CSPI04G16610 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G16610
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	High mobility group B protein 6
Location	Chr4: 14005958 .. 14007135 (-)
RNA-Seq Expression	CSPI04G16610
Synteny	CSPI04G16610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACAAAATTCCAAATCCTTCAGGAAAGAAAAAACCCCTTTTTTTTCCATTCTTCTCTTTTTCTATGATTCCATTTCTTCACTTTCAAACCAATTTTTCCATCTCCACTTCACACCAATATGCAAACTCTCCACCATCCCTTACCCCCTCCTCGAGATCTTCCTCTCAAGTCTGGCCGCCGCCCACTCCAGCCAAAGAATTCTCTGCCAAATCCTGTCCCTTCCGTTGCCAAAATCATCAAATCCAAGCCGGAAATCATCCAGATCTCCCTCTCCGGCGACGCCAATAAGGAAAATCATCCGCCGCCAACAACGGTGAGTATTGAGTCATGTGATTTGTCTCTGGCGGATGAACTGAATGCGGTTAAGAGGAAAATGGAGAGATTGAGATTGGACGGTGAACGAACGGAGAAGATGTTGAGAGAGAGGGATTTGGTTTTGGAGTTACGGATGAAGGAACTGTTACAGAGAAGTCAGGAACAGAGAGATCTGGAAATGGAAGTCGATAGGTTATTTAGATTGAAGGAACTTAGATCGTACTGTATGGTAAAATTGCTGAACGTTTTTTTTTTCTTTGGTTAGTTTGAAGTTTTGATTCGTGTTTCATTTGCTGATATTTCTTTTTATGATTTAAATCAGAGGATTTCTCCGATTCGAAGTCTCAGAGAGAAAGAACGAGAAAAGATTTTCACCGATGCACAATTTCCGGTACGTTCTGATCTAGAATCTTCAAAGCTTATTTCTCGATTCATCTTGTGAAATCAATCCACAATCCACTGATTTGTTTCAGGAATTTGAAATCGGCGATGGAGAAGAATCTGTCGGCGAAAACTCCTCGTTGGATTCTTCAGAATTCGTAACAGGTTTTTGAAATCGATTCTAAAGTTTAGTGGATTTGCCCTAACTTTCCGATCATTACTACATCTTGTACGGGTTTTCAAAAGTAGAAATTAGAAAAGGAAATGGATGTAATACCTCATTATGATTTTCTTTATGCATTGATGGAAGCTTTTGAGTTGTTGTAATCAATGTGATTCTTCCTCCATCTTCTTCTTCTTCTTTTTCTTCACTTCAATTAATGTTGGAAAGTGAAGAAACTCCAAATCGTGTTCGTGAATTTTTCTCTCGCCCCTCTATATTCTTCATGATATGTAATGAATTTTGTGAGTGAGAGTTTAGG

mRNA sequence

CACAAAATTCCAAATCCTTCAGGAAAGAAAAAACCCCTTTTTTTTCCATTCTTCTCTTTTTCTATGATTCCATTTCTTCACTTTCAAACCAATTTTTCCATCTCCACTTCACACCAATATGCAAACTCTCCACCATCCCTTACCCCCTCCTCGAGATCTTCCTCTCAAGTCTGGCCGCCGCCCACTCCAGCCAAAGAATTCTCTGCCAAATCCTGTCCCTTCCGTTGCCAAAATCATCAAATCCAAGCCGGAAATCATCCAGATCTCCCTCTCCGGCGACGCCAATAAGGAAAATCATCCGCCGCCAACAACGGTGAGTATTGAGTCATGTGATTTGTCTCTGGCGGATGAACTGAATGCGGTTAAGAGGAAAATGGAGAGATTGAGATTGGACGGTGAACGAACGGAGAAGATGTTGAGAGAGAGGGATTTGGTTTTGGAGTTACGGATGAAGGAACTGTTACAGAGAAGTCAGGAACAGAGAGATCTGGAAATGGAAGTCGATAGGTTATTTAGATTGAAGGAACTTAGATCGTACTGTATGGTAAAATTGCTGAACGTTTTTTTTTTCTTTGGTTAGTTTGAAGTTTTGATTCGTGTTTCATTTGCTGATATTTCTTTTTATGATTTAAATCAGAGGATTTCTCCGATTCGAAGTCTCAGAGAGAAAGAACGAGAAAAGATTTTCACCGATGCACAATTTCCGGAATTTGAAATCGGCGATGGAGAAGAATCTGTCGGCGAAAACTCCTCGTTGGATTCTTCAGAATTCGTAACAGGTTTTTGAAATCGATTCTAAAGTTTAGTGGATTTGCCCTAACTTTCCGATCATTACTACATCTTGTACGGGTTTTCAAAAGTAGAAATTAGAAAAGGAAATGGATGTAATACCTCATTATGATTTTCTTTATGCATTGATGGAAGCTTTTGAGTTGTTGTAATCAATGTGATTCTTCCTCCATCTTCTTCTTCTTCTTTTTCTTCACTTCAATTAATGTTGGAAAGTGAAGAAACTCCAAATCGTGTTCGTGAATTTTTCTCTCGCCCCTCTATATTCTTCATGATATGTAATGAATTTTGTGAGTGAGAGTTTAGG

Coding sequence (CDS)

ATGCAAACTCTCCACCATCCCTTACCCCCTCCTCGAGATCTTCCTCTCAAGTCTGGCCGCCGCCCACTCCAGCCAAAGAATTCTCTGCCAAATCCTGTCCCTTCCGTTGCCAAAATCATCAAATCCAAGCCGGAAATCATCCAGATCTCCCTCTCCGGCGACGCCAATAAGGAAAATCATCCGCCGCCAACAACGGTGAGTATTGAGTCATGTGATTTGTCTCTGGCGGATGAACTGAATGCGGTTAAGAGGAAAATGGAGAGATTGAGATTGGACGGTGAACGAACGGAGAAGATGTTGAGAGAGAGGGATTTGGTTTTGGAGTTACGGATGAAGGAACTGTTACAGAGAAGTCAGGAACAGAGAGATCTGGAAATGGAAGTCGATAGGTTATTTAGATTGAAGGAACTTAGATCGTACTGTATGGTAAAATTGCTGAACGTTTTTTTTTTCTTTGGTTAG

Protein sequence

MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMVKLLNVFFFFG*

Homology

[Close]

BLAST of CSPI04G16610 vs. ExPASy TrEMBL
Match: A0A0A0L063 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G334650 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 6.1e-69
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENH 60
           MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENH
Sbjct: 1   MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENH 60

Query: 61  PPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE 120
           PPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE
Sbjct: 61  PPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE 120

Query: 121 QRDLEMEVDRLFRLKELRSYCM 143
           QRDLEMEVDRLFRLKELRSYCM
Sbjct: 121 QRDLEMEVDRLFRLKELRSYCM 142

[Close]

BLAST of CSPI04G16610 vs. ExPASy TrEMBL
Match: A0A5A7SJQ2 (High mobility group B protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1220G00510 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 7.4e-67
Identity = 139/142 (97.89%), Postives = 140/142 (98.59%), Query Frame = 0


Query: 1   MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENH 60
           MQTLHHPLP PRD+PLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENH
Sbjct: 1   MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENH 60

Query: 61  PPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE 120
           PP TTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE
Sbjct: 61  PPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE 120

Query: 121 QRDLEMEVDRLFRLKELRSYCM 143
           QRDLEMEVDRLFRLKELRSYCM
Sbjct: 121 QRDLEMEVDRLFRLKELRSYCM 142

[Close]

