CSPI04G15110 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G15110
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	ctenidin-1-like
Location	Chr4: 12593344 .. 12594095 (-)
RNA-Seq Expression	CSPI04G15110
Synteny	CSPI04G15110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCGATGCTGCATTTATTATTATTCCGGTAGTTTTTCTTTCAATTTGTGTAGTTTTCGCGGTGCTGAGTTTACTTTGCCGGTGGACTGGTGGTGGCAGTTCTACCGGAGATGGTGCTCATTTCGGAGGCGCTGATGGCCCAGGTGGAGGAGACGATGGTGGAGAAGACGGTGGTGGAGGTGGTGGCTATGATGGTGGAGGTGGCGGTTATGATGGCGGAGGTGGCAGTGGTGGAGGCGGCGGCGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCGGTGGTGGTCGTGGCGGTGGGGAGTGCTACAATTGTGGCCGGATGGGTCATTTGGCGAGGGATTGTTACAGGGGTAATGGCGGTGCTCCTTCCGGCCGTAGATACGACGGTGGGGGAGGAGATGGTGGAGGTGGAGGCGGAGGTGGGGGAGGAGGCGGAGGCGGAGGTGGGGGAGGTGGCGGAGGG

mRNA sequence

ATGGTCGATGCTGCATTTATTATTATTCCGGTAGTTTTTCTTTCAATTTGTGTAGTTTTCGCGGTGCTGAGTTTACTTTGCCGGTGGACTGGTGGTGGCAGTTCTACCGGAGATGGTGCTCATTTCGGAGGCGCTGATGGCCCAGGTGGAGGAGACGATGGTGGAGAAGACGGTGGTGGAGGTGGTGGCTATGATGGTGGAGGTGGCGGTTATGATGGCGGAGGTGGCAGTGATGGTGGAGGTGGAGGCGGAGGTGGGGGAGGAGGCGGAGGCGGAGGTGGGGGAGGTGGCGGAGGG

Coding sequence (CDS)

ATGGTCGATGCTGCATTTATTATTATTCCGGTAGTTTTTCTTTCAATTTGTGTAGTTTTCGCGGTGCTGAGTTTACTTTGCCGGTGGACTGGTGGTGGCAGTTCTACCGGAGATGGTGCTCATTTCGGAGGCGCTGATGGCCCAGGTGGAGGAGACGATGGTGGAGAAGACGGTGGTGGAGGTGGTGGCTATGATGGTGGAGGTGGCGGTTATGATGGCGGAGGTGGCAGTGATGGTGGAGGTGGAGGCGGAGGTGGGGGAGGAGGCGGAGGCGGAGGTGGGGGAGGTGGCGGAGGG

Protein sequence

MVDAAFIIIPVVFLSICVVFAVLSLLCRWTGGGSSTGDGAHFGGADGPGGGDDGGEDGGGGGGYDGGGGGYDGGGGSDGGGGGGGGGGGGGGGGGGGGG

Homology

[Close]

BLAST of CSPI04G15110 vs. ExPASy TrEMBL
Match: A0A0A0L128 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G297470 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 2.0e-20
Identity = 97/99 (97.98%), Postives = 97/99 (97.98%), Query Frame = 0


Query: 1   MVDAAFIIIPVVFLSICVVFAVLSLLCRWTGGGSSTGDGAHFGGADGPGGGDDGGEDGGG 60
           MVDAAFIIIPVVFLSICVVFAVLSLLCRWTGGGSSTGDGAHFGGADGPGGGDDGGEDGGG
Sbjct: 1   MVDAAFIIIPVVFLSICVVFAVLSLLCRWTGGGSSTGDGAHFGGADGPGGGDDGGEDGGG 60

Query: 61  GGGYDGGGGGYDGGGGSDGGGGGGGGGGGGGGGGGGGGG 100
           GGGYDGGGGGYDGGGGS GGGGGGG GGGGGGGGGGGGG
Sbjct: 61  GGGYDGGGGGYDGGGGSGGGGGGGGDGGGGGGGGGGGGG 99

[Close]

BLAST of CSPI04G15110 vs. ExPASy TrEMBL
Match: A0A1S3BPC8 (ctenidin-1-like OS=Cucumis melo OX=3656 GN=LOC103491755 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 4.4e-04
Identity = 63/76 (82.89%), Postives = 64/76 (84.21%), Query Frame = 0


Query: 17  CVVFAVLSLLCRWTGGGSSTGDGAHFGGADGP-GGGDDGGEDGGGGGGYDGGGGGYDGGG 76
           C VFAVLSLLCRWTGGGSST DGA  GGA+G  GGGDDGGED  GGGGYDGGGGGYDGGG
Sbjct: 74  CGVFAVLSLLCRWTGGGSSTEDGAFSGGANGDLGGGDDGGED--GGGGYDGGGGGYDGGG 133

Query: 77  GSDGGGGGGGGGGGGG 92
           G   GGGGGGGG GGG
Sbjct: 134 GGYDGGGGGGGGEGGG 147

[Close]

BLAST of CSPI04G15110 vs. NCBI nr
Match: KGN54297.1 (hypothetical protein Csa_018030 [Cucumis sativus])

HSP 1 Score: 108.2 bits (269), Expect = 4.1e-20
Identity = 97/99 (97.98%), Postives = 97/99 (97.98%), Query Frame = 0


Query: 1   MVDAAFIIIPVVFLSICVVFAVLSLLCRWTGGGSSTGDGAHFGGADGPGGGDDGGEDGGG 60
           MVDAAFIIIPVVFLSICVVFAVLSLLCRWTGGGSSTGDGAHFGGADGPGGGDDGGEDGGG
Sbjct: 1   MVDAAFIIIPVVFLSICVVFAVLSLLCRWTGGGSSTGDGAHFGGADGPGGGDDGGEDGGG 60

Query: 61  GGGYDGGGGGYDGGGGSDGGGGGGGGGGGGGGGGGGGGG 100
           GGGYDGGGGGYDGGGGS GGGGGGG GGGGGGGGGGGGG
Sbjct: 61  GGGYDGGGGGYDGGGGSGGGGGGGGDGGGGGGGGGGGGG 99

[Close]

BLAST of CSPI04G15110 vs. NCBI nr
Match: XP_011654372.1 (glycine-rich protein DOT1 [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 2.6e-11
Identity = 78/80 (97.50%), Postives = 78/80 (97.50%), Query Frame = 0


Query: 20  FAVLSLLCRWTGGGSSTGDGAHFGGADGPGGGDDGGEDGGGGGGYDGGGGGYDGGGGSDG 79
           FAVLSLLCRWTGGGSSTGDGAHFGGADGPGGGDDGGEDGGGGGGYDGGGGGYDGGGGS G
Sbjct: 88  FAVLSLLCRWTGGGSSTGDGAHFGGADGPGGGDDGGEDGGGGGGYDGGGGGYDGGGGSGG 147

Query: 80  GGGGGGGGGGGGGGGGGGGG 100
           GGGGGG GGGGGGGGGGGGG
Sbjct: 148 GGGGGGDGGGGGGGGGGGGG 167

[Close]

BLAST of CSPI04G15110 vs. NCBI nr
Match: XP_008450046.1 (PREDICTED: ctenidin-1-like [Cucumis melo])

HSP 1 Score: 53.9 bits (128), Expect = 9.1e-04
Identity = 63/76 (82.89%), Postives = 64/76 (84.21%), Query Frame = 0


Query: 17  CVVFAVLSLLCRWTGGGSSTGDGAHFGGADGP-GGGDDGGEDGGGGGGYDGGGGGYDGGG 76
           C VFAVLSLLCRWTGGGSST DGA  GGA+G  GGGDDGGED  GGGGYDGGGGGYDGGG
Sbjct: 74  CGVFAVLSLLCRWTGGGSSTEDGAFSGGANGDLGGGDDGGED--GGGGYDGGGGGYDGGG 133

Query: 77  GSDGGGGGGGGGGGGG 92
           G   GGGGGGGG GGG
Sbjct: 134 GGYDGGGGGGGGEGGG 147

The following BLAST results are available for this feature:

BLAST of CSPI04G15110 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI04G15110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L128	2.0e-20	97.98	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G297470 PE=4 SV=1	[more]
A0A1S3BPC8	4.4e-04	82.89	ctenidin-1-like OS=Cucumis melo OX=3656 GN=LOC103491755 PE=4 SV=1	[more]

BLAST of CSPI04G15110 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54297.1	4.1e-20	97.98	hypothetical protein Csa_018030 [Cucumis sativus]	[more]
XP_011654372.1	2.6e-11	97.50	glycine-rich protein DOT1 [Cucumis sativus]	[more]
XP_008450046.1	9.1e-04	82.89	PREDICTED: ctenidin-1-like [Cucumis melo]	[more]

BLAST of CSPI04G15110 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G15110.1	CSPI04G15110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane