CSPI04G16280 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G16280
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Seed maturation protein PM41
Location	Chr4: 13567578 .. 13568210 (-)
RNA-Seq Expression	CSPI04G16280
Synteny	CSPI04G16280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGAAGAGAAGAAAGAGGAGGCAGAAGAGGTGGCAGATGGCAGGTGGCAGGTGCAGGTGAAAGAAAGCAGAACTTGGAGTTTCACCCATGGCCGCCACGCTACAAACTTGGCTCTCTCCTTTGGCATGTCCGCCACGAAATTACTCACTCATATCTTAATCCCAATCCCATTATTATTATATATATATTATAATACCCAATTTCGTTTTCCTACAGCCTAATTCTCTCTGAATATTAGAAAATCAAATTCCCTAAATAATAACAACAATAATAATGTCAGGAGCTCAGGGCGCCCAGCCGAAGGAATCGTTTACGGCAACCACTTACGAATCGGTCTCCGGTGGAGAGAACCGCACGAGAACCGATATCCGTTCCCGGGAGGACGCCGGGATGATTCAGATCGATAAACTTCAGGATAAAGTGGAAGACGCCGCGGGGAAAGGCGGTCCGGTGTTCGGTGCTGGGAAAGATGACAAAAAGCAAGACCTTGGAGTTACGGGCACTGGATAAGACCGAAAAGCTACAGTGGCTAGCACTTTTTAAATCTAAATTTGATCTTTTCTTTCATGTACGTACTGTTTCTTGTAGCATAACATATGCTTTTTTCTTTTTCTTTTTCTTTTTCCTTTGGTG

mRNA sequence

GTGAAGAGAAGAAAGAGGAGGCAGAAGAGGTGGCAGATGGCAGGTGGCAGGTGCAGGTGAAAGAAAGCAGAACTTGGAGTTTCACCCATGGCCGCCACGCTACAAACTTGGCTCTCTCCTTTGGCATGTCCGCCACGAAATTACTCACTCATATCTTAATCCCAATCCCATTATTATTATATATATATTATAATACCCAATTTCGTTTTCCTACAGCCTAATTCTCTCTGAATATTAGAAAATCAAATTCCCTAAATAATAACAACAATAATAATGTCAGGAGCTCAGGGCGCCCAGCCGAAGGAATCGTTTACGGCAACCACTTACGAATCGGTCTCCGGTGGAGAGAACCGCACGAGAACCGATATCCGTTCCCGGGAGGACGCCGGGATGATTCAGATCGATAAACTTCAGGATAAAGTGGAAGACGCCGCGGGGAAAGGCGGTCCGGTGTTCGGTGCTGGGAAAGATGACAAAAAGCAAGACCTTGGAGTTACGGGCACTGGATAAGACCGAAAAGCTACAGTGGCTAGCACTTTTTAAATCTAAATTTGATCTTTTCTTTCATGTACGTACTGTTTCTTGTAGCATAACATATGCTTTTTTCTTTTTCTTTTTCTTTTTCCTTTGGTG

Coding sequence (CDS)

ATGTCAGGAGCTCAGGGCGCCCAGCCGAAGGAATCGTTTACGGCAACCACTTACGAATCGGTCTCCGGTGGAGAGAACCGCACGAGAACCGATATCCGTTCCCGGGAGGACGCCGGGATGATTCAGATCGATAAACTTCAGGATAAAGTGGAAGACGCCGCGGGGAAAGGCGGTCCGGTGTTCGGTGCTGGGAAAGATGACAAAAAGCAAGACCTTGGAGTTACGGGCACTGGATAA

Protein sequence

MSGAQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPVFGAGKDDKKQDLGVTGTG*

Homology

[Close]

BLAST of CSPI04G16280 vs. ExPASy TrEMBL
Match: A0A0A0KY41 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G314500 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.6e-33
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MSGAQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPV 60
          MSGAQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDK+QDKVEDAAGKGGPV
Sbjct: 1  MSGAQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDKIQDKVEDAAGKGGPV 60

Query: 61 FGAGKDDKKQDLGVTGTG 79
          FGAGKDDKKQDLGVTGTG
Sbjct: 61 FGAGKDDKKQDLGVTGTG 78

[Close]

BLAST of CSPI04G16280 vs. ExPASy TrEMBL
Match: A0A5D3BF74 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold67599G00010 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 2.8e-33
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MSGAQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPV 60
          MSGAQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPV
Sbjct: 1  MSGAQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPV 60