BLAST of CSPI04G16610 vs. ExPASy TrEMBL
Match: A0A5D3CEI7 (High mobility group B protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G00430 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 1.1e-65
Identity = 138/142 (97.18%), Postives = 139/142 (97.89%), Query Frame = 0


Query: 1   MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENH 60
           MQTLHHPLP PRD+PLKSGRRPLQPKNSLPN VPSVAKIIKSKPEIIQISLSGDANKENH
Sbjct: 1   MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENH 60

Query: 61  PPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE 120
           PP TTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE
Sbjct: 61  PPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE 120

Query: 121 QRDLEMEVDRLFRLKELRSYCM 143
           QRDLEMEVDRLFRLKELRSYCM
Sbjct: 121 QRDLEMEVDRLFRLKELRSYCM 142

[Close]

BLAST of CSPI04G16610 vs. ExPASy TrEMBL
Match: A0A1S3CJ78 (high mobility group B protein 6 OS=Cucumis melo OX=3656 GN=LOC103501469 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 1.1e-65
Identity = 138/142 (97.18%), Postives = 139/142 (97.89%), Query Frame = 0


Query: 1   MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENH 60
           MQTLHHPLP PRD+PLKSGRRPLQPKNSLPN VPSVAKIIKSKPEIIQISLSGDANKENH
Sbjct: 1   MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENH 60

Query: 61  PPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE 120
           PP TTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE
Sbjct: 61  PPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE 120

Query: 121 QRDLEMEVDRLFRLKELRSYCM 143
           QRDLEMEVDRLFRLKELRSYCM
Sbjct: 121 QRDLEMEVDRLFRLKELRSYCM 142

[Close]

BLAST of CSPI04G16610 vs. ExPASy TrEMBL
Match: A0A6J1ISM0 (high mobility group B protein 13-like OS=Cucurbita maxima OX=3661 GN=LOC111478322 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 7.2e-54
Identity = 118/144 (81.94%), Postives = 128/144 (88.89%), Query Frame = 0


Query: 1   MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENH 60
           MQ LH PL  P DLPLKSGRRPLQPKNSLPNPVP+VAK+IKSKPE IQISL  DANKENH
Sbjct: 1   MQALHQPLATPHDLPLKSGRRPLQPKNSLPNPVPAVAKVIKSKPERIQISLPTDANKENH 60

Query: 61  PP--PTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRS 120
           PP      S+ESCDLSLADELNAVKRK+ERLRL+ ERTE+ML+ERD++LELRMKELLQRS
Sbjct: 61  PPIHAKAASVESCDLSLADELNAVKRKLERLRLERERTEQMLKERDMILELRMKELLQRS 120

Query: 121 QEQRDLEMEVDRLFRLKELRSYCM 143
           +EQRDLEMEVDRLFRLKELR YCM
Sbjct: 121 KEQRDLEMEVDRLFRLKELRLYCM 144

[Close]

BLAST of CSPI04G16610 vs. NCBI nr
Match: XP_004142680.1 (high mobility group B protein 6 [Cucumis sativus] >KGN54454.1 hypothetical protein Csa_012022 [Cucumis sativus])

HSP 1 Score: 270.0 bits (689), Expect = 1.3e-68
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENH 60
           MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENH
Sbjct: 1   MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENH 60

Query: 61  PPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE 120
           PPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE
Sbjct: 61  PPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE 120

Query: 121 QRDLEMEVDRLFRLKELRSYCM 143
           QRDLEMEVDRLFRLKELRSYCM
Sbjct: 121 QRDLEMEVDRLFRLKELRSYCM 142

[Close]

BLAST of CSPI04G16610 vs. NCBI nr
Match: KAA0025412.1 (high mobility group B protein 6 [Cucumis melo var. makuwa])

HSP 1 Score: 263.1 bits (671), Expect = 1.5e-66
Identity = 139/142 (97.89%), Postives = 140/142 (98.59%), Query Frame = 0


Query: 1   MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENH 60
           MQTLHHPLP PRD+PLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENH
Sbjct: 1   MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENH 60

Query: 61  PPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE 120
           PP TTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE
Sbjct: 61  PPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE 120

Query: 121 QRDLEMEVDRLFRLKELRSYCM 143
           QRDLEMEVDRLFRLKELRSYCM
Sbjct: 121 QRDLEMEVDRLFRLKELRSYCM 142

[Close]

BLAST of CSPI04G16610 vs. NCBI nr
Match: XP_008463266.1 (PREDICTED: high mobility group B protein 6 [Cucumis melo] >TYK09760.1 high mobility group B protein 6 [Cucumis melo var. makuwa])

HSP 1 Score: 259.2 bits (661), Expect = 2.2e-65
Identity = 138/142 (97.18%), Postives = 139/142 (97.89%), Query Frame = 0


Query: 1   MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENH 60
           MQTLHHPLP PRD+PLKSGRRPLQPKNSLPN VPSVAKIIKSKPEIIQISLSGDANKENH
Sbjct: 1   MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENH 60

Query: 61  PPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE 120
           PP TTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE
Sbjct: 61  PPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE 120

Query: 121 QRDLEMEVDRLFRLKELRSYCM 143
           QRDLEMEVDRLFRLKELRSYCM
Sbjct: 121 QRDLEMEVDRLFRLKELRSYCM 142

[Close]

BLAST of CSPI04G16610 vs. NCBI nr
Match: XP_038883293.1 (uncharacterized protein LOC120074285 [Benincasa hispida])

HSP 1 Score: 236.1 bits (601), Expect = 2.0e-58
Identity = 130/148 (87.84%), Postives = 133/148 (89.86%), Query Frame = 0


Query: 1   MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENH 60
           MQTLHHPL  P+DLPLKSGRRPLQPKNSLPN  PSVAK IKSKPE IQISLSGDANKENH
Sbjct: 1   MQTLHHPLATPQDLPLKSGRRPLQPKNSLPNSGPSVAKFIKSKPERIQISLSGDANKENH 60

Query: 61  PP------PTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKEL 120
           PP       TT SIESCD SLADELNAVKRK+ERLRLDGERTE+MLRERDLVLELRMKEL
Sbjct: 61  PPIHATATTTTASIESCDSSLADELNAVKRKLERLRLDGERTEQMLRERDLVLELRMKEL 120

Query: 121 LQRSQEQRDLEMEVDRLFRLKELRSYCM 143
           LQRSQEQRDLEMEVDRLFRLKELRSYCM
Sbjct: 121 LQRSQEQRDLEMEVDRLFRLKELRSYCM 148

[Close]

BLAST of CSPI04G16610 vs. NCBI nr
Match: XP_022978293.1 (high mobility group B protein 13-like [Cucurbita maxima])

HSP 1 Score: 219.9 bits (559), Expect = 1.5e-53
Identity = 118/144 (81.94%), Postives = 128/144 (88.89%), Query Frame = 0


Query: 1   MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENH 60
           MQ LH PL  P DLPLKSGRRPLQPKNSLPNPVP+VAK+IKSKPE IQISL  DANKENH
Sbjct: 1   MQALHQPLATPHDLPLKSGRRPLQPKNSLPNPVPAVAKVIKSKPERIQISLPTDANKENH 60

Query: 61  PP--PTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRS 120
           PP      S+ESCDLSLADELNAVKRK+ERLRL+ ERTE+ML+ERD++LELRMKELLQRS
Sbjct: 61  PPIHAKAASVESCDLSLADELNAVKRKLERLRLERERTEQMLKERDMILELRMKELLQRS 120

Query: 121 QEQRDLEMEVDRLFRLKELRSYCM 143
           +EQRDLEMEVDRLFRLKELR YCM
Sbjct: 121 KEQRDLEMEVDRLFRLKELRLYCM 144

[Close]

