCLGHPNFKYMRYLFPHLFSKVDISSLTCDVCKKAKQHRVSFSSQP 120
           SYF+TSE D MLWHF LGHPN  YM+YLFPHLF K+D+SSL+CDVC +AKQHRVSF SQP
Sbjct: 476 SYFSTSEHDFMLWHFRLGHPNITYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFPSQP 535

Query: 121 YKPTRPFTLVHSDIW 136
           YKPT+PFTL+HSD+W
Sbjct: 536 YKPTQPFTLIHSDVW 550

[Close]

BLAST of CSPI04G16960 vs. ExPASy TrEMBL
Match: A0A5A7SXY5 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G00130 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 1.6e-52
Identity = 100/135 (74.07%), Postives = 117/135 (86.67%), Query Frame = 0


Query: 1   MSISKITQELNCKATFLPGSVSFQDLSSRRMINTAWHNRDLYLLDDDASSSNISRTSLLP 60
           +SISKIT+EL+CKA FLP SV FQD+SS R I TA H+R LY+LDDD S S++SR SLL 
Sbjct: 242 LSISKITRELHCKAIFLPKSVYFQDMSSGRTIGTARHSRRLYILDDDTSCSSLSRVSLLS 301

Query: 61  SYFTTSEKDPMLWHFCLGHPNFKYMRYLFPHLFSKVDISSLTCDVCKKAKQHRVSFSSQP 120
           SYF+TSE+D MLWHF LGHPNF YM+YLFPHLFSK+D+SSL+CDVC +AKQHRVSF SQP
Sbjct: 302 SYFSTSEQDCMLWHFRLGHPNFTYMQYLFPHLFSKLDVSSLSCDVCIRAKQHRVSFPSQP 361

Query: 121 YKPTRPFTLVHSDIW 136
           YKPT+PF L+HSDIW
Sbjct: 362 YKPTQPFNLIHSDIW 376

[Close]

BLAST of CSPI04G16960 vs. ExPASy TrEMBL
Match: A0A5D3BJK7 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G001020 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.7e-52
Identity = 99/135 (73.33%), Postives = 117/135 (86.67%), Query Frame = 0


Query: 1   MSISKITQELNCKATFLPGSVSFQDLSSRRMINTAWHNRDLYLLDDDASSSNISRTSLLP 60
           +SISKIT+EL+CKA FLP SV FQD+SS R I TA H+R LY+LDDD S S++SR SLL 
Sbjct: 550 LSISKITRELHCKAIFLPESVYFQDMSSGRTIGTARHSRGLYILDDDTSCSSLSRVSLLS 609

Query: 61  SYFTTSEKDPMLWHFCLGHPNFKYMRYLFPHLFSKVDISSLTCDVCKKAKQHRVSFSSQP 120
           SYF+TSE+D MLWHF LGHPNF YM++LFPHLFSKVD+SSL+CDVC +AKQHRVSF SQP
Sbjct: 610 SYFSTSEQDCMLWHFRLGHPNFTYMQHLFPHLFSKVDVSSLSCDVCIRAKQHRVSFPSQP 669

Query: 121 YKPTRPFTLVHSDIW 136
           YKPT+PF L+HSD+W
Sbjct: 670 YKPTQPFNLIHSDVW 684

[Close]

BLAST of CSPI04G16960 vs. ExPASy TrEMBL
Match: A0A5D3C4T4 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G00040 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.7e-52
Identity = 99/135 (73.33%), Postives = 117/135 (86.67%), Query Frame = 0


Query: 1   MSISKITQELNCKATFLPGSVSFQDLSSRRMINTAWHNRDLYLLDDDASSSNISRTSLLP 60
           +SISKIT+EL+CKA FLP SV FQD+SS R I TA H+R LY+LDDD S S++SR SLL 
Sbjct: 550 LSISKITRELHCKAIFLPESVYFQDMSSGRTIGTARHSRGLYILDDDTSCSSLSRVSLLS 609

Query: 61  SYFTTSEKDPMLWHFCLGHPNFKYMRYLFPHLFSKVDISSLTCDVCKKAKQHRVSFSSQP 120
           SYF+TSE+D MLWHF LGHPNF YM++LFPHLFSKVD+SSL+CDVC +AKQHRVSF SQP
Sbjct: 610 SYFSTSEQDCMLWHFRLGHPNFTYMQHLFPHLFSKVDVSSLSCDVCIRAKQHRVSFPSQP 669

Query: 121 YKPTRPFTLVHSDIW 136
           YKPT+PF L+HSD+W
Sbjct: 670 YKPTQPFNLIHSDVW 684

[Close]

BLAST of CSPI04G16960 vs. ExPASy TrEMBL
Match: A0A5A7VLQ7 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold115G00690 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.7e-52
Identity = 99/135 (73.33%), Postives = 117/135 (86.67%), Query Frame = 0


Query: 1   MSISKITQELNCKATFLPGSVSFQDLSSRRMINTAWHNRDLYLLDDDASSSNISRTSLLP 60
           +SISKIT+EL+CKA FLP SV FQD+SS R I TA H+R LY+LDDD S S++SR SLL 
Sbjct: 550 LSISKITRELHCKAIFLPESVYFQDMSSGRTIGTARHSRGLYILDDDTSCSSLSRVSLLS 609

Query: 61  SYFTTSEKDPMLWHFCLGHPNFKYMRYLFPHLFSKVDISSLTCDVCKKAKQHRVSFSSQP 120
           SYF+TSE+D MLWHF LGHPNF YM++LFPHLFSKVD+SSL+CDVC +AKQHRVSF SQP
Sbjct: 610 SYFSTSEQDCMLWHFRLGHPNFTYMQHLFPHLFSKVDVSSLSCDVCIRAKQHRVSFPSQP 669

Query: 121 YKPTRPFTLVHSDIW 136
           YKPT+PF L+HSD+W
Sbjct: 670 YKPTQPFNLIHSDVW 684

[Close]

BLAST of CSPI04G16960 vs. NCBI nr
Match: KAA0034029.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 215.3 bits (547), Expect = 3.2e-52
Identity = 100/135 (74.07%), Postives = 117/135 (86.67%), Query Frame = 0


Query: 1   MSISKITQELNCKATFLPGSVSFQDLSSRRMINTAWHNRDLYLLDDDASSSNISRTSLLP 60
           +SISKIT+EL+CKA FLP SV FQD+SS R I TA H+R LY+LDDD S S++SR SLL 
Sbjct: 242 LSISKITRELHCKAIFLPKSVYFQDMSSGRTIGTARHSRRLYILDDDTSCSSLSRVSLLS 301

Query: 61  SYFTTSEKDPMLWHFCLGHPNFKYMRYLFPHLFSKVDISSLTCDVCKKAKQHRVSFSSQP 120
           SYF+TSE+D MLWHF LGHPNF YM+YLFPHLFSK+D+SSL+CDVC +AKQHRVSF SQP
Sbjct: 302 SYFSTSEQDCMLWHFRLGHPNFTYMQYLFPHLFSKLDVSSLSCDVCIRAKQHRVSFPSQP 361

Query: 121 YKPTRPFTLVHSDIW 136
           YKPT+PF L+HSDIW
Sbjct: 362 YKPTQPFNLIHSDIW 376

[Close]

BLAST of CSPI04G16960 vs. NCBI nr
Match: TYK02021.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 215.3 bits (547), Expect = 3.2e-52
Identity = 99/135 (73.33%), Postives = 115/135 (85.19%), Query Frame = 0


Query: 1   MSISKITQELNCKATFLPGSVSFQDLSSRRMINTAWHNRDLYLLDDDASSSNISRTSLLP 60
           +SISKIT EL+CKATFLP SV FQDL+S R I TA H+R +Y+L+DD S SNIS TSLL 
Sbjct: 416 LSISKITHELHCKATFLPESVCFQDLNSERTIGTARHSRGIYILNDDTSGSNISTTSLLS 475

Query: 61  SYFTTSEKDPMLWHFCLGHPNFKYMRYLFPHLFSKVDISSLTCDVCKKAKQHRVSFSSQP 120
           SYF+TSE D MLWHF LGHPN  YM+YLFPHLF K+D+SSL+CDVC +AKQHRVSF SQP
Sbjct: 476 SYFSTSEHDFMLWHFRLGHPNITYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFPSQP 535

Query: 121 YKPTRPFTLVHSDIW 136
           YKPT+PFTL+HSD+W
Sbjct: 536 YKPTQPFTLIHSDVW 550

[Close]

BLAST of CSPI04G16960 vs. NCBI nr
Match: TYJ99952.1 (Beta-galactosidase [Cucumis melo var. makuwa] >TYK02395.1 Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 214.5 bits (545), Expect = 5.5e-52
Identity = 99/135 (73.33%), Postives = 117/135 (86.67%), Query Frame = 0


Query: 1   MSISKITQELNCKATFLPGSVSFQDLSSRRMINTAWHNRDLYLLDDDASSSNISRTSLLP 60
           +SISKIT+EL+CKA FLP SV FQD+SS R I TA H+R LY+LDDD S S++SR SLL 
Sbjct: 550 LSISKITRELHCKAIFLPESVYFQDMSSGRTIGTARHSRGLYILDDDTSCSSLSRVSLLS 609

