CSPI04G13930 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G13930
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	chaperonin-like RbcX protein 2, chloroplastic
Location	Chr4: 11832506 .. 11834744 (-)
RNA-Seq Expression	CSPI04G13930
Synteny	CSPI04G13930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGGAATGTTGCATGGATGATTTAAGACCTCAGAAAAATGTTTGGTTTACGTTGGCAGTTGACATGCATTTTCTTTTTGTACCAAAGAAAAAAGGAAATTAACGACAAACTTCCAACAATATGAAACCTTTCTTTCATCCTCTTTCTTGTACAATTCTAAATTGAATTCTCAAAGTTTGATCAGTTTCTTACGATAGCTGAATCTTTGACCCAATCTCCTATTCTCTCCCACTTTTCCTTTATATTCACTTCTTTCTCTTTCAATTCCTTTATTCCCACTTCATATATCCTCCTTCTCTCAACGGTTGGCTTGTGATCTTGGAATCTTTTTTTCCAAAATGGTGGGAGCCTTGTTTGTTGTTGGTGCACCTGTGGTCGACTCCCTGCCGCCGTGTTTGTCTTTCGACTCGTCGCCGGTTACCAATATGAGTCTTAGAAGTGGTGGGGATTTGGTTTTGCAAAGGAAATCCAAGGCTAAGAGTTATTTGACCGTGTCTAAATCGGTGGACTTGAGAAGTTCGTTTGTCAATCTTGGTGACGAGTGGCAGCTCTCGGCCGGTGGTGGCCGTCAGAGTAAGAGGAACCAACGAAGGAATCGGAGGCTTGTTGTTGTCAATGAATTTGCAGGGCAGTATGAGGATAGTTTTGATGATGTGAAAATGGTAGGGATATTATATCACTCTCTTCTTCAATGCAAAATGCTTTGATCTGTCTTCTAATTTTTGGTTTAATTTAAAAAAAAATAAACGAAATGGTTACCAAACGGCATGAATTGTTATCAACTACTTGTCTCTTCTCCTGCTTCCTGAATGATCAATGTTCTTGGCACTTGGATTCTGCATTTAAAAAGGGAAGAAAAAACTGTTTAAGCTTACCAGAGGCTTTCTATTTGCAGCAAATACAGAATTATTTCACATACAAAGCTGTGAAGACAGTTTTGAATCAGCTTTATGAGATGAACCCAACACAGTACAGATGGTTTTATAAGTAAGTGAAGCCTTTTGCTTTAGTTTTTAAGAACTCATTATGACTGCCAATGTAAATGCTTATTCTGTGGAAATCAAAATAGTGTTTTTAGAACATTATTTCATTTCCCCATCTAATCTTGCATTTCACCTTTTTCTACATCAACAGCTTTGTTGTAAATCACAAGCCTGGGGAAGGGAAGCGTTTCATTCGAACTCTTGTAAAGGTAATATACCAATCTCTAAAAGATTGTAAACCTAAACCTAAACCTAAACATAACTCACTTGATTAAGACACAGTATCATCAACCAGCACATTAGGGGTTCAAATCCCTATGCATTCACGTGTTGAACTCAAAAGGGAAGGAAAAAGAAGTCTAAAGAGTCTATTTGAATTACATGAACGATATGTAAATGATTGAGTACTGAAACAAATTGGATGATTACCAGGAGAAGCAAGATTTGGCTGAGAGGGTGATGATAACAAGGCTTCATCTCTATAACAAATGGGTTAAGGTAAGAACAAACTTGGTATTTTGAGGGGTTTTTATTATTATTATTATTATATTGAATTGTGATTTGGTGTTGTTGGATAGAAATGTGATCATGCTGAAATATACAAAGGGATATCTGATGAGAACTTGGAGTTGATGCGAGAGAGGCTAATGGAGACTGTGATATGGCCTTCCGACGACTAGAGCTTTTAGGAGATTGGCAGACTAGGAGTTAGAAGATTTTTTTATCTTATTTATTTTCCTTTAGTGTCGACCAATCTGGTCCTGTTCCTAATTAGTTGTCATTCACATTCATATTATTTTCCCCCAACTAATAACAATTCTTACATCCACTACTACAAAAAAAATCAATGTAAATACTTTCAACATCTTATACCATGTTAAAAGTATCAATGTCATTGAATATGTTTCTATAAACAAAAGGCATTTTGGAGATTAGTCCAACCGTTTCATATCTGTTGTAATTGCAGTAATCAAACCTCACAGGATATCTCATTTTGTGCTAATCTAGGTACGATTCTATTGGTTTAGGCCTAAACCTTTGACTAAAAGGTCATAGGTTCGAAAATCACGAATCCCATATGTTGTTGAACTCAAAAACATATAATAATGTTTCACTTTCTGTGTCAACACCTTTCCAGTTGAAAGAGTAATAATTTCTCAATTTCTAAAGCAAAATCACGAAGGTGACATTTACTATCTTGAAGAGAAATTTATGCAGATCCACATCCACCACCATCATGAAGATGATAAAGGCGG

mRNA sequence

GGGGAATGTTGCATGGATGATTTAAGACCTCAGAAAAATGTTTGGTTTACGTTGGCAGTTGACATGCATTTTCTTTTTGTACCAAAGAAAAAAGGAAATTAACGACAAACTTCCAACAATATGAAACCTTTCTTTCATCCTCTTTCTTGTACAATTCTAAATTGAATTCTCAAAGTTTGATCAGTTTCTTACGATAGCTGAATCTTTGACCCAATCTCCTATTCTCTCCCACTTTTCCTTTATATTCACTTCTTTCTCTTTCAATTCCTTTATTCCCACTTCATATATCCTCCTTCTCTCAACGGTTGGCTTGTGATCTTGGAATCTTTTTTTCCAAAATGGTGGGAGCCTTGTTTGTTGTTGGTGCACCTGTGGTCGACTCCCTGCCGCCGTGTTTGTCTTTCGACTCGTCGCCGGTTACCAATATGAGTCTTAGAAGTGGTGGGGATTTGGTTTTGCAAAGGAAATCCAAGGCTAAGAGTTATTTGACCGTGTCTAAATCGGTGGACTTGAGAAGTTCGTTTGTCAATCTTGGTGACGAGTGGCAGCTCTCGGCCGGTGGTGGCCGTCAGAGTAAGAGGAACCAACGAAGGAATCGGAGGCTTGTTGTTGTCAATGAATTTGCAGGGCAGTATGAGGATAGTTTTGATGATGTGAAAATGCAAATACAGAATTATTTCACATACAAAGCTGTGAAGACAGTTTTGAATCAGCTTTATGAGATGAACCCAACACAGTACAGATGGTTTTATAACTTTGTTGTAAATCACAAGCCTGGGGAAGGGAAGCGTTTCATTCGAACTCTTGTAAAGGAGAAGCAAGATTTGGCTGAGAGGGTGATGATAACAAGGCTTCATCTCTATAACAAATGGGTTAAGAAATGTGATCATGCTGAAATATACAAAGGGATATCTGATGAGAACTTGGAGTTGATGCGAGAGAGGCTAATGGAGACTGTGATATGGCCTTCCGACGACTAGAGCTTTTAGGAGATTGGCAGACTAGGAGTTAGAAGATTTTTTTATCTTATTTATTTTCCTTTAGTGTCGACCAATCTGGTCCTGTTCCTAATTAGTTGTCATTCACATTCATATTATTTTCCCCCAACTAATAACAATTCTTACATCCACTACTACAAAAAAAATCAATGTAAATACTTTCAACATCTTATACCATGTTAAAAGTATCAATGTCATTGAATATGTTTCTATAAACAAAAGGCATTTTGGAGATTAGTCCAACCGTTTCATATCTGTTGTAATTGCAGTAATCAAACCTCACAGGATATCTCATTTTGTGCTAATCTAGGTACGATTCTATTGGTTTAGGCCTAAACCTTTGACTAAAAGGTCATAGGTTCGAAAATCACGAATCCCATATGTTGTTGAACTCAAAAACATATAATAATGTTTCACTTTCTGTGTCAACACCTTTCCAGTTGAAAGAGTAATAATTTCTCAATTTCTAAAGCAAAATCACGAAGGTGACATTTACTATCTTGAAGAGAAATTTATGCAGATCCACATCCACCACCATCATGAAGATGATAAAGGCGG

Coding sequence (CDS)

ATGGTGGGAGCCTTGTTTGTTGTTGGTGCACCTGTGGTCGACTCCCTGCCGCCGTGTTTGTCTTTCGACTCGTCGCCGGTTACCAATATGAGTCTTAGAAGTGGTGGGGATTTGGTTTTGCAAAGGAAATCCAAGGCTAAGAGTTATTTGACCGTGTCTAAATCGGTGGACTTGAGAAGTTCGTTTGTCAATCTTGGTGACGAGTGGCAGCTCTCGGCCGGTGGTGGCCGTCAGAGTAAGAGGAACCAACGAAGGAATCGGAGGCTTGTTGTTGTCAATGAATTTGCAGGGCAGTATGAGGATAGTTTTGATGATGTGAAAATGCAAATACAGAATTATTTCACATACAAAGCTGTGAAGACAGTTTTGAATCAGCTTTATGAGATGAACCCAACACAGTACAGATGGTTTTATAACTTTGTTGTAAATCACAAGCCTGGGGAAGGGAAGCGTTTCATTCGAACTCTTGTAAAGGAGAAGCAAGATTTGGCTGAGAGGGTGATGATAACAAGGCTTCATCTCTATAACAAATGGGTTAAGAAATGTGATCATGCTGAAATATACAAAGGGATATCTGATGAGAACTTGGAGTTGATGCGAGAGAGGCTAATGGAGACTGTGATATGGCCTTCCGACGACTAG

Protein sequence

MVGALFVVGAPVVDSLPPCLSFDSSPVTNMSLRSGGDLVLQRKSKAKSYLTVSKSVDLRSSFVNLGDEWQLSAGGGRQSKRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERLMETVIWPSDD*

Homology

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BLAST of CSPI04G13930 vs. ExPASy Swiss-Prot
Match: Q8L9X2 (Chaperonin-like RbcX protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RBCX2 PE=1 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 2.7e-56
Identity = 117/215 (54.42%), Postives = 151/215 (70.23%), Query Frame = 0


Query: 1   MVGALFVVGAPVVD-SLPPCLSFDSSPVTNMSLRSGGDLVLQRKSKAKSYLTVSKSVDLR 60
           MV A FVVG+PV+D S  PCL  D+     +              + K  L  +++++L 
Sbjct: 1   MVSAWFVVGSPVMDSSSSPCLCLDAHTTGTI--------------RRKKILGKARNLELG 60

Query: 61  SSFVNLGDEWQLSAGGGRQSKRNQRRNRRLVVVNE-FAGQYEDSFDDVKMQIQNYFTYKA 120
           SSF      ++LS    R S+   R++++L++VNE  AG Y+D+F DV+ QI NYFTYKA
Sbjct: 61  SSFTGSRIVFRLSP--KRVSRIANRKSKKLLIVNEDVAGNYDDTFGDVQKQIVNYFTYKA 120

Query: 121 VKTVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKW 180
           V+TVL+QLYEMNP QY WFYN ++ ++P +GKRF+R L KE Q+LAERVMITRLHLY KW
Sbjct: 121 VRTVLHQLYEMNPPQYTWFYNHIITNRPTDGKRFLRALGKESQELAERVMITRLHLYGKW 180

Query: 181 VKKCDHAEIYKGISDENLELMRERLMETVIWPSDD 214
           +KKCDH +IY+ ISDENL LMRERLMETVIWPSDD
Sbjct: 181 IKKCDHGKIYQEISDENLALMRERLMETVIWPSDD 199

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BLAST of CSPI04G13930 vs. ExPASy Swiss-Prot
Match: Q44212 (RuBisCO chaperone RbcX OS=Anabaena sp. (strain CA / ATCC 33047) OX=52271 GN=rbcX PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 9.4e-09
Identity = 36/99 (36.36%), Postives = 54/99 (54.55%), Query Frame = 0


Query: 105 DVKMQIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLA 164
           D    +Q+Y TY+A++TVL QL E NP    W +NF    K  +G+++I  L  EK DLA
Sbjct: 9   DTAKTLQSYLTYQALRTVLAQLGETNPPLALWLHNFSAG-KVQDGEKYIEELFLEKPDLA 68

Query: 165 ERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERL 204
            R+M  R H+  + + +     +  GI   N+E  R+ L
Sbjct: 69  LRIMTVREHIAEE-IAEFLPEMVVTGIQQANMEKRRQHL 105

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BLAST of CSPI04G13930 vs. ExPASy Swiss-Prot
Match: O86418 (RuBisCO chaperone RbcX OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rbcX PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.7e-08
Identity = 35/99 (35.35%), Postives = 54/99 (54.55%), Query Frame = 0


Query: 105 DVKMQIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLA 164
           D    +Q+Y TY+A+ TVL QL E NP    W + F V  K  +G+ +++ L +E+ DLA
Sbjct: 9   DTAKTLQSYLTYQALMTVLAQLGETNPPLALWLHTFSVG-KVQDGEAYVKELFREQPDLA 68

Query: 165 ERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERL 204
            R+M  R H+  + V +     +  GI   N+E  R+ L
Sbjct: 69  LRIMTVREHIAEE-VAEFLPEMVRSGIQQANMEQRRQHL 105

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BLAST of CSPI04G13930 vs. ExPASy Swiss-Prot
Match: Q8DIS6 (RuBisCO chaperone RbcX OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=rbcX PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 4.4e-06
Identity = 23/63 (36.51%), Postives = 38/63 (60.32%), Query Frame = 0


Query: 112 NYFTYKAVKTVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITR 171
           +Y TY+AV+TV+ QL E +P +  W + F       +G+R++  L +E+ DL  R++  R
Sbjct: 16  SYLTYQAVRTVIGQLAETDPPRSLWLHQFTSQESIQDGERYLEALFREQPDLGFRILTVR 75

Query: 172 LHL 175
            HL
Sbjct: 76  EHL 78

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BLAST of CSPI04G13930 vs. ExPASy TrEMBL
Match: A0A0A0KX19 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G291920 PE=4 SV=1)

HSP 1 Score: 429.5 bits (1103), Expect = 8.3e-117
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 1   MVGALFVVGAPVVDSLPPCLSFDSSPVTNMSLRSGGDLVLQRKSKAKSYLTVSKSVDLRS 60
           MVGALFVVGAPVVDSLPPCLSFDSSPVTNMSLRSGGDLVLQRKSKAKSYLTVSKSVDLRS
Sbjct: 1   MVGALFVVGAPVVDSLPPCLSFDSSPVTNMSLRSGGDLVLQRKSKAKSYLTVSKSVDLRS 60

Query: 61  SFVNLGDEWQLSAGGGRQSKRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQNYFTYKAVK 120
           SFVNLGDEWQLSAGGGRQSKRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQNYFTYKAVK
Sbjct: 61  SFVNLGDEWQLSAGGGRQSKRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQNYFTYKAVK 120

Query: 121 TVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK 180
           TVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK
Sbjct: 121 TVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK 180

Query: 181 KCDHAEIYKGISDENLELMRERLMETVIWPSDD 214
           KCDHAEIYKGISDENLELMRERLMETVIWPSDD
Sbjct: 181 KCDHAEIYKGISDENLELMRERLMETVIWPSDD 213

[Close]

BLAST of CSPI04G13930 vs. ExPASy TrEMBL
Match: A0A5D3BAI6 (RcbX domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G001050 PE=4 SV=1)

HSP 1 Score: 411.4 bits (1056), Expect = 2.3e-111
Identity = 203/213 (95.31%), Postives = 206/213 (96.71%), Query Frame = 0


Query: 1   MVGALFVVGAPVVDSLPPCLSFDSSPVTNMSLRSGGDLVLQRKSKAKSYLTVSKSVDLRS 60
           MVGALFVVGAPV+DS PPC SFDSSPVTNMSLRSGGDLVLQRKSK KSY TVSKSVDLRS
Sbjct: 1   MVGALFVVGAPVIDSPPPCFSFDSSPVTNMSLRSGGDLVLQRKSKTKSYSTVSKSVDLRS 60

Query: 61  SFVNLGDEWQLSAGGGRQSKRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQNYFTYKAVK 120
           SFVN GDEWQLSAGG RQS+RNQRRNRRLV+VNEFAGQYEDSFDDVKMQIQNYFTYKAVK
Sbjct: 61  SFVNFGDEWQLSAGGCRQSRRNQRRNRRLVIVNEFAGQYEDSFDDVKMQIQNYFTYKAVK 120

Query: 121 TVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK 180
           TVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK
Sbjct: 121 TVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK 180

Query: 181 KCDHAEIYKGISDENLELMRERLMETVIWPSDD 214
           KCDHAEIYK ISDENLELMRERLMETVIWPSDD
Sbjct: 181 KCDHAEIYKEISDENLELMRERLMETVIWPSDD 213

[Close]

BLAST of CSPI04G13930 vs. ExPASy TrEMBL
Match: A0A1S3BNA7 (uncharacterized protein LOC103491510 OS=Cucumis melo OX=3656 GN=LOC103491510 PE=4 SV=1)

HSP 1 Score: 411.4 bits (1056), Expect = 2.3e-111
Identity = 203/213 (95.31%), Postives = 206/213 (96.71%), Query Frame = 0


Query: 1   MVGALFVVGAPVVDSLPPCLSFDSSPVTNMSLRSGGDLVLQRKSKAKSYLTVSKSVDLRS 60
           MVGALFVVGAPV+DS PPC SFDSSPVTNMSLRSGGDLVLQRKSK KSY TVSKSVDLRS
Sbjct: 1   MVGALFVVGAPVIDSPPPCFSFDSSPVTNMSLRSGGDLVLQRKSKTKSYSTVSKSVDLRS 60

Query: 61  SFVNLGDEWQLSAGGGRQSKRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQNYFTYKAVK 120
           SFVN GDEWQLSAGG RQS+RNQRRNRRLV+VNEFAGQYEDSFDDVKMQIQNYFTYKAVK
Sbjct: 61  SFVNFGDEWQLSAGGCRQSRRNQRRNRRLVIVNEFAGQYEDSFDDVKMQIQNYFTYKAVK 120

Query: 121 TVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK 180
           TVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK
Sbjct: 121 TVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK 180

Query: 181 KCDHAEIYKGISDENLELMRERLMETVIWPSDD 214
           KCDHAEIYK ISDENLELMRERLMETVIWPSDD
Sbjct: 181 KCDHAEIYKEISDENLELMRERLMETVIWPSDD 213

[Close]

BLAST of CSPI04G13930 vs. ExPASy TrEMBL
Match: A0A5A7TJ10 (RcbX domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00620 PE=4 SV=1)

HSP 1 Score: 409.8 bits (1052), Expect = 6.8e-111
Identity = 202/213 (94.84%), Postives = 206/213 (96.71%), Query Frame = 0


Query: 1   MVGALFVVGAPVVDSLPPCLSFDSSPVTNMSLRSGGDLVLQRKSKAKSYLTVSKSVDLRS 60
           MVGALFVVGAPV+DS PPC SFDSSPVTNMSLRSGGDLVLQRKSK KSY TVSKSVDLRS
Sbjct: 1   MVGALFVVGAPVIDSPPPCFSFDSSPVTNMSLRSGGDLVLQRKSKTKSYSTVSKSVDLRS 60

Query: 61  SFVNLGDEWQLSAGGGRQSKRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQNYFTYKAVK 120
           SFVN GDEWQLSAGG R+S+RNQRRNRRLV+VNEFAGQYEDSFDDVKMQIQNYFTYKAVK
Sbjct: 61  SFVNFGDEWQLSAGGCRRSRRNQRRNRRLVIVNEFAGQYEDSFDDVKMQIQNYFTYKAVK 120

Query: 121 TVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK 180
           TVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK
Sbjct: 121 TVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK 180

Query: 181 KCDHAEIYKGISDENLELMRERLMETVIWPSDD 214
           KCDHAEIYK ISDENLELMRERLMETVIWPSDD
Sbjct: 181 KCDHAEIYKEISDENLELMRERLMETVIWPSDD 213

[Close]

BLAST of CSPI04G13930 vs. ExPASy TrEMBL
Match: A0A6J1FUS7 (chaperonin-like RbcX protein 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111448989 PE=4 SV=1)

HSP 1 Score: 372.1 bits (954), Expect = 1.6e-99
Identity = 187/214 (87.38%), Postives = 196/214 (91.59%), Query Frame = 0


Query: 1   MVGALFVVGAPVVDSLP-PCLSFDSSPVTNMSLRSGGDLVLQRKSKAKSYLTVSKSVDLR 60
           MVGAL V GAPV+DS P PCL  DSSPVTNMSLRS GDLVL R+SKAKS+L VS+ VDLR
Sbjct: 1   MVGALCVAGAPVIDSPPCPCLCLDSSPVTNMSLRSRGDLVLPRRSKAKSHLAVSRLVDLR 60

Query: 61  SSFVNLGDEWQLSAGGGRQSKRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQNYFTYKAV 120
           SSFVN G EWQLSA GG + +RNQRRNRRLVVVNEFAGQYE+SFDDVKMQI NYFTYKAV
Sbjct: 61  SSFVNSGSEWQLSASGGHRRRRNQRRNRRLVVVNEFAGQYEESFDDVKMQILNYFTYKAV 120