BLAST of CSPI04G16610 vs. TAIR 10
Match: AT5G01910.1 (unknown protein; Has 66 Blast hits to 66 proteins in 27 species: Archae - 0; Bacteria - 2; Metazoa - 18; Fungi - 7; Plants - 29; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 83.6 bits (205), Expect = 1.5e-16
Identity = 57/123 (46.34%), Postives = 77/123 (62.60%), Query Frame = 0


Query: 18  SGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPPTTVSIESCDLSLAD 77
           SGR+ LQP+N    P    A  +K K        + +  KEN    T++     D SLA+
Sbjct: 4   SGRKALQPRNIYQTPKED-AFFVKPK--------AAEKLKENLNLETSI-----DASLAE 63

Query: 78  ELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKEL 137
           EL+A K+K+ERLR D E TEK+L+ERD  ++L M  LLQR + Q+ LE++VDRLFRLKEL
Sbjct: 64  ELSAFKKKLERLREDRESTEKLLKERDEAMDLHMSHLLQRGETQKSLEIQVDRLFRLKEL 112

Query: 138 RSY 141
            +Y
Sbjct: 124 HAY 112

[Close]

BLAST of CSPI04G16610 vs. TAIR 10
Match: AT5G01910.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 83.6 bits (205), Expect = 1.5e-16
Identity = 57/123 (46.34%), Postives = 77/123 (62.60%), Query Frame = 0


Query: 18  SGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPPTTVSIESCDLSLAD 77
           SGR+ LQP+N    P    A  +K K        + +  KEN    T++     D SLA+
Sbjct: 4   SGRKALQPRNIYQTPKED-AFFVKPK--------AAEKLKENLNLETSI-----DASLAE 63

Query: 78  ELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKEL 137
           EL+A K+K+ERLR D E TEK+L+ERD  ++L M  LLQR + Q+ LE++VDRLFRLKEL
Sbjct: 64  ELSAFKKKLERLREDRESTEKLLKERDEAMDLHMSHLLQRGETQKSLEIQVDRLFRLKEL 112

Query: 138 RSY 141
            +Y
Sbjct: 124 HAY 112

The following BLAST results are available for this feature:

BLAST of CSPI04G16610 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI04G16610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L063	6.1e-69	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G334650 PE=4 SV=1	[more]
A0A5A7SJQ2	7.4e-67	97.89	High mobility group B protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5D3CEI7	1.1e-65	97.18	High mobility group B protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3CJ78	1.1e-65	97.18	high mobility group B protein 6 OS=Cucumis melo OX=3656 GN=LOC103501469 PE=4 SV=...	[more]
A0A6J1ISM0	7.2e-54	81.94	high mobility group B protein 13-like OS=Cucurbita maxima OX=3661 GN=LOC11147832...	[more]

BLAST of CSPI04G16610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004142680.1	1.3e-68	100.00	high mobility group B protein 6 [Cucumis sativus] >KGN54454.1 hypothetical prote...	[more]
KAA0025412.1	1.5e-66	97.89	high mobility group B protein 6 [Cucumis melo var. makuwa]	[more]
XP_008463266.1	2.2e-65	97.18	PREDICTED: high mobility group B protein 6 [Cucumis melo] >TYK09760.1 high mobil...	[more]
XP_038883293.1	2.0e-58	87.84	uncharacterized protein LOC120074285 [Benincasa hispida]	[more]
XP_022978293.1	1.5e-53	81.94	high mobility group B protein 13-like [Cucurbita maxima]	[more]

BLAST of CSPI04G16610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01910.1	1.5e-16	46.34	unknown protein; Has 66 Blast hits to 66 proteins in 27 species: Archae - 0; Bac...	[more]
AT5G01910.2	1.5e-16	46.34	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 79..99
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35
None	No IPR available	PANTHER	PTHR36790	MYELIN TRANSCRIPTION FACTOR	coord: 1..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G16610.1	CSPI04G16610.1	mRNA