Query: 61 FGAGKDDKKQDLGVTGTG 79
          FGAGK+DKKQDLGVTGTG
Sbjct: 61 FGAGKEDKKQDLGVTGTG 78

[Close]

BLAST of CSPI04G16280 vs. ExPASy TrEMBL
Match: A0A1S3CL14 (uncharacterized protein LOC103502173 OS=Cucumis melo OX=3656 GN=LOC103502173 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 2.8e-33
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MSGAQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPV 60
          MSGAQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPV
Sbjct: 1  MSGAQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPV 60

Query: 61 FGAGKDDKKQDLGVTGTG 79
          FGAGK+DKKQDLGVTGTG
Sbjct: 61 FGAGKEDKKQDLGVTGTG 78

[Close]

BLAST of CSPI04G16280 vs. ExPASy TrEMBL
Match: A0A6J1GD40 (uncharacterized protein LOC111453100 OS=Cucurbita moschata OX=3662 GN=LOC111453100 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 4.0e-32
Identity = 74/78 (94.87%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MSGAQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPV 60
          MSGAQGAQPK+SFTATTYESV GGENRTRTD+RSREDAGMIQIDKLQDKVEDAAGKGGPV
Sbjct: 1  MSGAQGAQPKDSFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKVEDAAGKGGPV 60

Query: 61 FGAGKDDKKQDLGVTGTG 79
          FGAGKDDKKQDLGV+GTG
Sbjct: 61 FGAGKDDKKQDLGVSGTG 78

[Close]

BLAST of CSPI04G16280 vs. ExPASy TrEMBL
Match: A0A6J1ITS5 (uncharacterized protein LOC111478345 OS=Cucurbita maxima OX=3661 GN=LOC111478345 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.2e-31
Identity = 73/78 (93.59%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MSGAQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPV 60
          MSGAQGAQPK+SFTATTYESV GGENRTRTD+RSREDAGMIQIDKLQDKVEDAAGKGGPV
Sbjct: 1  MSGAQGAQPKDSFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKVEDAAGKGGPV 60

Query: 61 FGAGKDDKKQDLGVTGTG 79
          FGAGKD+KKQDLGV+GTG
Sbjct: 61 FGAGKDEKKQDLGVSGTG 78

[Close]

BLAST of CSPI04G16280 vs. NCBI nr
Match: XP_011653711.1 (uncharacterized protein LOC101209719 [Cucumis sativus])

HSP 1 Score: 151.4 bits (381), Expect = 3.3e-33
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MSGAQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPV 60
          MSGAQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDK+QDKVEDAAGKGGPV
Sbjct: 1  MSGAQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDKIQDKVEDAAGKGGPV 60

Query: 61 FGAGKDDKKQDLGVTGTG 79
          FGAGKDDKKQDLGVTGTG
Sbjct: 61 FGAGKDDKKQDLGVTGTG 78

[Close]

BLAST of CSPI04G16280 vs. NCBI nr
Match: XP_008464243.1 (PREDICTED: uncharacterized protein LOC103502173 [Cucumis melo] >KAA0063729.1 uncharacterized protein E6C27_scaffold1290G00100 [Cucumis melo var. makuwa] >TYJ97777.1 uncharacterized protein E5676_scaffold67599G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 150.6 bits (379), Expect = 5.7e-33
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MSGAQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPV 60
          MSGAQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPV
Sbjct: 1  MSGAQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPV 60

Query: 61 FGAGKDDKKQDLGVTGTG 79
          FGAGK+DKKQDLGVTGTG
Sbjct: 61 FGAGKEDKKQDLGVTGTG 78

[Close]

BLAST of CSPI04G16280 vs. NCBI nr
Match: XP_038883613.1 (uncharacterized protein LOC120074530 [Benincasa hispida])

HSP 1 Score: 147.1 bits (370), Expect = 6.3e-32
Identity = 74/78 (94.87%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MSGAQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPV 60
          MSGAQGAQPKESFTATTYESV GGENRT+TD+RSREDAGMIQIDKLQDKV+DAAGKGGPV
Sbjct: 1  MSGAQGAQPKESFTATTYESVPGGENRTKTDLRSREDAGMIQIDKLQDKVQDAAGKGGPV 60

Query: 61 FGAGKDDKKQDLGVTGTG 79
          FGAGKDDKKQDLGVTGTG
Sbjct: 61 FGAGKDDKKQDLGVTGTG 78

[Close]

BLAST of CSPI04G16280 vs. NCBI nr
Match: XP_023544782.1 (uncharacterized protein LOC111804271 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 146.7 bits (369), Expect = 8.2e-32
Identity = 74/78 (94.87%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MSGAQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPV 60
          MSGAQGAQPK+SFTATTYESV GGENRTRTD+RSREDAGMIQIDKLQDKVEDAAGKGGPV
Sbjct: 1  MSGAQGAQPKDSFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKVEDAAGKGGPV 60

Query: 61 FGAGKDDKKQDLGVTGTG 79
          FGAGKDDKKQDLGV+GTG
Sbjct: 61 FGAGKDDKKQDLGVSGTG 78

[Close]

BLAST of CSPI04G16280 vs. NCBI nr
Match: XP_022949816.1 (uncharacterized protein LOC111453100 [Cucurbita moschata])

HSP 1 Score: 146.7 bits (369), Expect = 8.2e-32
Identity = 74/78 (94.87%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MSGAQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPV 60
          MSGAQGAQPK+SFTATTYESV GGENRTRTD+RSREDAGMIQIDKLQDKVEDAAGKGGPV
Sbjct: 1  MSGAQGAQPKDSFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKVEDAAGKGGPV 60

Query: 61 FGAGKDDKKQDLGVTGTG 79
          FGAGKDDKKQDLGV+GTG
Sbjct: 61 FGAGKDDKKQDLGVSGTG 78

[Close]

BLAST of CSPI04G16280 vs. TAIR 10
Match: AT2G21820.1 (unknown protein; Has 45 Blast hits to 45 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 125.6 bits (314), Expect = 1.8e-29
Identity = 63/78 (80.77%), Postives = 70/78 (89.74%), Query Frame = 0


Query: 1  MSGAQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPV 60
          MSGAQGA+P +S TATTYESV GG+N+T+ DIRS+ED G IQ+DKLQDKV DAAG GGPV
Sbjct: 1  MSGAQGAEPMDSRTATTYESVEGGQNKTKLDIRSKEDEGGIQVDKLQDKVSDAAGLGGPV 60

Query: 61 FGAGKDDKKQDLGVTGTG 79
          FGAGKDDKKQDLGVTGTG
Sbjct: 61 FGAGKDDKKQDLGVTGTG 78

The following BLAST results are available for this feature:

BLAST of CSPI04G16280 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI04G16280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KY41	1.6e-33	98.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G314500 PE=4 SV=1	[more]
A0A5D3BF74	2.8e-33	98.72	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CL14	2.8e-33	98.72	uncharacterized protein LOC103502173 OS=Cucumis melo OX=3656 GN=LOC103502173 PE=...	[more]
A0A6J1GD40	4.0e-32	94.87	uncharacterized protein LOC111453100 OS=Cucurbita moschata OX=3662 GN=LOC1114531...	[more]
A0A6J1ITS5	1.2e-31	93.59	uncharacterized protein LOC111478345 OS=Cucurbita maxima OX=3661 GN=LOC111478345...	[more]

BLAST of CSPI04G16280 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011653711.1	3.3e-33	98.72	uncharacterized protein LOC101209719 [Cucumis sativus]	[more]
XP_008464243.1	5.7e-33	98.72	PREDICTED: uncharacterized protein LOC103502173 [Cucumis melo] >KAA0063729.1 unc...	[more]
XP_038883613.1	6.3e-32	94.87	uncharacterized protein LOC120074530 [Benincasa hispida]	[more]
XP_023544782.1	8.2e-32	94.87	uncharacterized protein LOC111804271 [Cucurbita pepo subsp. pepo]	[more]
XP_022949816.1	8.2e-32	94.87	uncharacterized protein LOC111453100 [Cucurbita moschata]	[more]

BLAST of CSPI04G16280 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21820.1	1.8e-29	80.77	unknown protein; Has 45 Blast hits to 45 proteins in 13 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..78
None	No IPR available	PANTHER	PTHR36012:SF2	OS01G0654400 PROTEIN	coord: 1..78
None	No IPR available	PANTHER	PTHR36012	OS01G0654400 PROTEIN	coord: 1..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G16280.1	CSPI04G16280.1	mRNA