Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGCGGTTGAGTTCGGCTCGATCTGGCGGAACGGAGAGGAGAAGAAAAGATGGAGATGACCGGCGGCGGTTGCTGCGCGAACGGAGAGAAGGGATGGGATGGGCTGCGGCGGGAAGAAAACGGAAGAGAAAGACGGTTGGCTGTGGCTGGGCTGCGGCGGGAAGGAAACGGAAGGGAAGGGAGAAGGAGACGGTGGAGTCGTCGCGGCGTACGGGAGGAAGGAGAAGAGGCGCGGCGGTTGCGGCTGGGGAGAAGGGGAAGGACGCACGGGGAGGAAGAAGGAAATAG mRNA sequence
ATGTTGCGGTTGAGTTCGGCTCGATCTGGCGGAACGGAGAGGAGAAGAAAAGATGGAGATGACCGGCGGCGGTTGCTGCGCGAACGGAGAGAAGGGATGGGATGGGCTGCGGCGGGAAGAAAACGGAAGAGAAAGACGGTTGGCTGTGGCTGGGCTGCGGCGGGAAGGAAACGGAAGGGAAGGGAGAAGGAGACGGTGGAGTCGTCGCGGCGTACGGGAGGAAGGAGAAGAGGCGCGGCGGTTGCGGCTGGGGAGAAGGGGAAGGACGCACGGGGAGGAAGAAGGAAATAG Coding sequence (CDS)
ATGTTGCGGTTGAGTTCGGCTCGATCTGGCGGAACGGAGAGGAGAAGAAAAGATGGAGATGACCGGCGGCGGTTGCTGCGCGAACGGAGAGAAGGGATGGGATGGGCTGCGGCGGGAAGAAAACGGAAGAGAAAGACGGTTGGCTGTGGCTGGGCTGCGGCGGGAAGGAAACGGAAGGGAAGGGAGAAGGAGACGGTGGAGTCGTCGCGGCGTACGGGAGGAAGGAGAAGAGGCGCGGCGGTTGCGGCTGGGGAGAAGGGGAAGGACGCACGGGGAGGAAGAAGGAAATAG Protein sequence
MLRLSSARSGGTERRRKDGDDRRRLLRERREGMGWAAAGRKRKRKTVGCGWAAAGRKRKGREKETVESSRRTGGRRRGAAVAAGEKGKDARGGRRK*
Homology
BLAST of CSPI04G16170 vs. ExPASy TrEMBL
Match:
A0A0A0KE93 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G051530 PE=4 SV=1)
HSP 1 Score: 62.4 bits (150), Expect = 1.2e-06
Identity = 43/63 (68.25%), Postives = 48/63 (76.19%), Query Frame = 0
Query: 34 GWAAAGRKRKRKTVGCGWAAAGRKRKGREKETVESSRRTGGRRRGAAVAAGEKGKDARGG 93 G A RK +RK G A KR+G+EKETVESS+RT GRRRGAAVAAGEKGK+ARGG Sbjct: 19 GAAGLRRKERRK----GTAEGKEKREGKEKETVESSQRTRGRRRGAAVAAGEKGKEARGG 77 Query: 94 RRK 97 RRK Sbjct: 79 RRK 77
The following BLAST results are available for this feature:
Match Name E-value Identity Description
Match Name E-value Identity Description
A0A0A0KE93 1.2e-06 68.25 Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G051530 PE=4 SV=1 [more]
Match Name E-value Identity Description
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
A T G T T G C G G T T G A G T T C G G C T C G A T C T G G C G G A A C G G A G A G G A G A A G A A A A G A T G G A G A T G A C C G G C G G C G G T T G C T G C G C G A A C G G A G A G A A G G G A T G G G A T G G G C T G C G G C G G G A A G A A A A C G G A A G A G A A A G A C G G T T G G C T G T G G C T G G G C T G C G G C G G G A A G G A A A C G G A A G G G A A G G G A G A A G G A G A C G G T G G A G T C G T C G C G G C G T A C G G G A G G A A G G A G A A G A G G C G C G G C G G T T G C G G C T G G G G A G A A G G G G A A G G A C G C A C G G G G A G G A A G A A G G A A A T A G 50 100 150 200 250 Score = Score = Score = Score = Sequence mobidb-lite mobidb-lite mobidb-lite mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 1..96
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 9..38
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 81..96
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 55..74
Relationships
The following mRNA feature(s) are a part of this gene: