Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: five_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCTTCTAATATTATCTTAGAGATCGATAATGGTTAGAACAGCATACATCATATTTCCCATTGTTGTTGGGGTTTTTATAATTTCTAATATTGTTGTATTTTTGTTGTGTTTACTTTGGCGGAAGAGGAAAGTAATGTCTACGGGAAAAGATAAAAATGGAATTTATGTTGAAGGTGGAAATACGAGTACAACAGACAGGAATATGTTTTCCGGCAGTAGTTATGGAGGTTGGGGTTGGGATTGGACTTTTAGCACTGTAGGAGATACAGTCAACGGCGAAAGTGGCAGGAATAGTCTTGAGGTTGGAGATGGAAACGGTGGCCTTACTGGAGGCGGCGGAGGAGGTGGCAGTGAAGCAAGTATTCATGAGACAGATTGTGGTGATGGTGATAGAGGAGGTGGAGGGGTTTCTGATCATGGAGTTGGTGTGAGTTCCCATGTGGATGGAGGAGGTTTTAGTTATGGAGGTGGAGGAACAAGTTCTAATGATCAGGGCGGAGGTGGAGGTGGAGGTGGTGATGGAGGTGGAGGTGGAGGTGGAGGTGGAGGTGGAGGGTTTTCTGATTTTGGAGGGGGAGGATCATCTATTTGGTGA
mRNA sequence
GTCTTCTAATATTATCTTAGAGATCGATAATGGTTAGAACAGCATACATCATATTTCCCATTGTTGTTGGGGTTTTTATAATTTCTAATATTGTTGTATTTTTGTTGTGTTTACTTTGGCGGAAGAGGAAAGTAATGTCTACGGGAAAAGATAAAAATGGAATTTATGTTGAAGGTGGAAATACGAGTACAACAGACAGGAATATGTTTTCCGGCAGTAGTTATGGAGGTTGGGGTTGGGATTGGACTTTTAGCACTGTAGGAGATACAGTCAACGGCGAAAGTGGCAGGAATAGTCTTGAGGTTGGAGATGGAAACGGTGGCCTTACTGGAGGCGGCGGAGGAGGTGGCAGTGAAGCAAGTATTCATGAGACAGATTGTGGTGATGGTGATAGAGGAGGTGGAGGGGTTTCTGATCATGGAGTTGGTGTGAGTTCCCATGTGGATGGAGGAGGTTTTAGTTATGGAGGTGGAGGAACAAGTTCTAATGATCAGGGCGGAGGTGGAGGTGGAGGTGGTGATGGAGGTGGAGGTGGAGGTGGAGGTGGAGGTGGAGGGTTTTCTGATTTTGGAGGGGGAGGATCATCTATTTGGTGA
Coding sequence (CDS)
ATGGTTAGAACAGCATACATCATATTTCCCATTGTTGTTGGGGTTTTTATAATTTCTAATATTGTTGTATTTTTGTTGTGTTTACTTTGGCGGAAGAGGAAAGTAATGTCTACGGGAAAAGATAAAAATGGAATTTATGTTGAAGGTGGAAATACGAGTACAACAGACAGGAATATGTTTTCCGGCAGTAGTTATGGAGGTTGGGGTTGGGATTGGACTTTTAGCACTGTAGGAGATACAGTCAACGGCGAAAGTGGCAGGAATAGTCTTGAGGTTGGAGATGGAAACGGTGGCCTTACTGGAGGCGGCGGAGGAGGTGGCAGTGAAGCAAGTATTCATGAGACAGATTGTGGTGATGGTGATAGAGGAGGTGGAGGGGTTTCTGATCATGGAGTTGGTGTGAGTTCCCATGTGGATGGAGGAGGTTTTAGTTATGGAGGTGGAGGAACAAGTTCTAATGATCAGGGCGGAGGTGGAGGTGGAGGTGGTGATGGAGGTGGAGGTGGAGGTGGAGGTGGAGGTGGAGGGTTTTCTGATTTTGGAGGGGGAGGATCATCTATTTGGTGA
Protein sequence
MVRTAYIIFPIVVGVFIISNIVVFLLCLLWRKRKVMSTGKDKNGIYVEGGNTSTTDRNMFSGSSYGGWGWDWTFSTVGDTVNGESGRNSLEVGDGNGGLTGGGGGGGSEASIHETDCGDGDRGGGGVSDHGVGVSSHVDGGGFSYGGGGTSSNDQGGGGGGGGDGGGGGGGGGGGGFSDFGGGGSSIW*
Homology
BLAST of CSPI04G15090 vs. ExPASy TrEMBL
Match:
A0A0A0KXB6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G297450 PE=4 SV=1)
HSP 1 Score: 241.1 bits (614), Expect = 3.7e-60
Identity = 149/171 (87.13%), Postives = 150/171 (87.72%), Query Frame = 0