Query: 121 KTVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWV 180
           KTVLNQLYEMNPTQYRWFY+FVVNHKP +GKRFIRTLVKEKQDLAERVMITRLHLYNKWV
Sbjct: 121 KTVLNQLYEMNPTQYRWFYDFVVNHKPRDGKRFIRTLVKEKQDLAERVMITRLHLYNKWV 180

Query: 181 KKCDHAEIYKGISDENLELMRERLMETVIWPSDD 214
           KKCDHAEIYK ISDENLELMRERLMETVIWPSDD
Sbjct: 181 KKCDHAEIYKEISDENLELMRERLMETVIWPSDD 214

[Close]

BLAST of CSPI04G13930 vs. NCBI nr
Match: XP_004142113.1 (chaperonin-like RbcX protein 2, chloroplastic [Cucumis sativus] >KGN54180.1 hypothetical protein Csa_018190 [Cucumis sativus])

HSP 1 Score: 429.5 bits (1103), Expect = 1.7e-116
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 1   MVGALFVVGAPVVDSLPPCLSFDSSPVTNMSLRSGGDLVLQRKSKAKSYLTVSKSVDLRS 60
           MVGALFVVGAPVVDSLPPCLSFDSSPVTNMSLRSGGDLVLQRKSKAKSYLTVSKSVDLRS
Sbjct: 1   MVGALFVVGAPVVDSLPPCLSFDSSPVTNMSLRSGGDLVLQRKSKAKSYLTVSKSVDLRS 60

Query: 61  SFVNLGDEWQLSAGGGRQSKRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQNYFTYKAVK 120
           SFVNLGDEWQLSAGGGRQSKRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQNYFTYKAVK
Sbjct: 61  SFVNLGDEWQLSAGGGRQSKRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQNYFTYKAVK 120

Query: 121 TVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK 180
           TVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK
Sbjct: 121 TVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK 180

Query: 181 KCDHAEIYKGISDENLELMRERLMETVIWPSDD 214
           KCDHAEIYKGISDENLELMRERLMETVIWPSDD
Sbjct: 181 KCDHAEIYKGISDENLELMRERLMETVIWPSDD 213

[Close]

BLAST of CSPI04G13930 vs. NCBI nr
Match: XP_008449714.1 (PREDICTED: uncharacterized protein LOC103491510 [Cucumis melo] >TYJ96137.1 RcbX domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 411.4 bits (1056), Expect = 4.8e-111
Identity = 203/213 (95.31%), Postives = 206/213 (96.71%), Query Frame = 0


Query: 1   MVGALFVVGAPVVDSLPPCLSFDSSPVTNMSLRSGGDLVLQRKSKAKSYLTVSKSVDLRS 60
           MVGALFVVGAPV+DS PPC SFDSSPVTNMSLRSGGDLVLQRKSK KSY TVSKSVDLRS
Sbjct: 1   MVGALFVVGAPVIDSPPPCFSFDSSPVTNMSLRSGGDLVLQRKSKTKSYSTVSKSVDLRS 60

Query: 61  SFVNLGDEWQLSAGGGRQSKRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQNYFTYKAVK 120
           SFVN GDEWQLSAGG RQS+RNQRRNRRLV+VNEFAGQYEDSFDDVKMQIQNYFTYKAVK
Sbjct: 61  SFVNFGDEWQLSAGGCRQSRRNQRRNRRLVIVNEFAGQYEDSFDDVKMQIQNYFTYKAVK 120

Query: 121 TVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK 180
           TVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK
Sbjct: 121 TVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK 180

Query: 181 KCDHAEIYKGISDENLELMRERLMETVIWPSDD 214
           KCDHAEIYK ISDENLELMRERLMETVIWPSDD
Sbjct: 181 KCDHAEIYKEISDENLELMRERLMETVIWPSDD 213

[Close]

BLAST of CSPI04G13930 vs. NCBI nr
Match: KAA0041415.1 (RcbX domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 409.8 bits (1052), Expect = 1.4e-110
Identity = 202/213 (94.84%), Postives = 206/213 (96.71%), Query Frame = 0


Query: 1   MVGALFVVGAPVVDSLPPCLSFDSSPVTNMSLRSGGDLVLQRKSKAKSYLTVSKSVDLRS 60
           MVGALFVVGAPV+DS PPC SFDSSPVTNMSLRSGGDLVLQRKSK KSY TVSKSVDLRS
Sbjct: 1   MVGALFVVGAPVIDSPPPCFSFDSSPVTNMSLRSGGDLVLQRKSKTKSYSTVSKSVDLRS 60

Query: 61  SFVNLGDEWQLSAGGGRQSKRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQNYFTYKAVK 120
           SFVN GDEWQLSAGG R+S+RNQRRNRRLV+VNEFAGQYEDSFDDVKMQIQNYFTYKAVK
Sbjct: 61  SFVNFGDEWQLSAGGCRRSRRNQRRNRRLVIVNEFAGQYEDSFDDVKMQIQNYFTYKAVK 120

Query: 121 TVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK 180
           TVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK
Sbjct: 121 TVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK 180

Query: 181 KCDHAEIYKGISDENLELMRERLMETVIWPSDD 214
           KCDHAEIYK ISDENLELMRERLMETVIWPSDD
Sbjct: 181 KCDHAEIYKEISDENLELMRERLMETVIWPSDD 213

[Close]

BLAST of CSPI04G13930 vs. NCBI nr
Match: XP_023512052.1 (chaperonin-like RbcX protein 2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 375.2 bits (962), Expect = 3.8e-100
Identity = 188/214 (87.85%), Postives = 197/214 (92.06%), Query Frame = 0


Query: 1   MVGALFVVGAPVVDSLP-PCLSFDSSPVTNMSLRSGGDLVLQRKSKAKSYLTVSKSVDLR 60
           MVGALFV GAPV+DS P PCL  DSSPVTNMSLRS GDLVL R+SKAKS+L VS+ VDLR
Sbjct: 1   MVGALFVAGAPVIDSPPCPCLCLDSSPVTNMSLRSRGDLVLPRRSKAKSHLAVSRLVDLR 60

Query: 61  SSFVNLGDEWQLSAGGGRQSKRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQNYFTYKAV 120
           SSFVN G EWQLSA GG + +RNQRRNRRLVVVNEFAGQYE+SFDDVKMQI NYFTYKAV
Sbjct: 61  SSFVNSGSEWQLSASGGHRRRRNQRRNRRLVVVNEFAGQYEESFDDVKMQILNYFTYKAV 120

Query: 121 KTVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWV 180
           KTVLNQLYEMNPTQYRWFY+FVVNHKP +GKRFIRTLVKEKQDLAERVMITRLHLYNKWV
Sbjct: 121 KTVLNQLYEMNPTQYRWFYDFVVNHKPRDGKRFIRTLVKEKQDLAERVMITRLHLYNKWV 180

Query: 181 KKCDHAEIYKGISDENLELMRERLMETVIWPSDD 214
           KKCDHAEIYK ISDENLELMRERLMETVIWPSDD
Sbjct: 181 KKCDHAEIYKEISDENLELMRERLMETVIWPSDD 214

[Close]

BLAST of CSPI04G13930 vs. NCBI nr
Match: XP_038902700.1 (chaperonin-like RbcX protein 2, chloroplastic [Benincasa hispida])

HSP 1 Score: 373.2 bits (957), Expect = 1.5e-99
Identity = 192/214 (89.72%), Postives = 197/214 (92.06%), Query Frame = 0


Query: 1   MVGALFVVGAPVVDSLP-PCLSFDSSPVTNMSLRSGGDLVLQRKSKAKSYLTVSKSVDLR 60
           MVGALFVVGAPVVDS P P L  DSSPVT  SLRSGGDLVLQRKS   S+L VSKSVDLR
Sbjct: 1   MVGALFVVGAPVVDSPPCPSLCSDSSPVTITSLRSGGDLVLQRKS---SHLAVSKSVDLR 60

Query: 61  SSFVNLGDEWQLSAGGGRQSKRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQNYFTYKAV 120
           SSFVN   EW+LSA GG +S+RNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQNYFTYKAV
Sbjct: 61  SSFVNSAGEWRLSASGGNRSRRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQNYFTYKAV 120

Query: 121 KTVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWV 180
           KTVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWV
Sbjct: 121 KTVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWV 180

Query: 181 KKCDHAEIYKGISDENLELMRERLMETVIWPSDD 214
           KKCDHAE+YK ISDENLELMRERLMETVIWPSDD
Sbjct: 181 KKCDHAEMYKEISDENLELMRERLMETVIWPSDD 211

[Close]

BLAST of CSPI04G13930 vs. TAIR 10
Match: AT5G19855.1 (Chaperonin-like RbcX protein )

HSP 1 Score: 219.9 bits (559), Expect = 1.9e-57
Identity = 117/215 (54.42%), Postives = 151/215 (70.23%), Query Frame = 0


