CSPI04G14020 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G14020
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr4: 11893756 .. 11893935 (+)
RNA-Seq Expression	CSPI04G14020
Synteny	CSPI04G14020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAAAACTACTGAACCAACAAGGTCCAAAGCAACGAAGGGCAGGCTGCCTCCTAAAAGAGGAAGTATCAAACTAAAAATAATATCCAAGCTCTATGCTGTGGTGATTGGCTTTGCATCAAAATTAGCAGGACGACAGAACAAAAAGAGTGTAGATCAAGCAACAACAGAAGAACCA

mRNA sequence

ATGGACAAAACTACTGAACCAACAAGGTCCAAAGCAACGAAGGGCAGGCTGCCTCCTAAAAGAGGAAGTATCAAACTAAAAATAATATCCAAGCTCTATGCTGTGGTGATTGGCTTTGCATCAAAATTAGCAGGACGACAGAACAAAAAGAGTGTAGATCAAGCAACAACAGAAGAACCA

Coding sequence (CDS)

ATGGACAAAACTACTGAACCAACAAGGTCCAAAGCAACGAAGGGCAGGCTGCCTCCTAAAAGAGGAAGTATCAAACTAAAAATAATATCCAAGCTCTATGCTGTGGTGATTGGCTTTGCATCAAAATTAGCAGGACGACAGAACAAAAAGAGTGTAGATCAAGCAACAACAGAAGAACCA

Protein sequence

MDKTTEPTRSKATKGRLPPKRGSIKLKIISKLYAVVIGFASKLAGRQNKKSVDQATTEEP

Homology

[Close]

BLAST of CSPI04G14020 vs. ExPASy TrEMBL
Match: A0A0A0KZD8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G292990 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 5.7e-23
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MDKTTEPTRSKATKGRLPPKRGSIKLKIISKLYAVVIGFASKLAGRQNKKSVDQATTEEP 60
          MDKTTEPTRSKATKGRLPPKRGSIKLKIISKLYAVVIGFASKLAGRQNKKSVDQATTEEP
Sbjct: 1  MDKTTEPTRSKATKGRLPPKRGSIKLKIISKLYAVVIGFASKLAGRQNKKSVDQATTEEP 60

[Close]

BLAST of CSPI04G14020 vs. NCBI nr
Match: KGN54189.1 (hypothetical protein Csa_018116 [Cucumis sativus])

HSP 1 Score: 115.9 bits (289), Expect = 1.2e-22
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MDKTTEPTRSKATKGRLPPKRGSIKLKIISKLYAVVIGFASKLAGRQNKKSVDQATTEEP 60
          MDKTTEPTRSKATKGRLPPKRGSIKLKIISKLYAVVIGFASKLAGRQNKKSVDQATTEEP
Sbjct: 1  MDKTTEPTRSKATKGRLPPKRGSIKLKIISKLYAVVIGFASKLAGRQNKKSVDQATTEEP 60

The following BLAST results are available for this feature:

BLAST of CSPI04G14020 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI04G14020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZD8	5.7e-23	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G292990 PE=4 SV=1	[more]

BLAST of CSPI04G14020 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54189.1	1.2e-22	100.00	hypothetical protein Csa_018116 [Cucumis sativus]	[more]

BLAST of CSPI04G14020 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G14020.1	CSPI04G14020.1	mRNA