Query: 61  SYFTTSEKDPMLWHFCLGHPNFKYMRYLFPHLFSKVDISSLTCDVCKKAKQHRVSFSSQP 120
           SYF+TSE+D MLWHF LGHPNF YM++LFPHLFSKVD+SSL+CDVC +AKQHRVSF SQP
Sbjct: 610 SYFSTSEQDCMLWHFRLGHPNFTYMQHLFPHLFSKVDVSSLSCDVCIRAKQHRVSFPSQP 669

Query: 121 YKPTRPFTLVHSDIW 136
           YKPT+PF L+HSD+W
Sbjct: 670 YKPTQPFNLIHSDVW 684

[Close]

BLAST of CSPI04G16960 vs. NCBI nr
Match: TYK08054.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 214.5 bits (545), Expect = 5.5e-52
Identity = 99/135 (73.33%), Postives = 117/135 (86.67%), Query Frame = 0


Query: 1   MSISKITQELNCKATFLPGSVSFQDLSSRRMINTAWHNRDLYLLDDDASSSNISRTSLLP 60
           +SISKIT+EL+CKA FLP SV FQD+SS R I TA H+R LY+LDDD S S++SR SLL 
Sbjct: 550 LSISKITRELHCKAIFLPESVYFQDMSSGRTIGTARHSRGLYILDDDTSCSSLSRVSLLS 609

Query: 61  SYFTTSEKDPMLWHFCLGHPNFKYMRYLFPHLFSKVDISSLTCDVCKKAKQHRVSFSSQP 120
           SYF+TSE+D MLWHF LGHPNF YM++LFPHLFSKVD+SSL+CDVC +AKQHRVSF SQP
Sbjct: 610 SYFSTSEQDCMLWHFRLGHPNFTYMQHLFPHLFSKVDVSSLSCDVCIRAKQHRVSFPSQP 669

Query: 121 YKPTRPFTLVHSDIW 136
           YKPT+PF L+HSD+W
Sbjct: 670 YKPTQPFNLIHSDVW 684

[Close]

BLAST of CSPI04G16960 vs. NCBI nr
Match: KAA0048203.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 214.5 bits (545), Expect = 5.5e-52
Identity = 99/135 (73.33%), Postives = 117/135 (86.67%), Query Frame = 0


Query: 1   MSISKITQELNCKATFLPGSVSFQDLSSRRMINTAWHNRDLYLLDDDASSSNISRTSLLP 60
           +SISKIT+EL+CKA FLP SV FQD+SS R I TA H+R LY+LDDD S S++SR SLL 
Sbjct: 550 LSISKITRELHCKAIFLPESVYFQDMSSGRTIGTARHSRGLYILDDDTSCSSLSRVSLLS 609

Query: 61  SYFTTSEKDPMLWHFCLGHPNFKYMRYLFPHLFSKVDISSLTCDVCKKAKQHRVSFSSQP 120
           SYF+TSE+D MLWHF LGHPNF YM++LFPHLFSKVD+SSL+CDVC +AKQHRVSF SQP
Sbjct: 610 SYFSTSEQDCMLWHFRLGHPNFTYMQHLFPHLFSKVDVSSLSCDVCIRAKQHRVSFPSQP 669

Query: 121 YKPTRPFTLVHSDIW 136
           YKPT+PF L+HSD+W
Sbjct: 670 YKPTQPFNLIHSDVW 684

The following BLAST results are available for this feature:

BLAST of CSPI04G16960 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI04G16960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BQI5	1.6e-52	73.33	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold680G0...	[more]
A0A5A7SXY5	1.6e-52	74.07	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G00...	[more]
A0A5D3BJK7	2.7e-52	73.33	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G0...	[more]
A0A5D3C4T4	2.7e-52	73.33	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G00...	[more]
A0A5A7VLQ7	2.7e-52	73.33	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold115G0...	[more]

BLAST of CSPI04G16960 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0034029.1	3.2e-52	74.07	Beta-galactosidase [Cucumis melo var. makuwa]	[more]
TYK02021.1	3.2e-52	73.33	Beta-galactosidase [Cucumis melo var. makuwa]	[more]
TYJ99952.1	5.5e-52	73.33	Beta-galactosidase [Cucumis melo var. makuwa] >TYK02395.1 Beta-galactosidase [Cu...	[more]
TYK08054.1	5.5e-52	73.33	Beta-galactosidase [Cucumis melo var. makuwa]	[more]
KAA0048203.1	5.5e-52	73.33	Beta-galactosidase [Cucumis melo var. makuwa]	[more]

BLAST of CSPI04G16960 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 40..111 e-value: 1.1E-14 score: 54.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G16960.1	CSPI04G16960.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0003676	nucleic acid binding