CSPI04G14600 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI04G14600
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr4: 12251120 .. 12251527 (+)
RNA-Seq ExpressionCSPI04G14600
SyntenyCSPI04G14600
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATCTCTCACACCTTCATTTCCCTCTCTTTTTTATACTCTTAAATCCCTAGCTGCTGCTGCAGCAACAACAATCAGTACTGCTGTTTACTCTCCGTCTACACTTTGTTCAAGCTATGAAGGTCTGAGAGTATTCATCATCAGTGGCCTTCGAATCAATGATTCGGTGAGTAGCTTCTTGTTTAATCTCGTTTTCGTTTGGTTCTACTTTAATCACAGAGTTTAGGTAAGCTGCAGTGTAGTTGAAAACTTGAAAGGTACTTTTGTGCGATGGAGAGTTGAAAATTGTAATCTCACTGTTCTCTAGATTTTCTATACCGATGTTCTTATGCATTGCGTTATGTAGGCTACGGTGAGCGACCTGCATGGAGCTATTCTTAGTGACGTTGTCTTTGTTTCTGGATGA

mRNA sequence

ATGGAATCTCTCACACCTTCATTTCCCTCTCTTTTTTATACTCTTAAATCCCTAGCTGCTGCTGCAGCAACAACAATCAGTACTGCTGTTTACTCTCCGTCTACACTTTGTTCAAGCTATGAAGGTCTGAGAGTATTCATCATCAGTGGCCTTCGAATCAATGATTCGGCTACGGTGAGCGACCTGCATGGAGCTATTCTTAGTGACGTTGTCTTTGTTTCTGGATGA

Coding sequence (CDS)

ATGGAATCTCTCACACCTTCATTTCCCTCTCTTTTTTATACTCTTAAATCCCTAGCTGCTGCTGCAGCAACAACAATCAGTACTGCTGTTTACTCTCCGTCTACACTTTGTTCAAGCTATGAAGGTCTGAGAGTATTCATCATCAGTGGCCTTCGAATCAATGATTCGGCTACGGTGAGCGACCTGCATGGAGCTATTCTTAGTGACGTTGTCTTTGTTTCTGGATGA

Protein sequence

MESLTPSFPSLFYTLKSLAAAAATTISTAVYSPSTLCSSYEGLRVFIISGLRINDSATVSDLHGAILSDVVFVSG*
Homology
[Close]
BLAST of CSPI04G14600 vs. ExPASy TrEMBL
Match: A0A0A0L0X2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G295510 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.7e-19
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0 

Query: 1  MESLTPSFPSLFYTLKSLAAAAATTISTAVYSPSTLCSSYEGLRVFIISGLRINDS 57
          MESLTPSFPSLFYTLKSLAAAAATTISTAVYSPSTLCSSYEGLRVFIISGLRINDS
Sbjct: 1  MESLTPSFPSLFYTLKSLAAAAATTISTAVYSPSTLCSSYEGLRVFIISGLRINDS 56

[Close]
BLAST of CSPI04G14600 vs. ExPASy TrEMBL
Match: A0A5D3DJF8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00240 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 4.0e-13
Identity = 48/59 (81.36%), Postives = 52/59 (88.14%), Query Frame = 0 

Query: 1  MESLTPSFPSLFYTLKSL-AAAAATTISTAVYSPSTLCSSYEGLRVFIISGLRINDSAT 59
          MESLTPSFPSLF TL+SL AAAAATTISTAVYS STLC S+EGLRVFI  GLRI+DS +
Sbjct: 1  MESLTPSFPSLFPTLRSLAAAAAATTISTAVYSSSTLCPSHEGLRVFITGGLRIDDSCS 59

[Close]
BLAST of CSPI04G14600 vs. NCBI nr
Match: KGN54247.1 (hypothetical protein Csa_017878 [Cucumis sativus])

HSP 1 Score: 104.8 bits (260), Expect = 3.4e-19
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0 

Query: 1  MESLTPSFPSLFYTLKSLAAAAATTISTAVYSPSTLCSSYEGLRVFIISGLRINDS 57
          MESLTPSFPSLFYTLKSLAAAAATTISTAVYSPSTLCSSYEGLRVFIISGLRINDS
Sbjct: 1  MESLTPSFPSLFYTLKSLAAAAATTISTAVYSPSTLCSSYEGLRVFIISGLRINDS 56

[Close]
BLAST of CSPI04G14600 vs. NCBI nr
Match: TYK23520.1 (hypothetical protein E5676_scaffold500G00240 [Cucumis melo var. makuwa])

HSP 1 Score: 83.6 bits (205), Expect = 8.2e-13
Identity = 48/59 (81.36%), Postives = 52/59 (88.14%), Query Frame = 0 

Query: 1  MESLTPSFPSLFYTLKSL-AAAAATTISTAVYSPSTLCSSYEGLRVFIISGLRINDSAT 59
          MESLTPSFPSLF TL+SL AAAAATTISTAVYS STLC S+EGLRVFI  GLRI+DS +
Sbjct: 1  MESLTPSFPSLFPTLRSLAAAAAATTISTAVYSSSTLCPSHEGLRVFITGGLRIDDSCS 59

The following BLAST results are available for this feature:
BLAST of CSPI04G14600 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI04G14600 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0X21.7e-19100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G295510 PE=4 SV=1[more]
A0A5D3DJF84.0e-1381.36Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of CSPI04G14600 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54247.13.4e-19100.00hypothetical protein Csa_017878 [Cucumis sativus][more]
TYK23520.18.2e-1381.36hypothetical protein E5676_scaffold500G00240 [Cucumis melo var. makuwa][more]
BLAST of CSPI04G14600 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G14600.1CSPI04G14600.1mRNA