Query: 1   MVGALFVVGAPVVD-SLPPCLSFDSSPVTNMSLRSGGDLVLQRKSKAKSYLTVSKSVDLR 60
           MV A FVVG+PV+D S  PCL  D+     +              + K  L  +++++L 
Sbjct: 1   MVSAWFVVGSPVMDSSSSPCLCLDAHTTGTI--------------RRKKILGKARNLELG 60

Query: 61  SSFVNLGDEWQLSAGGGRQSKRNQRRNRRLVVVNE-FAGQYEDSFDDVKMQIQNYFTYKA 120
           SSF      ++LS    R S+   R++++L++VNE  AG Y+D+F DV+ QI NYFTYKA
Sbjct: 61  SSFTGSRIVFRLSP--KRVSRIANRKSKKLLIVNEDVAGNYDDTFGDVQKQIVNYFTYKA 120

Query: 121 VKTVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKW 180
           V+TVL+QLYEMNP QY WFYN ++ ++P +GKRF+R L KE Q+LAERVMITRLHLY KW
Sbjct: 121 VRTVLHQLYEMNPPQYTWFYNHIITNRPTDGKRFLRALGKESQELAERVMITRLHLYGKW 180

Query: 181 VKKCDHAEIYKGISDENLELMRERLMETVIWPSDD 214
           +KKCDH +IY+ ISDENL LMRERLMETVIWPSDD
Sbjct: 181 IKKCDHGKIYQEISDENLALMRERLMETVIWPSDD 199

The following BLAST results are available for this feature:

BLAST of CSPI04G13930 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L9X2	2.7e-56	54.42	Chaperonin-like RbcX protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q44212	9.4e-09	36.36	RuBisCO chaperone RbcX OS=Anabaena sp. (strain CA / ATCC 33047) OX=52271 GN=rbcX...	[more]
O86418	4.7e-08	35.35	RuBisCO chaperone RbcX OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) O...	[more]
Q8DIS6	4.4e-06	36.51	RuBisCO chaperone RbcX OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 ...	[more]

BLAST of CSPI04G13930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KX19	8.3e-117	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G291920 PE=4 SV=1	[more]
A0A5D3BAI6	2.3e-111	95.31	RcbX domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3BNA7	2.3e-111	95.31	uncharacterized protein LOC103491510 OS=Cucumis melo OX=3656 GN=LOC103491510 PE=...	[more]
A0A5A7TJ10	6.8e-111	94.84	RcbX domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A6J1FUS7	1.6e-99	87.38	chaperonin-like RbcX protein 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of CSPI04G13930 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004142113.1	1.7e-116	100.00	chaperonin-like RbcX protein 2, chloroplastic [Cucumis sativus] >KGN54180.1 hypo...	[more]
XP_008449714.1	4.8e-111	95.31	PREDICTED: uncharacterized protein LOC103491510 [Cucumis melo] >TYJ96137.1 RcbX ...	[more]
KAA0041415.1	1.4e-110	94.84	RcbX domain-containing protein [Cucumis melo var. makuwa]	[more]
XP_023512052.1	3.8e-100	87.85	chaperonin-like RbcX protein 2, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_038902700.1	1.5e-99	89.72	chaperonin-like RbcX protein 2, chloroplastic [Benincasa hispida]	[more]

BLAST of CSPI04G13930 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19855.1	1.9e-57	54.42	Chaperonin-like RbcX protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003435	Chaperonin-like RbcX	PFAM	PF02341	RcbX	coord: 108..206 e-value: 2.6E-20 score: 72.8
IPR003435	Chaperonin-like RbcX	PANTHER	PTHR33791	FAMILY NOT NAMED	coord: 1..213
IPR038052	Chaperonin-like RbcX superfamily	GENE3D	1.10.1200.210		coord: 92..213 e-value: 2.7E-47 score: 161.7
IPR038052	Chaperonin-like RbcX superfamily	SUPERFAMILY	158615	RbcX-like	coord: 98..213
None	No IPR available	PANTHER	PTHR33791:SF1	CHAPERONIN-LIKE RBCX PROTEIN 2, CHLOROPLASTIC	coord: 1..213

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G13930.1	CSPI04G13930.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015977	carbon fixation
biological_process	GO:0015979	photosynthesis
biological_process	GO:0006457	protein folding
biological_process	GO:0110102	ribulose bisphosphate carboxylase complex assembly
molecular_function	GO:0044183	protein folding chaperone