CSPI04G16420 (gene) Cucumber (PI 183967) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GCCTTTTTATATTTTATATTTTTGGTATTGGGGACCAAAGTGTGTGTGTGTGTGTGTGTTGATGCACATTATAAACACAGTCCTGGGGACCCTAAACACAATGGCCGATAGAAATTGAAAAACAATTCGGAGATTCCATTGCTTTTTCTTCAACATCATACTTACAATTATCAATATTAATAATAATGGTGTGTGAAACCTCCGATTATCCTCAGAAATCTCTCCAATTCAAGCAAAATGACAAATTCATCTCCAAAATTCTGTCACGAGAAAGTTCCAGAGCCAATTACTCTTCAAGAATCTACTACGGCGGATTGGCCGGCGCCGTTCCCTTCGTTTGGGAGTCTCAGCCAGGTACGCCTATACACCGATTTTCCGATGACCTAACTCCTCCTCTAACTCCTCCTCCTTCTTACTTTTCCGATTCCCTCAAAAAACCGCTCAAGAAACGTTCCAAATCCCTCTCTCTTCTTCACATCTTCTTCAATTCCAAGAGGAAATTCGATCTCCTGTCTCCACCGCCCGTTTCTAAATCCCCCTCATTGTCGTCTTCCGGATCCGTGTTCGACTCGGCCGCCGGCGCGAAGTTCACAGGGCGACGCTCCGCGCGGCGGTTTCCGACTGAAAAGGAGGAAGAGAATGCGGCGGCTACTAGTTCGGTTCTTTGTTTCGGAATCGGTAGGTGAGCGGGCGGTATACGGTTCTGAATCTGAATCGGAATGGGAATGGGAGTAAAGGTTTTTAGAATAATGGTTTTGTGCATTTGGTGTATCGACAACGCCAAAGGTATTGGTTGAAAATTTGTAAAATTAATAATAATGACAA GCCTTTTTATATTTTATATTTTTGGTATTGGGGACCAAAGTGTGTGTGTGTGTGTGTGTTGATGCACATTATAAACACAGTCCTGGGGACCCTAAACACAATGGCCGATAGAAATTGAAAAACAATTCGGAGATTCCATTGCTTTTTCTTCAACATCATACTTACAATTATCAATATTAATAATAATGGTGTGTGAAACCTCCGATTATCCTCAGAAATCTCTCCAATTCAAGCAAAATGACAAATTCATCTCCAAAATTCTGTCACGAGAAAGTTCCAGAGCCAATTACTCTTCAAGAATCTACTACGGCGGATTGGCCGGCGCCGTTCCCTTCGTTTGGGAGTCTCAGCCAGGTACGCCTATACACCGATTTTCCGATGACCTAACTCCTCCTCTAACTCCTCCTCCTTCTTACTTTTCCGATTCCCTCAAAAAACCGCTCAAGAAACGTTCCAAATCCCTCTCTCTTCTTCACATCTTCTTCAATTCCAAGAGGAAATTCGATCTCCTGTCTCCACCGCCCGTTTCTAAATCCCCCTCATTGTCGTCTTCCGGATCCGTGTTCGACTCGGCCGCCGGCGCGAAGTTCACAGGGCGACGCTCCGCGCGGCGGTTTCCGACTGAAAAGGAGGAAGAGAATGCGGCGGCTACTAGTTCGGTTCTTTGTTTCGGAATCGGTAGGTGAGCGGGCGGTATACGGTTCTGAATCTGAATCGGAATGGGAATGGGAGTAAAGGTTTTTAGAATAATGGTTTTGTGCATTTGGTGTATCGACAACGCCAAAGGTATTGGTTGAAAATTTGTAAAATTAATAATAATGACAA ATGGTGTGTGAAACCTCCGATTATCCTCAGAAATCTCTCCAATTCAAGCAAAATGACAAATTCATCTCCAAAATTCTGTCACGAGAAAGTTCCAGAGCCAATTACTCTTCAAGAATCTACTACGGCGGATTGGCCGGCGCCGTTCCCTTCGTTTGGGAGTCTCAGCCAGGTACGCCTATACACCGATTTTCCGATGACCTAACTCCTCCTCTAACTCCTCCTCCTTCTTACTTTTCCGATTCCCTCAAAAAACCGCTCAAGAAACGTTCCAAATCCCTCTCTCTTCTTCACATCTTCTTCAATTCCAAGAGGAAATTCGATCTCCTGTCTCCACCGCCCGTTTCTAAATCCCCCTCATTGTCGTCTTCCGGATCCGTGTTCGACTCGGCCGCCGGCGCGAAGTTCACAGGGCGACGCTCCGCGCGGCGGTTTCCGACTGAAAAGGAGGAAGAGAATGCGGCGGCTACTAGTTCGGTTCTTTGTTTCGGAATCGGTAGGTGA MVCETSDYPQKSLQFKQNDKFISKILSRESSRANYSSRIYYGGLAGAVPFVWESQPGTPIHRFSDDLTPPLTPPPSYFSDSLKKPLKKRSKSLSLLHIFFNSKRKFDLLSPPPVSKSPSLSSSGSVFDSAAGAKFTGRRSARRFPTEKEEENAAATSSVLCFGIGR* Homology
BLAST of CSPI04G16420 vs. ExPASy TrEMBL
Match: A0A0A0L1H9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G329820 PE=4 SV=1) HSP 1 Score: 325.5 bits (833), Expect = 1.3e-85 Identity = 164/166 (98.80%), Postives = 166/166 (100.00%), Query Frame = 0
BLAST of CSPI04G16420 vs. ExPASy TrEMBL
Match: A0A1S3CL26 (uncharacterized protein LOC103502186 OS=Cucumis melo OX=3656 GN=LOC103502186 PE=4 SV=1) HSP 1 Score: 316.6 bits (810), Expect = 6.1e-83 Identity = 159/166 (95.78%), Postives = 161/166 (96.99%), Query Frame = 0
BLAST of CSPI04G16420 vs. ExPASy TrEMBL
Match: A0A6J1EB06 (uncharacterized protein LOC111432413 OS=Cucurbita moschata OX=3662 GN=LOC111432413 PE=4 SV=1) HSP 1 Score: 233.0 bits (593), Expect = 8.9e-58 Identity = 121/166 (72.89%), Postives = 134/166 (80.72%), Query Frame = 0
BLAST of CSPI04G16420 vs. ExPASy TrEMBL
Match: A0A6J1IKR7 (uncharacterized protein LOC111478334 OS=Cucurbita maxima OX=3661 GN=LOC111478334 PE=4 SV=1) HSP 1 Score: 221.9 bits (564), Expect = 2.1e-54 Identity = 114/141 (80.85%), Postives = 121/141 (85.82%), Query Frame = 0
BLAST of CSPI04G16420 vs. ExPASy TrEMBL
Match: A0A6J1CSP7 (uncharacterized protein LOC111013865 OS=Momordica charantia OX=3673 GN=LOC111013865 PE=4 SV=1) HSP 1 Score: 196.4 bits (498), Expect = 9.2e-47 Identity = 103/134 (76.87%), Postives = 111/134 (82.84%), Query Frame = 0
BLAST of CSPI04G16420 vs. NCBI nr
Match: XP_011653717.1 (uncharacterized protein LOC105435254 [Cucumis sativus]) HSP 1 Score: 325.5 bits (833), Expect = 2.7e-85 Identity = 164/166 (98.80%), Postives = 166/166 (100.00%), Query Frame = 0
BLAST of CSPI04G16420 vs. NCBI nr
Match: XP_008464261.1 (PREDICTED: uncharacterized protein LOC103502186 [Cucumis melo]) HSP 1 Score: 316.6 bits (810), Expect = 1.3e-82 Identity = 159/166 (95.78%), Postives = 161/166 (96.99%), Query Frame = 0
BLAST of CSPI04G16420 vs. NCBI nr
Match: XP_038882810.1 (uncharacterized protein LOC120073955 [Benincasa hispida]) HSP 1 Score: 283.9 bits (725), Expect = 9.1e-73 Identity = 148/170 (87.06%), Postives = 152/170 (89.41%), Query Frame = 0
BLAST of CSPI04G16420 vs. NCBI nr
Match: KAG6603545.1 (hypothetical protein SDJN03_04154, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033731.1 hypothetical protein SDJN02_03456, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 264.2 bits (674), Expect = 7.5e-67 Identity = 137/170 (80.59%), Postives = 147/170 (86.47%), Query Frame = 0
BLAST of CSPI04G16420 vs. NCBI nr
Match: KAG7027544.1 (hypothetical protein SDJN02_11558, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 236.5 bits (602), Expect = 1.7e-58 Identity = 126/169 (74.56%), Postives = 136/169 (80.47%), Query Frame = 0
BLAST of CSPI04G16420 vs. TAIR 10
Match: AT2G40475.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G56260.2); Has 477 Blast hits to 219 proteins in 41 species: Archae - 0; Bacteria - 4; Metazoa - 91; Fungi - 61; Plants - 144; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink). ) HSP 1 Score: 79.3 bits (194), Expect = 3.2e-15 Identity = 62/158 (39.24%), Postives = 85/158 (53.80%), Query Frame = 0
BLAST of CSPI04G16420 vs. TAIR 10
Match: AT5G01790.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; Has 121 Blast hits to 121 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 121; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 65.1 bits (157), Expect = 6.2e-11 Identity = 66/174 (37.93%), Postives = 84/174 (48.28%), Query Frame = 0
BLAST of CSPI04G16420 vs. TAIR 10
Match: AT3G56260.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40475.1). ) HSP 1 Score: 59.7 bits (143), Expect = 2.6e-09 Identity = 52/142 (36.62%), Postives = 71/142 (50.00%), Query Frame = 0
BLAST of CSPI04G16420 vs. TAIR 10
Match: AT1G06930.1 (unknown protein; Has 4478 Blast hits to 355 proteins in 82 species: Archae - 0; Bacteria - 29; Metazoa - 379; Fungi - 125; Plants - 120; Viruses - 25; Other Eukaryotes - 3800 (source: NCBI BLink). ) HSP 1 Score: 52.8 bits (125), Expect = 3.2e-07 Identity = 40/101 (39.60%), Postives = 46/101 (45.54%), Query Frame = 0
BLAST of CSPI04G16420 vs. TAIR 10
Match: AT4G25845.1 (BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 4B (TAIR:AT4G25850.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 52.4 bits (124), Expect = 4.1e-07 Identity = 28/60 (46.67%), Postives = 35/60 (58.33%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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