CSPI04G15480 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G15480
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	signal recognition particle 19 kDa protein
Location	Chr4: 12855920 .. 12858511 (-)
RNA-Seq Expression	CSPI04G15480
Synteny	CSPI04G15480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGGGCTACCCCATTTGAATCATCTTTTCATCTTTGCCTTTTCTAATTCTCTCGGCATATTTTTTCCGTGGTTTGATTCCAACCCTCCATGTGACGAGTGCTTGGAACAAACTAAATTATATCTAAAGTTTGGCAGCATCTCCTCTCAAATATGGGTTAGAAATTTTCACTTCTATATATCTCTGCTGTAAGCTAAGTTTAGCAAATGTGGGTTCTGGCTTAGACAAGTGATATTTGTTTTGATCACGTTATTACAACAGTTACTGAGGTACGTTGCTTTCTTAGTCTATATATTATCGAAGTTAGCTCTTCCATTAACCAATTTGATCAAGAACTCAAATCTGTGTGAACTAAAGTGTGTGAACAAAGTCTTTAGGGACTGAAAAGATGACTTATTGCAACACCTAATTTAACACAATCCTAATATCTGAATCAATATTCATGTATTTTCTTTAGCTGACAAATAATTCATATGTAAAGTGGGGATTTAAAACTTTAAGTGAAAAGGGTTATTGAATGATTTTAGAATTAAACCAGCAAAAATCAAAATATGTTGTGATAACTAGAGCACAATCTACCTAACTAAGAATCGCTAGTTTCACAACATAACATATTTTGATTCTATAAAAAACACAATAAAGTACAATTTACAAACACTAAAAAGAAATATTTCAAATATAACCAAATGAATCAAAATGTTTATTGAATATCGAAGTTAAAAGATATATGTAATAGTATATATTGTTTCATCGTATCAATATTTTTATATTTATAAATATTTTAAAAAATTTATCGTTAAACTAAGAATGGATAACAAATTTTAAAGTATGAAAGACTTAAACCATATTATTTTACTAATCAAAGGATTTAGTTGGTTTGTGGTTTTTATTGGCAATCAACTCGGACCGGCCAAATTTATTACTTTCAGGTTCACGGTTCAACCCCACCTTCATCTTACTCTTCCAAGTCTTCCATCTCCGTCGTCTCGTCTGTCCGACATCCGGTTTCAGTCTCTCTGATCGTCACGGTTTCAGCTGTTCTTCATTCTGTGAGGCACGCAAATCTTAAACTTTTGTTTTGATCTGTTTGACGAATTTGTATATTATAAATATTTTTCCTTTAGGGTTATTGCGATGTTTTTGTTTGTTTGAAGTATGTAATCGATATCATTATGAATTATGATGTTGTTGTAGACAGAGTTAAGTATTTTACACTCTTATCTGAGGGGTTGTTAGACCAATTTTACTTGGGTTCTTGTACCAAATATCCCATTGAATAATTTTCTCATTCAAACAAGTGAGCAAAACTAATGTGGTTGTAGGTGTTGTATACGGAGCAGTGTTAGGCTTGATTCTTTTTAAAAAAATGAACGACCAATGTCACAAGTACCAGTAGTTATACAAGAACCATGGTGAATTGGTATAAGAATCCTTCGGTTAGAGGTGTTAAGGGGTTACAACTACTTGTGCAAAATGGATATATGCACACTTAAGTATATAATAAGTGGAGGAGACTCTTAACCAATTTTGTTTCTTACCAAACAAATAAATAAAAAGTAAAAAGATATTTTCTTAAATAATAAACAATCGATAATAAATTTGGTTAAATTCTTTTTTTTTGGATCATTTCTCGATATACGTGTGTCATCCTTATGCAGTGGCGATGCTATGTTTTCTGTATCGTTCCAATTTTGTCTAATGTCTCTGAAGGGACTACAAATTTGGGTTGATGATACTGGGTTGCACATTTACTCTCTTTTTCCATGTGTTTCTGCTTTCTACCTGTGTCAGTAGTTATACCTCGGCTGAATCTTTATTATGACCCAATAGTTCTGATATTTAATGCTCAAAGCTGGAAATCTCACTGAAGTTTCAATTCGTAATGGCCCAATCTGAATGTGCATGTGATAGTCAGATAAACAAAAACTGAAATGAGTTGGACAGTTTCTTGTCAAGACGCAAGAGGAGAGTTTTATGAGTGTCTGAAGAATATATTAATTTTTTTTCCCTATATATGATTGAATATGATTTGTGATAGGCATCTTTCATGTGCTATCGTAGGAATTTGGTTGGAACATGGATGGAGAAATTCCCAACATAAAGAGATGGGTAGTACTGTATCCCATCTATATTAATTCAAAGAAGACGATTGCTGAAGGAAGACGTATAGGTGTTAGCAAAGCATGCGAGAATCCTACGTGTGTTGAGATCGGGGATTGCTGCGGTCATCTCAAACTTCCTTTTGCTATTGAGGTTTTCTAGCAATGATATCTCTGTCATTGATAAAGATTTTCCCTTTCATATTAATTTTTGTTCTCCCTGCTGCTTGTTTGCGTCGAAGTTAGCTACACTACATTGAGTTTATATGATCCTATGATAATTGATAGAATGTGTTAATTTATATTACCACCATTTCCGCAGATTGATAAAGCTTATCCTCGTGATTTCATGCAAAGAGGGAGAGTGCGGGTTCTGCTGAAGAAGGAGGATGGAACTCTGTCTAATCCAGCTATTACTTCCAGTAAGGCTTCTAGTTGTCTCTTTGGACCCTTTTCATCCCTTGGAAAAAAGACTTCTATTTATAACTGA

mRNA sequence

ATGAGTGGGCTACCCCATTTGAATCATCTTTTCATCTTTGCCTTTTCTAATTCTCTCGGCATATTTTTTCCGTGGTTTGATTCCAACCCTCCATGTGACGAGTGCTTGGAACAAACTAAATTATATCTAAAGTTTGGCAGCATCTCCTCTCAAATATGGACAAGTGATATTTGTTTTGATCACGTTATTACAACAGTTACTGAGGTTCACGGTTCAACCCCACCTTCATCTTACTCTTCCAAGTCTTCCATCTCCGTCGTCTCGTCTGTCCGACATCCGGTTTCAGTCTCTCTGATCGTCACGGTTTCAGCTGTTCTTCATTCTGAATTTGGTTGGAACATGGATGGAGAAATTCCCAACATAAAGAGATGGGTAGTACTGTATCCCATCTATATTAATTCAAAGAAGACGATTGCTGAAGGAAGACGTATAGGTGTTAGCAAAGCATGCGAGAATCCTACGTGTGTTGAGATCGGGGATTGCTGCGGTCATCTCAAACTTCCTTTTGCTATTGAGATTGATAAAGCTTATCCTCGTGATTTCATGCAAAGAGGGAGAGTGCGGGTTCTGCTGAAGAAGGAGGATGGAACTCTGTCTAATCCAGCTATTACTTCCAGTAAGGCTTCTAGTTGTCTCTTTGGACCCTTTTCATCCCTTGGAAAAAAGACTTCTATTTATAACTGA

Coding sequence (CDS)

ATGAGTGGGCTACCCCATTTGAATCATCTTTTCATCTTTGCCTTTTCTAATTCTCTCGGCATATTTTTTCCGTGGTTTGATTCCAACCCTCCATGTGACGAGTGCTTGGAACAAACTAAATTATATCTAAAGTTTGGCAGCATCTCCTCTCAAATATGGACAAGTGATATTTGTTTTGATCACGTTATTACAACAGTTACTGAGGTTCACGGTTCAACCCCACCTTCATCTTACTCTTCCAAGTCTTCCATCTCCGTCGTCTCGTCTGTCCGACATCCGGTTTCAGTCTCTCTGATCGTCACGGTTTCAGCTGTTCTTCATTCTGAATTTGGTTGGAACATGGATGGAGAAATTCCCAACATAAAGAGATGGGTAGTACTGTATCCCATCTATATTAATTCAAAGAAGACGATTGCTGAAGGAAGACGTATAGGTGTTAGCAAAGCATGCGAGAATCCTACGTGTGTTGAGATCGGGGATTGCTGCGGTCATCTCAAACTTCCTTTTGCTATTGAGATTGATAAAGCTTATCCTCGTGATTTCATGCAAAGAGGGAGAGTGCGGGTTCTGCTGAAGAAGGAGGATGGAACTCTGTCTAATCCAGCTATTACTTCCAGTAAGGCTTCTAGTTGTCTCTTTGGACCCTTTTCATCCCTTGGAAAAAAGACTTCTATTTATAACTGA

Protein sequence

MSGLPHLNHLFIFAFSNSLGIFFPWFDSNPPCDECLEQTKLYLKFGSISSQIWTSDICFDHVITTVTEVHGSTPPSSYSSKSSISVVSSVRHPVSVSLIVTVSAVLHSEFGWNMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSSKASSCLFGPFSSLGKKTSIYN*

Homology

[Close]

BLAST of CSPI04G15480 vs. ExPASy Swiss-Prot
Match: Q943Z6 (Signal recognition particle 19 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SRP19 PE=1 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 9.3e-39
Identity = 73/94 (77.66%), Postives = 81/94 (86.17%), Query Frame = 0


Query: 114 MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEI 173
           MD    NIK+WVV+YP+YINSKKT+AEGRRI VSK+CENP C+EI DCC HLKLP A+EI
Sbjct: 1   MDSGTINIKKWVVIYPVYINSKKTVAEGRRISVSKSCENPNCIEISDCCKHLKLPSAVEI 60

Query: 174 DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSSK 208
           DKAYPRDFMQ GRVRV LK+EDGTL NPAITS K
Sbjct: 61  DKAYPRDFMQVGRVRVQLKREDGTLLNPAITSRK 94

[Close]

BLAST of CSPI04G15480 vs. ExPASy Swiss-Prot
Match: P49964 (Signal recognition particle 19 kDa protein OS=Oryza sativa subsp. japonica OX=39947 GN=SRP19 PE=1 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.9e-32
Identity = 61/88 (69.32%), Postives = 73/88 (82.95%), Query Frame = 0


Query: 120 NIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEIDKAYPR 179
           +IK+W V+YP+Y+NSKKT+AEGRRI   KAC +PTCVEI DCC HLK+P AIE+DKAYPR
Sbjct: 9   SIKKWNVIYPVYLNSKKTVAEGRRIASGKACPDPTCVEIADCCSHLKIPHAIELDKAYPR 68

Query: 180 DFMQRGRVRVLLKKEDGTLSNPAITSSK 208
           DF Q GRVRV LKK+DG+  NPAI + K
Sbjct: 69  DFFQVGRVRVQLKKDDGSPVNPAIKTKK 96

[Close]

BLAST of CSPI04G15480 vs. ExPASy Swiss-Prot
Match: Q3ZBG7 (Signal recognition particle 19 kDa protein OS=Bos taurus OX=9913 GN=SRP19 PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.0e-16
Identity = 46/90 (51.11%), Postives = 58/90 (64.44%), Query Frame = 0


Query: 123 RWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEIDKAYP---- 182
           R++ +YP Y+N+KKTIAEGRRI +SKA ENPT  EI D C  + L   +E +K Y     
Sbjct: 14  RFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCAAVGLNVFLEKNKMYSREWN 73

Query: 183 RDFMQRGRVRVLLKKEDGTLSNPAITSSKA 209
           RD   RGRVRV LK+EDG+L      S K+
Sbjct: 74  RDLQYRGRVRVQLKQEDGSLCLVQFPSRKS 103

[Close]

BLAST of CSPI04G15480 vs. ExPASy Swiss-Prot
Match: P09132 (Signal recognition particle 19 kDa protein OS=Homo sapiens OX=9606 GN=SRP19 PE=1 SV=3)

HSP 1 Score: 88.2 bits (217), Expect = 1.3e-16
Identity = 46/90 (51.11%), Postives = 58/90 (64.44%), Query Frame = 0


Query: 123 RWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEIDKAYP---- 182
           R++ +YP Y+N+KKTIAEGRRI +SKA ENPT  EI D C  + L   +E +K Y     
Sbjct: 14  RFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWN 73

Query: 183 RDFMQRGRVRVLLKKEDGTLSNPAITSSKA 209
           RD   RGRVRV LK+EDG+L      S K+
Sbjct: 74  RDVQYRGRVRVQLKQEDGSLCLVQFPSRKS 103

[Close]

BLAST of CSPI04G15480 vs. ExPASy Swiss-Prot
Match: Q5RBR1 (Signal recognition particle 19 kDa protein OS=Pongo abelii OX=9601 GN=SRP19 PE=1 SV=2)

HSP 1 Score: 88.2 bits (217), Expect = 1.3e-16
Identity = 46/90 (51.11%), Postives = 58/90 (64.44%), Query Frame = 0


Query: 123 RWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEIDKAYP---- 182
           R++ +YP Y+N+KKTIAEGRRI +SKA ENPT  EI D C  + L   +E +K Y     
Sbjct: 14  RFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWN 73

Query: 183 RDFMQRGRVRVLLKKEDGTLSNPAITSSKA 209
           RD   RGRVRV LK+EDG+L      S K+
Sbjct: 74  RDVQYRGRVRVQLKQEDGSLCLVQFPSRKS 103

[Close]

BLAST of CSPI04G15480 vs. ExPASy TrEMBL
Match: A0A0A0L2H8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G304820 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 5.8e-60
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 114 MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEI 173
           MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEI
Sbjct: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEI 60

Query: 174 DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSSKASSCLFGPFSSLGKKTSIYN 228
           DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSSKASSCLFGPFSSLGKKTSIYN
Sbjct: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSSKASSCLFGPFSSLGKKTSIYN 114

[Close]

BLAST of CSPI04G15480 vs. ExPASy TrEMBL
Match: A0A0A0L5F9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171080 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 2.5e-47
Identity = 93/99 (93.94%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 109 EFGWNMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLP 168
           EFG NMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTC EIGDCC HLKLP
Sbjct: 63  EFGRNMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLP 122

Query: 169 FAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSSK 208
           FAIEIDKAYPRDFMQRGRVRV LKKEDG LSNPAITS K
Sbjct: 123 FAIEIDKAYPRDFMQRGRVRVQLKKEDGALSNPAITSRK 161

[Close]

BLAST of CSPI04G15480 vs. ExPASy TrEMBL
Match: A0A6J1CAM2 (signal recognition particle 19 kDa protein OS=Momordica charantia OX=3673 GN=LOC111009488 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 4.8e-46
Identity = 90/94 (95.74%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 114 MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEI 173
           MDGE+PNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTC EIGDCC HLKLPFAIEI
Sbjct: 1   MDGEVPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60

Query: 174 DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSSK 208
           DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITS K
Sbjct: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRK 94

[Close]

BLAST of CSPI04G15480 vs. ExPASy TrEMBL
Match: A0A1S3AYC2 (signal recognition particle 19 kDa protein OS=Cucumis melo OX=3656 GN=LOC103483920 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 1.8e-45
Identity = 90/94 (95.74%), Postives = 90/94 (95.74%), Query Frame = 0


Query: 114 MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEI 173
           MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTC EIGDCC HLKLPFAIEI
Sbjct: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60

Query: 174 DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSSK 208
           DKAYPRDFMQRGRVRV LKKEDGTLSNPAITS K
Sbjct: 61  DKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRK 94

[Close]

BLAST of CSPI04G15480 vs. ExPASy TrEMBL
Match: A0A6J1IY39 (signal recognition particle 19 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC111479513 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 1.8e-45
Identity = 90/94 (95.74%), Postives = 90/94 (95.74%), Query Frame = 0


Query: 114 MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEI 173
           MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTC EIGDCC HLKLPFAIEI
Sbjct: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60

Query: 174 DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSSK 208
           DKAYPRDFMQRGRVRVLLKKEDGTLSNPAI S K
Sbjct: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRK 94

[Close]

BLAST of CSPI04G15480 vs. NCBI nr
Match: KGN54616.2 (hypothetical protein Csa_018066 [Cucumis sativus])

HSP 1 Score: 282.0 bits (720), Expect = 4.7e-72
Identity = 138/140 (98.57%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 68  EVHGSTPPSSYSSKSSISVVSSVRHPVSVSLIVTVSAVLHSEFGWNMDGEIPNIKRWVVL 127
           +VHGSTPPSSYSSKSSISVVSSVRHPVSVSLIVTVSAVLHSEFGWNMDGEIPNIKRWVVL
Sbjct: 38  QVHGSTPPSSYSSKSSISVVSSVRHPVSVSLIVTVSAVLHSEFGWNMDGEIPNIKRWVVL 97

Query: 128 YPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEIDKAYPRDFMQRGRV 187
           YPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEIDKAYPRDFMQRGRV
Sbjct: 98  YPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEIDKAYPRDFMQRGRV 157

Query: 188 RVLLKKEDGTLSNPAITSSK 208
           RVLLKKEDGTLSNPAITS K
Sbjct: 158 RVLLKKEDGTLSNPAITSRK 177

[Close]

BLAST of CSPI04G15480 vs. NCBI nr
Match: KAG6582147.1 (Signal recognition particle 19 kDa protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 201.4 bits (511), Expect = 8.1e-48
Identity = 102/146 (69.86%), Postives = 113/146 (77.40%), Query Frame = 0


Query: 62  VITTVTEVHGSTPPSSYSSKSSISVVSSVRHPVSVSLIVTVSAVLHSEFGWNMDGEIPNI 121
           VI  +T  +    PSS  + ++   +S++ H            +L+ E GWNMDGEIPNI
Sbjct: 5   VIAYLTSTYTQCAPSSMPTPAA-KHISALPH------------LLNLESGWNMDGEIPNI 64

Query: 122 KRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEIDKAYPRDF 181
           KRWVVLYP+YINSKKTIAEGRRIGVSKACENPTC EIGDCC HLKLPFAIEIDKAYPRDF
Sbjct: 65  KRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDF 124

Query: 182 MQRGRVRVLLKKEDGTLSNPAITSSK 208
           MQRGRVRVLLKKEDGTLSNPAI S K
Sbjct: 125 MQRGRVRVLLKKEDGTLSNPAIPSRK 137

[Close]

BLAST of CSPI04G15480 vs. NCBI nr
Match: XP_004147903.1 (signal recognition particle 19 kDa protein [Cucumis sativus] >XP_004147904.1 signal recognition particle 19 kDa protein [Cucumis sativus] >XP_011653673.1 signal recognition particle 19 kDa protein [Cucumis sativus])

HSP 1 Score: 198.7 bits (504), Expect = 5.3e-47
Identity = 93/94 (98.94%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 114 MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEI 173
           MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEI
Sbjct: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEI 60

Query: 174 DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSSK 208
           DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITS K
Sbjct: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRK 94

[Close]

BLAST of CSPI04G15480 vs. NCBI nr
Match: XP_038879562.1 (signal recognition particle 19 kDa protein [Benincasa hispida])

HSP 1 Score: 194.9 bits (494), Expect = 7.6e-46
Identity = 91/94 (96.81%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 114 MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEI 173
           MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTC EIGDCC HLKLPFAIEI
Sbjct: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60

Query: 174 DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSSK 208
           DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITS K
Sbjct: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRK 94

[Close]

BLAST of CSPI04G15480 vs. NCBI nr
Match: XP_022138272.1 (signal recognition particle 19 kDa protein [Momordica charantia])

HSP 1 Score: 194.5 bits (493), Expect = 9.9e-46
Identity = 90/94 (95.74%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 114 MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEI 173
           MDGE+PNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTC EIGDCC HLKLPFAIEI
Sbjct: 1   MDGEVPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60

Query: 174 DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSSK 208
           DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITS K
Sbjct: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRK 94

[Close]

BLAST of CSPI04G15480 vs. TAIR 10
Match: AT1G48160.1 (signal recognition particle 19 kDa protein, putative / SRP19, putative )

HSP 1 Score: 161.8 bits (408), Expect = 6.6e-40
Identity = 73/94 (77.66%), Postives = 81/94 (86.17%), Query Frame = 0


Query: 114 MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEI 173
           MD    NIK+WVV+YP+YINSKKT+AEGRRI VSK+CENP C+EI DCC HLKLP A+EI
Sbjct: 1   MDSGTINIKKWVVIYPVYINSKKTVAEGRRISVSKSCENPNCIEISDCCKHLKLPSAVEI 60

Query: 174 DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSSK 208
           DKAYPRDFMQ GRVRV LK+EDGTL NPAITS K
Sbjct: 61  DKAYPRDFMQVGRVRVQLKREDGTLLNPAITSRK 94

The following BLAST results are available for this feature:

BLAST of CSPI04G15480 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q943Z6	9.3e-39	77.66	Signal recognition particle 19 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SR...	[more]
P49964	2.9e-32	69.32	Signal recognition particle 19 kDa protein OS=Oryza sativa subsp. japonica OX=39...	[more]
Q3ZBG7	1.0e-16	51.11	Signal recognition particle 19 kDa protein OS=Bos taurus OX=9913 GN=SRP19 PE=2 S...	[more]
P09132	1.3e-16	51.11	Signal recognition particle 19 kDa protein OS=Homo sapiens OX=9606 GN=SRP19 PE=1...	[more]
Q5RBR1	1.3e-16	51.11	Signal recognition particle 19 kDa protein OS=Pongo abelii OX=9601 GN=SRP19 PE=1...	[more]

BLAST of CSPI04G15480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2H8	5.8e-60	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G304820 PE=4 SV=1	[more]
A0A0A0L5F9	2.5e-47	93.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171080 PE=4 SV=1	[more]
A0A6J1CAM2	4.8e-46	95.74	signal recognition particle 19 kDa protein OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A1S3AYC2	1.8e-45	95.74	signal recognition particle 19 kDa protein OS=Cucumis melo OX=3656 GN=LOC1034839...	[more]
A0A6J1IY39	1.8e-45	95.74	signal recognition particle 19 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]

BLAST of CSPI04G15480 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54616.2	4.7e-72	98.57	hypothetical protein Csa_018066 [Cucumis sativus]	[more]
KAG6582147.1	8.1e-48	69.86	Signal recognition particle 19 kDa protein, partial [Cucurbita argyrosperma subs...	[more]
XP_004147903.1	5.3e-47	98.94	signal recognition particle 19 kDa protein [Cucumis sativus] >XP_004147904.1 sig...	[more]
XP_038879562.1	7.6e-46	96.81	signal recognition particle 19 kDa protein [Benincasa hispida]	[more]
XP_022138272.1	9.9e-46	95.74	signal recognition particle 19 kDa protein [Momordica charantia]	[more]

BLAST of CSPI04G15480 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G48160.1	6.6e-40	77.66	signal recognition particle 19 kDa protein, putative / SRP19, putative	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036521	Signal recognition particle, subunit SRP19-like superfamily	GENE3D	3.30.56.30		coord: 113..216 e-value: 1.9E-33 score: 117.4
IPR036521	Signal recognition particle, subunit SRP19-like superfamily	SUPERFAMILY	69695	SRP19	coord: 119..205
IPR002778	Signal recognition particle, SRP19 subunit	PFAM	PF01922	SRP19	coord: 126..205 e-value: 1.7E-23 score: 83.3
IPR002778	Signal recognition particle, SRP19 subunit	PANTHER	PTHR17453	SIGNAL RECOGNITION PARTICLE 19 KD PROTEIN	coord: 121..207

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G15480.1	CSPI04G15480.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006617	SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition
biological_process	GO:0006614	SRP-dependent cotranslational protein targeting to membrane
cellular_component	GO:0005786	signal recognition particle, endoplasmic reticulum targeting
cellular_component	GO:0048500	signal recognition particle
molecular_function	GO:0008312	7S RNA binding
molecular_function	GO:0004386	helicase activity