CSPI04G16040 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G16040
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	BHLH domain-containing protein
Location	Chr4: 13377441 .. 13378130 (-)
RNA-Seq Expression	CSPI04G16040
Synteny	CSPI04G16040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAGAAGATCTAATACAAAAATAAATAATAAAATTAAAAACCTACCCCTCATTTCCATGTACCCAAAATTTGAATCTCACTTTGTTTCTCTCTAATGGATTACAACTTTCCGGCGAGCAACCCCAGTTCATGTGGTTCATCCTCCGGCGGCGGCGGGGGCGGTGGAAAAGAGAAGATGAAAAAGAACAACAACAACCACGGCGGAGCCGGGAAGAGGAGCAAAGGGGTTGTGAAGCTATCGACGGACCCGCAAAGCGTGGCGGCGAGAGAACGGCGGCATAGAATCAGCGACCGGTTCAAGATTTTGCAGAGCTTGGTTCCCGGCGGCACTAAAATGGACACCGTCTCAATGCTTGATGAAGCCATTCATTATGTCAAGTTCTTGAAAACCCAGATTTGGCTTCATCAAACCATGATTAATTTCGTTGATTATGATTCTAATTCTTCCGCGGCCGTCTCCGCAGCCGCTACTGCCAATTCCGGTTTCCCTTTTGAACAAATTGCCAGCGGCGAGTATAACAACATGAATAATCTTCTCTACCCTCAAAACGACGTGGTTAAAATGGAAGAGCCTAATTTCTTGCCTCAGCTTGATCCCAATAATAATAATAATGTTTATTTTCCTTCTGATCATCAAGATCAATTCATCTCCTCTTCTTATGATCCTTACATCAACTTCTAGTTTTCTTT

mRNA sequence

ACAGAAGATCTAATACAAAAATAAATAATAAAATTAAAAACCTACCCCTCATTTCCATGTACCCAAAATTTGAATCTCACTTTGTTTCTCTCTAATGGATTACAACTTTCCGGCGAGCAACCCCAGTTCATGTGGTTCATCCTCCGGCGGCGGCGGGGGCGGTGGAAAAGAGAAGATGAAAAAGAACAACAACAACCACGGCGGAGCCGGGAAGAGGAGCAAAGGGGTTGTGAAGCTATCGACGGACCCGCAAAGCGTGGCGGCGAGAGAACGGCGGCATAGAATCAGCGACCGGTTCAAGATTTTGCAGAGCTTGGTTCCCGGCGGCACTAAAATGGACACCGTCTCAATGCTTGATGAAGCCATTCATTATGTCAAGTTCTTGAAAACCCAGATTTGGCTTCATCAAACCATGATTAATTTCGTTGATTATGATTCTAATTCTTCCGCGGCCGTCTCCGCAGCCGCTACTGCCAATTCCGGTTTCCCTTTTGAACAAATTGCCAGCGGCGAGTATAACAACATGAATAATCTTCTCTACCCTCAAAACGACGTGGTTAAAATGGAAGAGCCTAATTTCTTGCCTCAGCTTGATCCCAATAATAATAATAATGTTTATTTTCCTTCTGATCATCAAGATCAATTCATCTCCTCTTCTTATGATCCTTACATCAACTTCTAGTTTTCTTT

Coding sequence (CDS)

ATGGATTACAACTTTCCGGCGAGCAACCCCAGTTCATGTGGTTCATCCTCCGGCGGCGGCGGGGGCGGTGGAAAAGAGAAGATGAAAAAGAACAACAACAACCACGGCGGAGCCGGGAAGAGGAGCAAAGGGGTTGTGAAGCTATCGACGGACCCGCAAAGCGTGGCGGCGAGAGAACGGCGGCATAGAATCAGCGACCGGTTCAAGATTTTGCAGAGCTTGGTTCCCGGCGGCACTAAAATGGACACCGTCTCAATGCTTGATGAAGCCATTCATTATGTCAAGTTCTTGAAAACCCAGATTTGGCTTCATCAAACCATGATTAATTTCGTTGATTATGATTCTAATTCTTCCGCGGCCGTCTCCGCAGCCGCTACTGCCAATTCCGGTTTCCCTTTTGAACAAATTGCCAGCGGCGAGTATAACAACATGAATAATCTTCTCTACCCTCAAAACGACGTGGTTAAAATGGAAGAGCCTAATTTCTTGCCTCAGCTTGATCCCAATAATAATAATAATGTTTATTTTCCTTCTGATCATCAAGATCAATTCATCTCCTCTTCTTATGATCCTTACATCAACTTCTAG

