CSPI04G16200 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI04G16200
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr4: 13498262 .. 13499111 (+)
RNA-Seq ExpressionCSPI04G16200
SyntenyCSPI04G16200
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAATGGAATTTGGGCGATGCTTTCCAGATGATGAAGGTAACCTACTTGTTCCCCAAGCTATTATCTCCGTGTGTATTTTTGTATGACAAATAATAATTAAAACCAAAAAAAAGTTAGTAATGTATCGGATGGGTCTTACGCGTGGGGCCCATCCGCACGTATGGTGTGTGCCATGTTACGAGTCATGAGTGGAGGTGGTGGGTCAGGGGGGCCAAAAGGTCACCTTTTTTTAATTAATGTAAAAAAGAAACCTCCCTTTTTTTATTTGTTTAAATTAATTAATTAAGGACAGTGATTTCAATGTTGAAAATACCTTAAATGCCCCCCCCCCCCTTCACCCAGTCTTTGTCAACCACAGCACCCAAAGTGTTTGTTTTTTTCTTCTTTTCTTTCTCTTTTTCCTCCCTTCACGCTTTCACTTCTAATACAACTTTTTACACACACACACACATATAAAACAAAAATACGCGTTTTCAGATTATTATACTCACTGGATTATAATTAATTGTTGGTTATTATATTCTGTCTTTGAATGCAAACTATATTACCATCTAGTTTATAACATAGGTTGATGTTTGGGAAAATGTTGATAAAAATATAGAATGATGTATCACTGTCTAGAGATATTTTTGGATAGTTGTTTCCTGGCCGTAGGTCTCATGTTCCAAGGACTATCTTATTCCACTTATATGAGTTGTTTTTCCTTTTTCTCTCTTCTTAGCGCTCATATTCAGTCGCAAAGCATTGTGCCGTAGAAGGATATTTTCTTTGTCTATTATATACACTCGCAAAGCTTCCTTACAGAGGACTCCTATGTCTATTTGTGCTCCCTTCGGAGGAGTTTGA

mRNA sequence

ATGGAAATGGAATTTGGGCGATGCTTTCCAGATGATGAAGCGCTCATATTCAGTCGCAAAGCATTGTGCCGTAGAAGGATATTTTCTTTGTCTATTATATACACTCGCAAAGCTTCCTTACAGAGGACTCCTATGTCTATTTGTGCTCCCTTCGGAGGAGTTTGA

Coding sequence (CDS)

ATGGAAATGGAATTTGGGCGATGCTTTCCAGATGATGAAGCGCTCATATTCAGTCGCAAAGCATTGTGCCGTAGAAGGATATTTTCTTTGTCTATTATATACACTCGCAAAGCTTCCTTACAGAGGACTCCTATGTCTATTTGTGCTCCCTTCGGAGGAGTTTGA

Protein sequence

MEMEFGRCFPDDEALIFSRKALCRRRIFSLSIIYTRKASLQRTPMSICAPFGGV*
Homology
[Close]
BLAST of CSPI04G16200 vs. ExPASy TrEMBL
Match: A0A0A0L1F0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G314400 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 5.8e-22
Identity = 53/54 (98.15%), Postives = 53/54 (98.15%), Query Frame = 0 

Query: 1  MEMEFGRCFPDDEALIFSRKALCRRRIFSLSIIYTRKASLQRTPMSICAPFGGV 55
          MEMEFGRCFPDDE LIFSRKALCRRRIFSLSIIYTRKASLQRTPMSICAPFGGV
Sbjct: 1  MEMEFGRCFPDDEVLIFSRKALCRRRIFSLSIIYTRKASLQRTPMSICAPFGGV 54

[Close]
BLAST of CSPI04G16200 vs. NCBI nr
Match: KGN54412.1 (hypothetical protein Csa_021555 [Cucumis sativus])

HSP 1 Score: 112.5 bits (280), Expect = 1.2e-21
Identity = 53/54 (98.15%), Postives = 53/54 (98.15%), Query Frame = 0 

Query: 1  MEMEFGRCFPDDEALIFSRKALCRRRIFSLSIIYTRKASLQRTPMSICAPFGGV 55
          MEMEFGRCFPDDE LIFSRKALCRRRIFSLSIIYTRKASLQRTPMSICAPFGGV
Sbjct: 1  MEMEFGRCFPDDEVLIFSRKALCRRRIFSLSIIYTRKASLQRTPMSICAPFGGV 54

The following BLAST results are available for this feature:
BLAST of CSPI04G16200 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI04G16200 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L1F05.8e-2298.15Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G314400 PE=4 SV=1[more]
BLAST of CSPI04G16200 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54412.11.2e-2198.15hypothetical protein Csa_021555 [Cucumis sativus][more]
BLAST of CSPI04G16200 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G16200.1CSPI04G16200.1mRNA