Query: 36 MSTGKDKNGIYVEGGNTSTTDRNMFSGSSYGGWGWDWTFSTVGDTVNGESGRNSLEVGDG 95
MSTGKDKNGIYVEGGNTSTTD NMFSGSSYGGWGWDWTFSTVGDTVNG SGRNSLEVGDG
Sbjct: 1 MSTGKDKNGIYVEGGNTSTTDSNMFSGSSYGGWGWDWTFSTVGDTVNGGSGRNSLEVGDG 60
Query: 96 NGGLTGGGGGGGSEASIHETDCGDGDRGGGGVSDHGVGVSSHVDGGGFSYGGGGTSSNDQ 155
NGGLTGGGGGGGSEASIHETDCGDGDRGGGGVSDHGVGVSSHVDGGGFSYGGGGTSSND+
Sbjct: 61 NGGLTGGGGGGGSEASIHETDCGDGDRGGGGVSDHGVGVSSHVDGGGFSYGGGGTSSNDR 120
Query: 156 ------------------GGGGGGGGDGGGGGGGGGGGGFSDFGGGGSSIW 189
GGGGGGGG GGGGGGGGGGGGFSDFGGGGSSIW
Sbjct: 121 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGFSDFGGGGSSIW 171
BLAST of CSPI04G15090 vs. ExPASy TrEMBL
Match:
A0A5A7TNP5 (Glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00930 PE=4 SV=1)
HSP 1 Score: 196.1 bits (497), Expect = 1.4e-46
Identity = 119/153 (77.78%), Postives = 124/153 (81.05%), Query Frame = 0
Query: 36 MSTGKDKNGIYVEGGNTSTTDRNMFSGSSYGGWGWDWTFSTVGDTVNGESGRNSLEVGDG 95
MS KDK GIY+EGGNTSTTD NMF+G+SYGGWGWDWTFSTVGDTVNGE G NSLEVGDG
Sbjct: 1 MSKRKDKIGIYLEGGNTSTTDSNMFTGTSYGGWGWDWTFSTVGDTVNGEGGENSLEVGDG 60
Query: 96 NGGLTGGGGGGGSEASIHETDCGDGDRGGGGVSDHGVGVSSHVDGGGFSYGGGGTSSNDQ 155
NGG+TGG GGGGS SIHET CG GD GG GVS+HGVGVSSHVD GG SYGGGGTSSND
Sbjct: 61 NGGITGGNGGGGSGVSIHETGCGGGDSGGRGVSEHGVGVSSHVD-GGHSYGGGGTSSNDH 120
Query: 156 GGGGGGGGDGGGGGGGGGGGGFSDFGGGGSSIW 189
GGGG GGGGFSDFGGGGSSIW
Sbjct: 121 ------------GGGGSGGGGFSDFGGGGSSIW 140
BLAST of CSPI04G15090 vs. ExPASy TrEMBL
Match:
A0A1S3BNC1 (glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo OX=3656 GN=LOC103491739 PE=4 SV=1)
HSP 1 Score: 196.1 bits (497), Expect = 1.4e-46
Identity = 119/153 (77.78%), Postives = 124/153 (81.05%), Query Frame = 0
Query: 36 MSTGKDKNGIYVEGGNTSTTDRNMFSGSSYGGWGWDWTFSTVGDTVNGESGRNSLEVGDG 95
MS KDK GIY+EGGNTSTTD NMF+G+SYGGWGWDWTFSTVGDTVNGE G NSLEVGDG
Sbjct: 1 MSKRKDKIGIYLEGGNTSTTDSNMFTGTSYGGWGWDWTFSTVGDTVNGEGGENSLEVGDG 60
Query: 96 NGGLTGGGGGGGSEASIHETDCGDGDRGGGGVSDHGVGVSSHVDGGGFSYGGGGTSSNDQ 155
NGG+TGG GGGGS SIHET CG GD GG GVS+HGVGVSSHVD GG SYGGGGTSSND
Sbjct: 61 NGGITGGNGGGGSGVSIHETGCGGGDSGGRGVSEHGVGVSSHVD-GGHSYGGGGTSSNDH 120
Query: 156 GGGGGGGGDGGGGGGGGGGGGFSDFGGGGSSIW 189
GGGG GGGGFSDFGGGGSSIW
Sbjct: 121 ------------GGGGSGGGGFSDFGGGGSSIW 140
BLAST of CSPI04G15090 vs. ExPASy TrEMBL
Match:
A0A6J1EUX9 (glycine-rich protein 23-like OS=Cucurbita moschata OX=3662 GN=LOC111438150 PE=4 SV=1)
HSP 1 Score: 80.9 bits (198), Expect = 6.4e-12
Identity = 109/229 (47.60%), Postives = 125/229 (54.59%), Query Frame = 0
Query: 1 MVRTAYIIFPIVVGVFIISNIVVFLLCLLWRKR--KVMSTGKDKNGIYVEGGN------- 60
MVRTAYI+ PI VG FII V+ L CLL R+R K ++ K+G YVEGGN
Sbjct: 1 MVRTAYIVLPI-VGAFIIC-FVMLLSCLLCRRRVSKGDASRGRKSGSYVEGGNRIGIVVD 60
Query: 61 ----TSTTDRNMFSGSSYGGWGWDWTFSTVGDTVNGE-SGRNSLEVGDGNGGL------- 120
TT MF+G YGGWGWDWTFS+VGDT NG +G +VG G G
Sbjct: 61 DGSYVGTTP--MFNG-GYGGWGWDWTFSSVGDTGNGNGNGGGGCDVGGGGGDSEVGGRGS 120
Query: 121 -------TGGGGGGGSEASIHETDCGDG---------DRGGGGVSDHGVGVSSHVDGGGF 180
G G G G+ AS HE GDG GGG VSD G G S H+DGG
Sbjct: 121 DIGRGDGVGCGNGDGNGASFHEAGGGDGGIASSFDECGGGGGTVSDRGGGGSFHMDGGHS 180
Query: 181 SYGGGGTSSNDQGGGGGGGGDGGGGGG----GGGGGGFSDFGGGGSSIW 189
++GGG +S GGGGG D GGGGG GGGGGG+ GGGGSS W
Sbjct: 181 NFGGGVSSHG--GGGGGASYDHGGGGGVSDYGGGGGGYDFGGGGGSSFW 222
BLAST of CSPI04G15090 vs. ExPASy TrEMBL
Match:
A0A6J1HSN5 (loricrin-like OS=Cucurbita maxima OX=3661 GN=LOC111466258 PE=4 SV=1)
HSP 1 Score: 74.3 bits (181), Expect = 6.0e-10
Identity = 100/216 (46.30%), Postives = 115/216 (53.24%), Query Frame = 0
Query: 23 VFLLCLLWRKR--KVMSTGKDKNGIYVEGGN-----------TSTTDRNMFSGSSYGGWG 82
+ L CLL R+R K ++ K+G YVEGGN TT MF+G YGGWG
Sbjct: 1 MLLSCLLCRRRVSKGDASRGRKSGSYVEGGNRIGIVVDDGSYVGTTP--MFNG-GYGGWG 60
Query: 83 WDWTFSTVGDTVNG---------------ESGRNSLEVGDGNGGLTGGGGGGGSEASIHE 142
WDWTFS+VGDT NG E G +VG G+G G G G G+ AS HE
Sbjct: 61 WDWTFSSVGDTGNGNDGGGCDVGGGGGDSEVGGRGSDVGRGDG--VGCGNGDGNGASFHE 120
Query: 143 TDCGDG---------DRGGGGVSDHGVGVSSHVDGGGFSYGGGGTS--------SNDQGG 189
GDG GGG VSDHG G S H+DGG ++GGG +S S+D GG
Sbjct: 121 AGGGDGGVASSFDECGGGGGTVSDHGGGGSFHMDGGHSNFGGGASSHGGGGDGASHDHGG 180
BLAST of CSPI04G15090 vs. NCBI nr
Match:
XP_008450026.1 (PREDICTED: glycine-rich cell wall structural protein 1.0-like [Cucumis melo] >KAA0045153.1 glycine-rich cell wall structural protein 1.0-like [Cucumis melo var. makuwa] >TYK23585.1 glycine-rich cell wall structural protein 1.0-like [Cucumis melo var. makuwa])
HSP 1 Score: 196.1 bits (497), Expect = 2.8e-46
Identity = 119/153 (77.78%), Postives = 124/153 (81.05%), Query Frame = 0
Query: 36 MSTGKDKNGIYVEGGNTSTTDRNMFSGSSYGGWGWDWTFSTVGDTVNGESGRNSLEVGDG 95
MS KDK GIY+EGGNTSTTD NMF+G+SYGGWGWDWTFSTVGDTVNGE G NSLEVGDG
Sbjct: 1 MSKRKDKIGIYLEGGNTSTTDSNMFTGTSYGGWGWDWTFSTVGDTVNGEGGENSLEVGDG 60
Query: 96 NGGLTGGGGGGGSEASIHETDCGDGDRGGGGVSDHGVGVSSHVDGGGFSYGGGGTSSNDQ 155
NGG+TGG GGGGS SIHET CG GD GG GVS+HGVGVSSHVD GG SYGGGGTSSND
Sbjct: 61 NGGITGGNGGGGSGVSIHETGCGGGDSGGRGVSEHGVGVSSHVD-GGHSYGGGGTSSNDH 120
Query: 156 GGGGGGGGDGGGGGGGGGGGGFSDFGGGGSSIW 189
GGGG GGGGFSDFGGGGSSIW
Sbjct: 121 ------------GGGGSGGGGFSDFGGGGSSIW 140
BLAST of CSPI04G15090 vs. NCBI nr
Match:
KAE8649549.1 (hypothetical protein Csa_018168, partial [Cucumis sativus])
HSP 1 Score: 188.0 bits (476), Expect = 7.7e-44
Identity = 96/98 (97.96%), Postives = 96/98 (97.96%), Query Frame = 0
Query: 36 MSTGKDKNGIYVEGGNTSTTDRNMFSGSSYGGWGWDWTFSTVGDTVNGESGRNSLEVGDG 95
MSTGKDKNGIYVEGGNTSTTD NMFSGSSYGGWGWDWTFSTVGDTVNG SGRNSLEVGDG
Sbjct: 1 MSTGKDKNGIYVEGGNTSTTDSNMFSGSSYGGWGWDWTFSTVGDTVNGGSGRNSLEVGDG 60
Query: 96 NGGLTGGGGGGGSEASIHETDCGDGDRGGGGVSDHGVG 134
NGGLTGGGGGGGSEASIHETDCGDGDRGGGGVSDHGVG
Sbjct: 61 NGGLTGGGGGGGSEASIHETDCGDGDRGGGGVSDHGVG 98
BLAST of CSPI04G15090 vs. NCBI nr
Match:
KAG6595345.1 (hypothetical protein SDJN03_11898, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 81.3 bits (199), Expect = 1.0e-11
Identity = 110/237 (46.41%), Postives = 126/237 (53.16%), Query Frame = 0
Query: 1 MVRTAYIIFPIVVGVFIISNIVVFLLCLLWRKR--KVMSTGKDKNGIYVEGGN------- 60
MVRTAYI+ PI VG FIIS V+ L CLL R+R K ++ K+G YVEGGN
Sbjct: 1 MVRTAYIVLPI-VGAFIIS-FVMLLSCLLCRRRVSKGDASRGRKSGSYVEGGNRIGIVVD 60
Query: 61 ----TSTTDRNMFSGSSYGGWGWDWTFSTVGDTVNGESGRNSLEVGDGNGGLTGGGGGGG 120
TT MF+G YGGWGWDWTFS+VGDT NG G+G GG GGGGG
Sbjct: 61 DGSYVGTTP--MFNG-GYGGWGWDWTFSSVGDTGNGN--------GNGGGGCDVGGGGGD 120
Query: 121 SEASIHETD--------CGDGD------------------------RGGGGVSDHGVGVS 180
SE +D CG+GD GGG VSDHG G S
Sbjct: 121 SEVGGRGSDIGRGDGVGCGNGDGNGASFHEAGGGGGGIASSFDECGGGGGTVSDHGGGGS 180
Query: 181 SHVDGGGFSYGGGGTSSNDQGGGGGGGGDGGGGGG----GGGGGGFSDFGGGGSSIW 189
H+DGG ++GGG +S GGGGG D GGGGG GGGGGG+ G GGSS W
Sbjct: 181 FHMDGGHSNFGGGVSSHG--GGGGGASYDHGGGGGVSDYGGGGGGYDFGGSGGSSFW 222
BLAST of CSPI04G15090 vs. NCBI nr
Match:
XP_022931867.1 (glycine-rich protein 23-like [Cucurbita moschata])
HSP 1 Score: 80.9 bits (198), Expect = 1.3e-11
Identity = 109/229 (47.60%), Postives = 125/229 (54.59%), Query Frame = 0
Query: 1 MVRTAYIIFPIVVGVFIISNIVVFLLCLLWRKR--KVMSTGKDKNGIYVEGGN------- 60
MVRTAYI+ PI VG FII V+ L CLL R+R K ++ K+G YVEGGN
Sbjct: 1 MVRTAYIVLPI-VGAFIIC-FVMLLSCLLCRRRVSKGDASRGRKSGSYVEGGNRIGIVVD 60
Query: 61 ----TSTTDRNMFSGSSYGGWGWDWTFSTVGDTVNGE-SGRNSLEVGDGNGGL------- 120
TT MF+G YGGWGWDWTFS+VGDT NG +G +VG G G
Sbjct: 61 DGSYVGTTP--MFNG-GYGGWGWDWTFSSVGDTGNGNGNGGGGCDVGGGGGDSEVGGRGS 120
Query: 121 -------TGGGGGGGSEASIHETDCGDG---------DRGGGGVSDHGVGVSSHVDGGGF 180
G G G G+ AS HE GDG GGG VSD G G S H+DGG
Sbjct: 121 DIGRGDGVGCGNGDGNGASFHEAGGGDGGIASSFDECGGGGGTVSDRGGGGSFHMDGGHS 180
Query: 181 SYGGGGTSSNDQGGGGGGGGDGGGGGG----GGGGGGFSDFGGGGSSIW 189
++GGG +S GGGGG D GGGGG GGGGGG+ GGGGSS W
Sbjct: 181 NFGGGVSSHG--GGGGGASYDHGGGGGVSDYGGGGGGYDFGGGGGSSFW 222
BLAST of CSPI04G15090 vs. NCBI nr
Match:
XP_022966633.1 (loricrin-like [Cucurbita maxima])
HSP 1 Score: 74.3 bits (181), Expect = 1.2e-09
Identity = 100/216 (46.30%), Postives = 115/216 (53.24%), Query Frame = 0
Query: 23 VFLLCLLWRKR--KVMSTGKDKNGIYVEGGN-----------TSTTDRNMFSGSSYGGWG 82
+ L CLL R+R K ++ K+G YVEGGN TT MF+G YGGWG
Sbjct: 1 MLLSCLLCRRRVSKGDASRGRKSGSYVEGGNRIGIVVDDGSYVGTTP--MFNG-GYGGWG 60
Query: 83 WDWTFSTVGDTVNG---------------ESGRNSLEVGDGNGGLTGGGGGGGSEASIHE 142
WDWTFS+VGDT NG E G +VG G+G G G G G+ AS HE
Sbjct: 61 WDWTFSSVGDTGNGNDGGGCDVGGGGGDSEVGGRGSDVGRGDG--VGCGNGDGNGASFHE 120
Query: 143 TDCGDG---------DRGGGGVSDHGVGVSSHVDGGGFSYGGGGTS--------SNDQGG 189
GDG GGG VSDHG G S H+DGG ++GGG +S S+D GG
Sbjct: 121 AGGGDGGVASSFDECGGGGGTVSDHGGGGSFHMDGGHSNFGGGASSHGGGGDGASHDHGG 180
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0KXB6 | 3.7e-60 | 87.13 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G297450 PE=4 SV=1 | [more] |
| A0A5A7TNP5 | 1.4e-46 | 77.78 | Glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo var. makuwa O... | [more] |
| A0A1S3BNC1 | 1.4e-46 | 77.78 | glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo OX=3656 GN=LO... | [more] |
| A0A6J1EUX9 | 6.4e-12 | 47.60 | glycine-rich protein 23-like OS=Cucurbita moschata OX=3662 GN=LOC111438150 PE=4 ... | [more] |
| A0A6J1HSN5 | 6.0e-10 | 46.30 | loricrin-like OS=Cucurbita maxima OX=3661 GN=LOC111466258 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| XP_008450026.1 | 2.8e-46 | 77.78 | PREDICTED: glycine-rich cell wall structural protein 1.0-like [Cucumis melo] >KA... | [more] |
| KAE8649549.1 | 7.7e-44 | 97.96 | hypothetical protein Csa_018168, partial [Cucumis sativus] | [more] |
| KAG6595345.1 | 1.0e-11 | 46.41 | hypothetical protein SDJN03_11898, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| XP_022931867.1 | 1.3e-11 | 47.60 | glycine-rich protein 23-like [Cucurbita moschata] | [more] |
| XP_022966633.1 | 1.2e-09 | 46.30 | loricrin-like [Cucurbita maxima] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