Protein sequence

MDYNFPASNPSSCGSSSGGGGGGGKEKMKKNNNNHGGAGKRSKGVVKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDSNSSAAVSAAATANSGFPFEQIASGEYNNMNNLLYPQNDVVKMEEPNFLPQLDPNNNNNVYFPSDHQDQFISSSYDPYINF*

Homology

[Close]

BLAST of CSPI04G16040 vs. ExPASy Swiss-Prot
Match: Q9M041 (Transcription factor bHLH140 OS=Arabidopsis thaliana OX=3702 GN=BHLH140 PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 9.2e-27
Identity = 70/125 (56.00%), Postives = 85/125 (68.00%), Query Frame = 0


Query: 2   DYNFPASNPSSCGSSSGGGGGGGKEKMKKNNNNHGGAGKRSKGVVKLSTDPQSVAARERR 61
           D+N  + NP+S  ++S       + K +  N       KRS+    LSTDPQSVAAR+RR
Sbjct: 3   DFNLRSENPNSSSTTSSSSSSFHRHKSETGNT------KRSRSTSTLSTDPQSVAARDRR 62

Query: 62  HRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFV-DYDSNSSAA 121
           HRISDRFKILQS+VPGG KMDTVSMLDEAI YVKFLK QIW HQ M+ F+ D+++ SS  
Sbjct: 63  HRISDRFKILQSMVPGGAKMDTVSMLDEAISYVKFLKAQIWYHQNMLLFINDHETTSSCT 121

Query: 122 VSAAA 126
            S  A
Sbjct: 123 YSPGA 121

[Close]

BLAST of CSPI04G16040 vs. ExPASy Swiss-Prot
Match: Q7XAQ6 (Transcription factor LAX PANICLE 1 OS=Oryza sativa subsp. japonica OX=39947 GN=LAX1 PE=1 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 3.1e-22
Identity = 63/105 (60.00%), Postives = 77/105 (73.33%), Query Frame = 0


Query: 21  GGGGKEKMKKNNNNHGGAGKRSKGVVKLSTDPQSVAARERRHRISDRFKILQSLVPGGTK 80
           GG G+ +M+       G G+R  G  KLSTDPQSVAARERRHRISDRF++L+SLVPGG+K
Sbjct: 21  GGLGEGRMR-------GGGRRRPG-AKLSTDPQSVAARERRHRISDRFRVLRSLVPGGSK 80

Query: 81  MDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDSNSSAAVSAAA 126
           MDTVSML++AIHYVKFLK Q+ LHQ  +  V ++     A  AAA
Sbjct: 81  MDTVSMLEQAIHYVKFLKAQVTLHQAAL--VQHEEGCQHADVAAA 115

[Close]

BLAST of CSPI04G16040 vs. ExPASy Swiss-Prot
Match: Q9FHA7 (Transcription factor HEC1 OS=Arabidopsis thaliana OX=3702 GN=HEC1 PE=1 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.3e-17
Identity = 44/56 (78.57%), Postives = 49/56 (87.50%), Query Frame = 0


Query: 46  VKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQI 102
           V++S DPQSVAAR RR RIS+R +ILQ LVPGGTKMDT SMLDEAIHYVKFLK Q+
Sbjct: 126 VRISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQV 181

[Close]

BLAST of CSPI04G16040 vs. ExPASy Swiss-Prot
Match: Q9SND4 (Transcription factor HEC2 OS=Arabidopsis thaliana OX=3702 GN=HEC2 PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.7e-17
Identity = 49/84 (58.33%), Postives = 59/84 (70.24%), Query Frame = 0


Query: 46  VKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQ 105
           V++S DPQSVAAR RR RIS+R +ILQ LVPGGTKMDT SMLDEAIHYVKFLK Q+   Q
Sbjct: 123 VRISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQV---Q 182

Query: 106 TMINFVDYDSNSSAAVSAAATANS 130
           ++      +     AV+  A A +
Sbjct: 183 SLEEHAVVNGGGMTAVAGGALAGT 203

[Close]

BLAST of CSPI04G16040 vs. ExPASy Swiss-Prot
Match: Q9LXD8 (Transcription factor HEC3 OS=Arabidopsis thaliana OX=3702 GN=HEC3 PE=1 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 6.6e-17
Identity = 45/58 (77.59%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 46  VKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWL 104
           V++S DPQSVAAR RR RIS+R +ILQ LVPGGTKMDT SMLDEAI YVKFLK QI L
Sbjct: 123 VRISDDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRL 180

[Close]

BLAST of CSPI04G16040 vs. ExPASy TrEMBL
Match: A0A0A0KXM0 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G312280 PE=4 SV=1)

HSP 1 Score: 384.4 bits (986), Expect = 2.8e-103
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0


Query: 1   MDYNFPASNPSSCGSSSGGGGGGGKEKMKKNNNNHGGAGKRSKGVVKLSTDPQSVAARER 60
           MDYNFPASNPSSCGSSSGGGGGGGKEKMKKNNNNHGGAGKRSKGVVKLSTDPQSVAARER
Sbjct: 1   MDYNFPASNPSSCGSSSGGGGGGGKEKMKKNNNNHGGAGKRSKGVVKLSTDPQSVAARER 60

Query: 61  RHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDSNSSAA 120
           RHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDSNSSAA
Sbjct: 61  RHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDSNSSAA 120

Query: 121 VSAAATANSGFPFEQIASGEYNNMNNLLYPQNDVVKMEEPNFLPQLDPNNNNNVYFPSDH 180
           VSAAATANSGFPFEQIASGEYNNMNNLLYPQNDVVKMEEPNFLPQLDPNNNNNVYFPSDH
Sbjct: 121 VSAAATANSGFPFEQIASGEYNNMNNLLYPQNDVVKMEEPNFLPQLDPNNNNNVYFPSDH 180

Query: 181 QDQFISSSYDPYINF 196
           QDQFISSSYDPYINF
Sbjct: 181 QDQFISSSYDPYINF 195

[Close]

BLAST of CSPI04G16040 vs. ExPASy TrEMBL
Match: A0A5A7T6E1 (HLH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold141G00320 PE=4 SV=1)

HSP 1 Score: 371.7 bits (953), Expect = 1.9e-99
Identity = 193/196 (98.47%), Postives = 193/196 (98.47%), Query Frame = 0


Query: 1   MDYNFPASNPSSCGSSSGGGGGGGKEKMKK-NNNNHGGAGKRSKGVVKLSTDPQSVAARE 60
           MDYNFPASNPSSCGSSS  GGGGGKEKMKK NNNNHGGAGKRSKGVVKLSTDPQSVAARE
Sbjct: 1   MDYNFPASNPSSCGSSS--GGGGGKEKMKKNNNNNHGGAGKRSKGVVKLSTDPQSVAARE 60

Query: 61  RRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDSNSSA 120
           RRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDSNSSA
Sbjct: 61  RRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDSNSSA 120

Query: 121 AVSAAATANSGFPFEQIASGEYNNMNNLLYPQNDVVKMEEPNFLPQLDPNNNNNVYFPSD 180
           AVSAAATANSGFPFEQIASGEYNNMNNLLYPQNDVVKMEEPNFLPQLDPNNNNNVYFPSD
Sbjct: 121 AVSAAATANSGFPFEQIASGEYNNMNNLLYPQNDVVKMEEPNFLPQLDPNNNNNVYFPSD 180

Query: 181 HQDQFISSSYDPYINF 196
           HQDQFISSSYDPYINF
Sbjct: 181 HQDQFISSSYDPYINF 194

[Close]

BLAST of CSPI04G16040 vs. ExPASy TrEMBL
Match: A0A5D3CHB0 (HLH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold107G00040 PE=4 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 7.9e-98
Identity = 191/196 (97.45%), Postives = 191/196 (97.45%), Query Frame = 0


Query: 1   MDYNFPASNPSSCGSSSGGGGGGGKEKMKK-NNNNHGGAGKRSKGVVKLSTDPQSVAARE 60
           MDYNFPASNPSSCGSSS  GGGGGKEKMKK NNNNHGGAGKRSKGVVKLSTDPQSVAARE
Sbjct: 1   MDYNFPASNPSSCGSSS--GGGGGKEKMKKNNNNNHGGAGKRSKGVVKLSTDPQSVAARE 60

Query: 61  RRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDSNSSA 120
           RRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDSNSSA
Sbjct: 61  RRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDSNSSA 120

Query: 121 AVSAAATANSGFPFEQIASGEYNNMNNLLYPQNDVVKMEEPNFLPQLDPNNNNNVYFPSD 180
           AVSAAATANSGFPFEQIASGEYNNMNNLLYPQNDVVKMEEPNFLPQLDPNNNNNVYFPSD
Sbjct: 121 AVSAAATANSGFPFEQIASGEYNNMNNLLYPQNDVVKMEEPNFLPQLDPNNNNNVYFPSD 180

Query: 181 HQDQFISSSYDPYINF 196
           HQDQFISSSYDPY  F
Sbjct: 181 HQDQFISSSYDPYXFF 194

[Close]

BLAST of CSPI04G16040 vs. ExPASy TrEMBL
Match: A0A6J1EVF6 (transcription factor bHLH140 OS=Cucurbita moschata OX=3662 GN=LOC111438152 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 8.5e-68
Identity = 153/200 (76.50%), Postives = 168/200 (84.00%), Query Frame = 0


Query: 1   MDYNFPASNPSSCGSSSGGG--GGGGKEKMKKNNNNHGGAGKRSKGVVKLSTDPQSVAAR 60
           MDY FPASNPSSCGSSSGG   G   KEK+KKN++   G GKRSKGVVKLSTDPQSVAAR
Sbjct: 1   MDYTFPASNPSSCGSSSGGATTGATRKEKLKKNSSGSCG-GKRSKGVVKLSTDPQSVAAR 60

Query: 61  ERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDSNSS 120
           ERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYD +SS
Sbjct: 61  ERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYD-DSS 120

Query: 121 AAVSAAATANSGFPFEQIASGEY--NNMNNLLYPQNDVVKMEE-PNFLPQLDPNNNNNVY 180
            + +AAA  N GF F+QIA GE+  N+ N+ +Y QNDVVKMEE PN LPQLDP   NN+Y
Sbjct: 121 NSTAAAAAVNCGFHFDQIAGGEFHNNDTNSFVYSQNDVVKMEEPPNLLPQLDP---NNLY 180

Query: 181 FPSDHQDQFISSSYDPYINF 196
           FPS  QDQ++ SSYDPY+NF
Sbjct: 181 FPSG-QDQYMCSSYDPYMNF 194

[Close]

BLAST of CSPI04G16040 vs. ExPASy TrEMBL
Match: A0A6J1HPK4 (transcription factor LAX PANICLE 1-like OS=Cucurbita maxima OX=3661 GN=LOC111466180 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 4.2e-67
Identity = 156/202 (77.23%), Postives = 169/202 (83.66%), Query Frame = 0


Query: 1   MDYNFPASNPSSCGSSSGGG--GGGGKEKMKKNNNNHGGAGKRSKGVVKLSTDPQSVAAR 60
           MDYNFPASNPSSCGSSSGG       KEK+KKN++   G GKRSKGVVKLSTDPQSVAAR
Sbjct: 1   MDYNFPASNPSSCGSSSGGATTEATRKEKLKKNSSGSCG-GKRSKGVVKLSTDPQSVAAR 60

Query: 61  ERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYD--SN 120
           ERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYD  SN
Sbjct: 61  ERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDSSN 120

Query: 121 SSAAVSAAATANSGFPFEQIASGEY--NNMNNLLYPQNDVVKMEE-PNFLPQLDPNNNNN 180
           S+AAV+AAA  N GF F QIA GE+  N+ N+ +Y QNDVVKMEE PN LPQLDP   NN
Sbjct: 121 STAAVTAAA-VNCGFHFNQIAGGEFHNNDTNSFVYSQNDVVKMEEPPNLLPQLDP---NN 180

Query: 181 VYFPSDHQDQFISSSYDPYINF 196
           +YFPS  QDQ++ SSYD Y+NF
Sbjct: 181 LYFPSG-QDQYMCSSYDAYMNF 196

[Close]

BLAST of CSPI04G16040 vs. NCBI nr
Match: XP_031739731.1 (transcription factor bHLH140 [Cucumis sativus] >KGN54395.1 hypothetical protein Csa_018056 [Cucumis sativus])

HSP 1 Score: 384.4 bits (986), Expect = 5.8e-103
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0


Query: 1   MDYNFPASNPSSCGSSSGGGGGGGKEKMKKNNNNHGGAGKRSKGVVKLSTDPQSVAARER 60
           MDYNFPASNPSSCGSSSGGGGGGGKEKMKKNNNNHGGAGKRSKGVVKLSTDPQSVAARER
Sbjct: 1   MDYNFPASNPSSCGSSSGGGGGGGKEKMKKNNNNHGGAGKRSKGVVKLSTDPQSVAARER 60

Query: 61  RHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDSNSSAA 120
           RHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDSNSSAA
Sbjct: 61  RHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDSNSSAA 120

Query: 121 VSAAATANSGFPFEQIASGEYNNMNNLLYPQNDVVKMEEPNFLPQLDPNNNNNVYFPSDH 180
           VSAAATANSGFPFEQIASGEYNNMNNLLYPQNDVVKMEEPNFLPQLDPNNNNNVYFPSDH
Sbjct: 121 VSAAATANSGFPFEQIASGEYNNMNNLLYPQNDVVKMEEPNFLPQLDPNNNNNVYFPSDH 180

Query: 181 QDQFISSSYDPYINF 196
           QDQFISSSYDPYINF
Sbjct: 181 QDQFISSSYDPYINF 195

[Close]

BLAST of CSPI04G16040 vs. NCBI nr
Match: KAA0037736.1 (HLH domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 371.7 bits (953), Expect = 3.9e-99
Identity = 193/196 (98.47%), Postives = 193/196 (98.47%), Query Frame = 0


Query: 1   MDYNFPASNPSSCGSSSGGGGGGGKEKMKK-NNNNHGGAGKRSKGVVKLSTDPQSVAARE 60
           MDYNFPASNPSSCGSSS  GGGGGKEKMKK NNNNHGGAGKRSKGVVKLSTDPQSVAARE
Sbjct: 1   MDYNFPASNPSSCGSSS--GGGGGKEKMKKNNNNNHGGAGKRSKGVVKLSTDPQSVAARE 60

Query: 61  RRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDSNSSA 120
           RRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDSNSSA
Sbjct: 61  RRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDSNSSA 120

Query: 121 AVSAAATANSGFPFEQIASGEYNNMNNLLYPQNDVVKMEEPNFLPQLDPNNNNNVYFPSD 180
           AVSAAATANSGFPFEQIASGEYNNMNNLLYPQNDVVKMEEPNFLPQLDPNNNNNVYFPSD
Sbjct: 121 AVSAAATANSGFPFEQIASGEYNNMNNLLYPQNDVVKMEEPNFLPQLDPNNNNNVYFPSD 180

Query: 181 HQDQFISSSYDPYINF 196
           HQDQFISSSYDPYINF
Sbjct: 181 HQDQFISSSYDPYINF 194

[Close]

BLAST of CSPI04G16040 vs. NCBI nr
Match: TYK10925.1 (HLH domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 366.3 bits (939), Expect = 1.6e-97
Identity = 191/196 (97.45%), Postives = 191/196 (97.45%), Query Frame = 0


Query: 1   MDYNFPASNPSSCGSSSGGGGGGGKEKMKK-NNNNHGGAGKRSKGVVKLSTDPQSVAARE 60
           MDYNFPASNPSSCGSSS  GGGGGKEKMKK NNNNHGGAGKRSKGVVKLSTDPQSVAARE
Sbjct: 1   MDYNFPASNPSSCGSSS--GGGGGKEKMKKNNNNNHGGAGKRSKGVVKLSTDPQSVAARE 60

Query: 61  RRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDSNSSA 120
           RRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDSNSSA
Sbjct: 61  RRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDSNSSA 120

Query: 121 AVSAAATANSGFPFEQIASGEYNNMNNLLYPQNDVVKMEEPNFLPQLDPNNNNNVYFPSD 180
           AVSAAATANSGFPFEQIASGEYNNMNNLLYPQNDVVKMEEPNFLPQLDPNNNNNVYFPSD
Sbjct: 121 AVSAAATANSGFPFEQIASGEYNNMNNLLYPQNDVVKMEEPNFLPQLDPNNNNNVYFPSD 180

Query: 181 HQDQFISSSYDPYINF 196
           HQDQFISSSYDPY  F
Sbjct: 181 HQDQFISSSYDPYXFF 194

[Close]

BLAST of CSPI04G16040 vs. NCBI nr
Match: XP_038883835.1 (transcription factor LAX PANICLE 1 [Benincasa hispida])

HSP 1 Score: 315.1 bits (806), Expect = 4.3e-82
Identity = 170/198 (85.86%), Postives = 175/198 (88.38%), Query Frame = 0


Query: 1   MDYNFPASNPSSCGSSSGGGGGGGKEKMKKNNNNHGGAGKRSKGVVKLSTDPQSVAARER 60
           MDYNFP SNPSSCGSSS   GGGGKEKMKKN NN  G GKRSKGVVKLSTDPQSVAARER
Sbjct: 1   MDYNFPTSNPSSCGSSS---GGGGKEKMKKNINN--GGGKRSKGVVKLSTDPQSVAARER 60

Query: 61  RHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDSNSSAA 120
           RHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYD +S+  
Sbjct: 61  RHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDPSSA-- 120

Query: 121 VSAAATANSGFPFEQIASGEYNNMNNLLYPQNDVVKMEEPNFLPQLDP---NNNNNVYFP 180
            +AAA ANSG PF+QIA GEYNN  N L  QNDVVKMEEPNFLPQLDP   NNNNN+YFP
Sbjct: 121 -TAAAAANSGLPFDQIAGGEYNNNMNFLCSQNDVVKMEEPNFLPQLDPNYNNNNNNLYFP 180

Query: 181 SDHQDQFISSSYDPYINF 196
           SDHQDQFISSSYDPYINF
Sbjct: 181 SDHQDQFISSSYDPYINF 190

[Close]

BLAST of CSPI04G16040 vs. NCBI nr
Match: XP_022931869.1 (transcription factor bHLH140 [Cucurbita moschata])

HSP 1 Score: 266.5 bits (680), Expect = 1.8e-67
Identity = 153/200 (76.50%), Postives = 168/200 (84.00%), Query Frame = 0


Query: 1   MDYNFPASNPSSCGSSSGGG--GGGGKEKMKKNNNNHGGAGKRSKGVVKLSTDPQSVAAR 60
           MDY FPASNPSSCGSSSGG   G   KEK+KKN++   G GKRSKGVVKLSTDPQSVAAR
Sbjct: 1   MDYTFPASNPSSCGSSSGGATTGATRKEKLKKNSSGSCG-GKRSKGVVKLSTDPQSVAAR 60

Query: 61  ERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDSNSS 120
           ERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYD +SS
Sbjct: 61  ERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYD-DSS 120

Query: 121 AAVSAAATANSGFPFEQIASGEY--NNMNNLLYPQNDVVKMEE-PNFLPQLDPNNNNNVY 180
            + +AAA  N GF F+QIA GE+  N+ N+ +Y QNDVVKMEE PN LPQLDP   NN+Y
Sbjct: 121 NSTAAAAAVNCGFHFDQIAGGEFHNNDTNSFVYSQNDVVKMEEPPNLLPQLDP---NNLY 180

Query: 181 FPSDHQDQFISSSYDPYINF 196
           FPS  QDQ++ SSYDPY+NF
Sbjct: 181 FPSG-QDQYMCSSYDPYMNF 194

[Close]

BLAST of CSPI04G16040 vs. TAIR 10
Match: AT5G01310.1 (APRATAXIN-like )

HSP 1 Score: 121.7 bits (304), Expect = 6.5e-28
Identity = 70/125 (56.00%), Postives = 85/125 (68.00%), Query Frame = 0


Query: 2   DYNFPASNPSSCGSSSGGGGGGGKEKMKKNNNNHGGAGKRSKGVVKLSTDPQSVAARERR 61
           D+N  + NP+S  ++S       + K +  N       KRS+    LSTDPQSVAAR+RR
Sbjct: 3   DFNLRSENPNSSSTTSSSSSSFHRHKSETGNT------KRSRSTSTLSTDPQSVAARDRR 62

Query: 62  HRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFV-DYDSNSSAA 121
           HRISDRFKILQS+VPGG KMDTVSMLDEAI YVKFLK QIW HQ M+ F+ D+++ SS  
Sbjct: 63  HRISDRFKILQSMVPGGAKMDTVSMLDEAISYVKFLKAQIWYHQNMLLFINDHETTSSCT 121

Query: 122 VSAAA 126
            S  A
Sbjct: 123 YSPGA 121

[Close]

BLAST of CSPI04G16040 vs. TAIR 10
Match: AT5G67060.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 91.3 bits (225), Expect = 9.5e-19
Identity = 44/56 (78.57%), Postives = 49/56 (87.50%), Query Frame = 0


Query: 46  VKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQI 102
           V++S DPQSVAAR RR RIS+R +ILQ LVPGGTKMDT SMLDEAIHYVKFLK Q+
Sbjct: 126 VRISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQV 181

[Close]

BLAST of CSPI04G16040 vs. TAIR 10
Match: AT3G50330.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 90.9 bits (224), Expect = 1.2e-18
Identity = 49/84 (58.33%), Postives = 59/84 (70.24%), Query Frame = 0


Query: 46  VKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQ 105
           V++S DPQSVAAR RR RIS+R +ILQ LVPGGTKMDT SMLDEAIHYVKFLK Q+   Q
Sbjct: 123 VRISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQV---Q 182

Query: 106 TMINFVDYDSNSSAAVSAAATANS 130
           ++      +     AV+  A A +
Sbjct: 183 SLEEHAVVNGGGMTAVAGGALAGT 203

[Close]

BLAST of CSPI04G16040 vs. TAIR 10
Match: AT5G09750.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 89.0 bits (219), Expect = 4.7e-18
Identity = 45/58 (77.59%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 46  VKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWL 104
           V++S DPQSVAAR RR RIS+R +ILQ LVPGGTKMDT SMLDEAI YVKFLK QI L
Sbjct: 123 VRISDDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRL 180

[Close]

BLAST of CSPI04G16040 vs. TAIR 10
Match: AT3G21330.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 86.7 bits (213), Expect = 2.3e-17
Identity = 48/106 (45.28%), Postives = 71/106 (66.98%), Query Frame = 0


Query: 46  VKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQ 105
           VK+STDPQ+VAAR+RR RIS++ ++LQ+LVPGGTKMDT SMLDEA +Y+KFL+ Q+   +
Sbjct: 273 VKISTDPQTVAARQRRERISEKIRVLQTLVPGGTKMDTASMLDEAANYLKFLRAQV---K 332

Query: 106 TMINFVDYDSNSSAAVSAAATANSGFPFEQIASGEYNNMNNLLYPQ 152
            + N       ++ + S+A T+   FP    +     N N + +P+
Sbjct: 333 ALENLRPKLDQTNLSFSSAPTS---FPLFHPSFLPLQNPNQIHHPE 372

The following BLAST results are available for this feature:

BLAST of CSPI04G16040 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M041	9.2e-27	56.00	Transcription factor bHLH140 OS=Arabidopsis thaliana OX=3702 GN=BHLH140 PE=3 SV=...	[more]
Q7XAQ6	3.1e-22	60.00	Transcription factor LAX PANICLE 1 OS=Oryza sativa subsp. japonica OX=39947 GN=L...	[more]
Q9FHA7	1.3e-17	78.57	Transcription factor HEC1 OS=Arabidopsis thaliana OX=3702 GN=HEC1 PE=1 SV=1	[more]
Q9SND4	1.7e-17	58.33	Transcription factor HEC2 OS=Arabidopsis thaliana OX=3702 GN=HEC2 PE=1 SV=1	[more]
Q9LXD8	6.6e-17	77.59	Transcription factor HEC3 OS=Arabidopsis thaliana OX=3702 GN=HEC3 PE=1 SV=1	[more]

BLAST of CSPI04G16040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXM0	2.8e-103	100.00	BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G312280 PE=4 S...	[more]
A0A5A7T6E1	1.9e-99	98.47	HLH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5D3CHB0	7.9e-98	97.45	HLH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A6J1EVF6	8.5e-68	76.50	transcription factor bHLH140 OS=Cucurbita moschata OX=3662 GN=LOC111438152 PE=4 ...	[more]
A0A6J1HPK4	4.2e-67	77.23	transcription factor LAX PANICLE 1-like OS=Cucurbita maxima OX=3661 GN=LOC111466...	[more]

BLAST of CSPI04G16040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031739731.1	5.8e-103	100.00	transcription factor bHLH140 [Cucumis sativus] >KGN54395.1 hypothetical protein ...	[more]
KAA0037736.1	3.9e-99	98.47	HLH domain-containing protein [Cucumis melo var. makuwa]	[more]
TYK10925.1	1.6e-97	97.45	HLH domain-containing protein [Cucumis melo var. makuwa]	[more]
XP_038883835.1	4.3e-82	85.86	transcription factor LAX PANICLE 1 [Benincasa hispida]	[more]
XP_022931869.1	1.8e-67	76.50	transcription factor bHLH140 [Cucurbita moschata]	[more]

BLAST of CSPI04G16040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01310.1	6.5e-28	56.00	APRATAXIN-like	[more]
AT5G67060.1	9.5e-19	78.57	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G50330.1	1.2e-18	58.33	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G09750.1	4.7e-18	77.59	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G21330.1	2.3e-17	45.28	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 54..103 e-value: 1.6E-12 score: 57.6
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 58..97 e-value: 1.5E-7 score: 31.3
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 48..97 score: 15.357671
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 51..110 e-value: 3.1E-10 score: 42.0
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 53..108
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
None	No IPR available	PANTHER	PTHR45914:SF2	TRANSCRIPTION FACTOR LAX PANICLE 1	coord: 32..146
None	No IPR available	PANTHER	PTHR45914	TRANSCRIPTION FACTOR HEC3-RELATED	coord: 32..146
None	No IPR available	CDD	cd11454	bHLH_AtIND_like	coord: 49..108 e-value: 1.89146E-41 score: 132.516

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G16040.1	CSPI04G16040.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity