CSPI04G12280 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G12280
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Ty3/gypsy retrotransposon protein
Location	Chr4: 10633899 .. 10634663 (+)
RNA-Seq Expression	CSPI04G12280
Synteny	CSPI04G12280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCAGGAATCATCCGCCCCAGCACAAGCCCCTACTCAAGTCCCGTTCTCCTTGTCAAGAAAAAGGATGGGAGTTGGCGATTCTGCGTGGATTATAGGTCGCTCAATAACATAACGATTCCAGATAAGTTCCCTATCCCAGTTGTGGAAGAACTGTTTGATGAGTTAAATGGTGCCAACTTATTCTCCAAAATAGACCTAAAAGCCGGTTATCATCAACTGAGAATGTGTAGTCAAGATATAGAGAAAATGGCCTTTAGAACTCACGAGGGACATTACGAGTTCTTAGTGATGCCGTTTGGACTCACAAACGCACCAGCAACCTTCCAATCTCTAATGAACTCGATTTTTAGGTCGTATCTGAGAAAGTTTGTCTTAGTTTTCTTTGATGATATACTGGTTTATAGCAGGAACCTAGAGGAACATTGTCAACATATTGAACTAGTGCTGGAAGTATTAAGGGAGCATAAGTTATTTGCTAACCGAAAGAAATGCTGCTTTGCGGGTTCAAGGGTGGAGTATCTGGGACATGTATTGTCGGGAAGAGGAGTAGAAGTCGACCCTGAAAAAATTAGAGCAGTGAAGAAATGGCCAATACCAACAAACGTTCGGGAGGTTAGAGGGTTTCTGGGGCTGACGGGTTATTACCGCCGTTTTGTACAACATTATGGATCCATAGCGGCACCCCTGACTCAGCTGCTGAAGCTCGGAGCATTTAAATGGAATGAAGAAGCACAGGAGGCGTTTGAGAAGCTTCAATGA

mRNA sequence

ATGGCTTCAGGAATCATCCGCCCCAGCACAAGCCCCTACTCAAGTCCCGTTCTCCTTGTCAAGAAAAAGGATGGGAGTTGGCGATTCTGCGTGGATTATAGGTCGCTCAATAACATAACGATTCCAGATAAGTTCCCTATCCCAGTTGTGGAAGAACTGTTTGATGAGTTAAATGGTGCCAACTTATTCTCCAAAATAGACCTAAAAGCCGGTTATCATCAACTGAGAATGTGTAGTCAAGATATAGAGAAAATGGCCTTTAGAACTCACGAGGGACATTACGAGTTCTTAGTGATGCCGTTTGGACTCACAAACGCACCAGCAACCTTCCAATCTCTAATGAACTCGATTTTTAGGTCGTATCTGAGAAAGTTTGTCTTAGTTTTCTTTGATGATATACTGGTTTATAGCAGGAACCTAGAGGAACATTGTCAACATATTGAACTAGTGCTGGAAGTATTAAGGGAGCATAAGTTATTTGCTAACCGAAAGAAATGCTGCTTTGCGGGTTCAAGGGTGGAGTATCTGGGACATGTATTGTCGGGAAGAGGAGTAGAAGTCGACCCTGAAAAAATTAGAGCAGTGAAGAAATGGCCAATACCAACAAACGTTCGGGAGGTTAGAGGGTTTCTGGGGCTGACGGGTTATTACCGCCGTTTTGTACAACATTATGGATCCATAGCGGCACCCCTGACTCAGCTGCTGAAGCTCGGAGCATTTAAATGGAATGAAGAAGCACAGGAGGCGTTTGAGAAGCTTCAATGA

Coding sequence (CDS)

ATGGCTTCAGGAATCATCCGCCCCAGCACAAGCCCCTACTCAAGTCCCGTTCTCCTTGTCAAGAAAAAGGATGGGAGTTGGCGATTCTGCGTGGATTATAGGTCGCTCAATAACATAACGATTCCAGATAAGTTCCCTATCCCAGTTGTGGAAGAACTGTTTGATGAGTTAAATGGTGCCAACTTATTCTCCAAAATAGACCTAAAAGCCGGTTATCATCAACTGAGAATGTGTAGTCAAGATATAGAGAAAATGGCCTTTAGAACTCACGAGGGACATTACGAGTTCTTAGTGATGCCGTTTGGACTCACAAACGCACCAGCAACCTTCCAATCTCTAATGAACTCGATTTTTAGGTCGTATCTGAGAAAGTTTGTCTTAGTTTTCTTTGATGATATACTGGTTTATAGCAGGAACCTAGAGGAACATTGTCAACATATTGAACTAGTGCTGGAAGTATTAAGGGAGCATAAGTTATTTGCTAACCGAAAGAAATGCTGCTTTGCGGGTTCAAGGGTGGAGTATCTGGGACATGTATTGTCGGGAAGAGGAGTAGAAGTCGACCCTGAAAAAATTAGAGCAGTGAAGAAATGGCCAATACCAACAAACGTTCGGGAGGTTAGAGGGTTTCTGGGGCTGACGGGTTATTACCGCCGTTTTGTACAACATTATGGATCCATAGCGGCACCCCTGACTCAGCTGCTGAAGCTCGGAGCATTTAAATGGAATGAAGAAGCACAGGAGGCGTTTGAGAAGCTTCAATGA

Protein sequence

MASGIIRPSTSPYSSPVLLVKKKDGSWRFCVDYRSLNNITIPDKFPIPVVEELFDELNGANLFSKIDLKAGYHQLRMCSQDIEKMAFRTHEGHYEFLVMPFGLTNAPATFQSLMNSIFRSYLRKFVLVFFDDILVYSRNLEEHCQHIELVLEVLREHKLFANRKKCCFAGSRVEYLGHVLSGRGVEVDPEKIRAVKKWPIPTNVREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKLGAFKWNEEAQEAFEKLQ*

Homology

[Close]

BLAST of CSPI04G12280 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 5.5e-64
Identity = 123/258 (47.67%), Postives = 168/258 (65.12%), Query Frame = 0


Query: 4   GIIRPSTSPYSSPVLLV-KKKDGS----WRFCVDYRSLNNITIPDKFPIPVVEELFDELN 63
           GIIR S SPY+SP+ +V KK+D S    +R  +DYR LN IT+ D+ PIP ++E+  +L 
Sbjct: 234 GIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRHPIPNMDEILGKLG 293

Query: 64  GANLFSKIDLKAGYHQLRMCSQDIEKMAFRTHEGHYEFLVMPFGLTNAPATFQSLMNSIF 123
             N F+ IDL  G+HQ+ M  + + K AF T  GHYE+L MPFGL NAPATFQ  MN I 
Sbjct: 294 RCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNAPATFQRCMNDIL 353

Query: 124 RSYLRKFVLVFFDDILVYSRNLEEHCQHIELVLEVLREHKLFANRKKCCFAGSRVEYLGH 183
           R  L K  LV+ DDI+V+S +L+EH Q + LV E L +  L     KC F      +LGH
Sbjct: 354 RPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCEFLKQETTFLGH 413

Query: 184 VLSGRGVEVDPEKIRAVKKWPIPTNVREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLK-- 243
           VL+  G++ +PEKI A++K+PIPT  +E++ FLGLTGYYR+F+ ++  IA P+T+ LK  
Sbjct: 414 VLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTKCLKKN 473

Query: 244 LGAFKWNEEAQEAFEKLQ 255
           +     N E   AF+KL+
Sbjct: 474 MKIDTTNPEYDSAFKKLK 491

[Close]

BLAST of CSPI04G12280 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 8.8e-62
Identity = 117/258 (45.35%), Postives = 162/258 (62.79%), Query Frame = 0


Query: 4   GIIRPSTSPYSSPVLLVKKKD-----GSWRFCVDYRSLNNITIPDKFPIPVVEELFDELN 63
           G+IR S SPY+SP  +V KK        +R  +DYR LN ITIPD++PIP ++E+  +L 
Sbjct: 233 GLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYPIPNMDEILGKLG 292

Query: 64  GANLFSKIDLKAGYHQLRMCSQDIEKMAFRTHEGHYEFLVMPFGLTNAPATFQSLMNSIF 123
               F+ IDL  G+HQ+ M  + I K AF T  GHYE+L MPFGL NAPATFQ  MN+I 
Sbjct: 293 KCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNAPATFQRCMNNIL 352

Query: 124 RSYLRKFVLVFFDDILVYSRNLEEHCQHIELVLEVLREHKLFANRKKCCFAGSRVEYLGH 183
           R  L K  LV+ DDI+++S +L EH   I+LV   L +  L     KC F      +LGH
Sbjct: 353 RPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKCEFLKKEANFLGH 412

Query: 184 VLSGRGVEVDPEKIRAVKKWPIPTNVREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKLG 243
           +++  G++ +P K++A+  +PIPT  +E+R FLGLTGYYR+F+ +Y  IA P+T  LK  
Sbjct: 413 IVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYADIAKPMTSCLKKR 472

Query: 244 AFKWNEEAQ--EAFEKLQ 255
                ++ +  EAFEKL+
Sbjct: 473 TKIDTQKLEYIEAFEKLK 490

[Close]

BLAST of CSPI04G12280 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 1.5e-58
Identity = 104/241 (43.15%), Postives = 158/241 (65.56%), Query Frame = 0


Query: 1   MASGIIRPSTSPYSSPVLLVKKK-----DGSWRFCVDYRSLNNITIPDKFPIPVVEELFD 60
           +  GIIRPS SPY+SP+ +V KK     +  +R  VD++ LN +TIPD +PIP +     
Sbjct: 147 LQDGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYPIPDINATLA 206

Query: 61  ELNGANLFSKIDLKAGYHQLRMCSQDIEKMAFRTHEGHYEFLVMPFGLTNAPATFQSLMN 120
            L  A  F+ +DL +G+HQ+ M   DI K AF T  G YEFL +PFGL NAPA FQ +++
Sbjct: 207 SLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNAPAIFQRMID 266

Query: 121 SIFRSYLRKFVLVFFDDILVYSRNLEEHCQHIELVLEVLREHKLFANRKKCCFAGSRVEY 180
            I R ++ K   V+ DDI+V+S + + H +++ LVL  L +  L  N +K  F  ++VE+
Sbjct: 267 DILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKSHFLDTQVEF 326

Query: 181 LGHVLSGRGVEVDPEKIRAVKKWPIPTNVREVRGFLGLTGYYRRFVQHYGSIAAPLTQLL 237
           LG++++  G++ DP+K+RA+ + P PT+V+E++ FLG+T YYR+F+Q Y  +A PLT L 
Sbjct: 327 LGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAKVAKPLTNLT 386

[Close]

BLAST of CSPI04G12280 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 223.8 bits (569), Expect = 2.2e-57
Identity = 110/249 (44.18%), Postives = 155/249 (62.25%), Query Frame = 0


Query: 6   IRPSTSPYSSPVLLVKKKDGSWRFCVDYRSLNNITIPDKFPIPVVEELFDELNGANLFSK 65
           I PS SP SSPV+LV KKDG++R CVDYR+LN  TI D FP+P ++ L   +  A +F+ 
Sbjct: 651 IVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTT 710

Query: 66  IDLKAGYHQLRMCSQDIEKMAFRTHEGHYEFLVMPFGLTNAPATFQSLMNSIFRSYLRKF 125
           +DL +GYHQ+ M  +D  K AF T  G YE+ VMPFGL NAP+TF   M   FR    +F
Sbjct: 711 LDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RF 770

Query: 126 VLVFFDDILVYSRNLEEHCQHIELVLEVLREHKLFANRKKCCFAGSRVEYLGHVLSGRGV 185
           V V+ DDIL++S + EEH +H++ VLE L+   L   +KKC FA    E+LG+ +  + +
Sbjct: 771 VNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKI 830

Query: 186 EVDPEKIRAVKKWPIPTNVREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKLGAFKWNEE 245
                K  A++ +P P  V++ + FLG+  YYRRF+ +   IA P+ QL      +W E+
Sbjct: 831 APLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPI-QLFICDKSQWTEK 890

Query: 246 AQEAFEKLQ 255
             +A EKL+
Sbjct: 891 QDKAIEKLK 896

[Close]

BLAST of CSPI04G12280 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 222.6 bits (566), Expect = 5.0e-57
Identity = 109/249 (43.78%), Postives = 155/249 (62.25%), Query Frame = 0


Query: 6   IRPSTSPYSSPVLLVKKKDGSWRFCVDYRSLNNITIPDKFPIPVVEELFDELNGANLFSK 65
           I PS SP SSPV+LV KKDG++R CVDYR+LN  TI D FP+P ++ L   +  A +F+ 
Sbjct: 625 IVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTT 684

Query: 66  IDLKAGYHQLRMCSQDIEKMAFRTHEGHYEFLVMPFGLTNAPATFQSLMNSIFRSYLRKF 125
           +DL +GYHQ+ M  +D  K AF T  G YE+ VMPFGL NAP+TF   M   FR    +F
Sbjct: 685 LDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RF 744

Query: 126 VLVFFDDILVYSRNLEEHCQHIELVLEVLREHKLFANRKKCCFAGSRVEYLGHVLSGRGV 185
           V V+ DDIL++S + EEH +H++ VLE L+   L   +KKC FA    E+LG+ +  + +
Sbjct: 745 VNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKI 804

Query: 186 EVDPEKIRAVKKWPIPTNVREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKLGAFKWNEE 245
                K  A++ +P P  V++ + FLG+  YYRRF+ +   IA P+ QL      +W E+
Sbjct: 805 APLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPI-QLFICDKSQWTEK 864

Query: 246 AQEAFEKLQ 255
             +A +KL+
Sbjct: 865 QDKAIDKLK 870

[Close]

BLAST of CSPI04G12280 vs. ExPASy TrEMBL
Match: A0A5A7SMQ7 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold701G00120 PE=4 SV=1)

HSP 1 Score: 440.3 bits (1131), Expect = 5.6e-120
Identity = 203/254 (79.92%), Postives = 230/254 (90.55%), Query Frame = 0


Query: 1   MASGIIRPSTSPYSSPVLLVKKKDGSWRFCVDYRSLNNITIPDKFPIPVVEELFDELNGA 60
           + SGIIRPS SPYSSPVLLVKKKDGSWRFCVDYR+LNN+T+PDKFPIPVVEELFDEL GA
Sbjct: 656 LVSGIIRPSASPYSSPVLLVKKKDGSWRFCVDYRALNNVTVPDKFPIPVVEELFDELGGA 715

Query: 61  NLFSKIDLKAGYHQLRMCSQDIEKMAFRTHEGHYEFLVMPFGLTNAPATFQSLMNSIFRS 120
           +LF+KIDLKAGYHQ+RM   DIEK AFRTHEGHYEFLVMPFGLTNAPATFQSLMNSIFR 
Sbjct: 716 SLFTKIDLKAGYHQIRMVDGDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNSIFRP 775

Query: 121 YLRKFVLVFFDDILVYSRNLEEHCQHIELVLEVLREHKLFANRKKCCFAGSRVEYLGHVL 180
           YLRKFVLVFFDDIL+YSRN E+H +H+E+V  VLR+H+LFANRKKC F  ++VEYLGH++
Sbjct: 776 YLRKFVLVFFDDILIYSRNWEDHLKHMEIVFLVLRKHELFANRKKCSFGLAKVEYLGHLI 835

Query: 181 SGRGVEVDPEKIRAVKKWPIPTNVREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKLGAF 240
           S +GVEVDPEKI+A+  WP PTNVRE RGFLGLTGYYR+FV HYG++AAPLTQLLK G F
Sbjct: 836 SNKGVEVDPEKIKAITNWPKPTNVRETRGFLGLTGYYRKFVHHYGTLAAPLTQLLKKGGF 895

Query: 241 KWNEEAQEAFEKLQ 255
           KWN EA++AFEKL+
Sbjct: 896 KWNAEAEQAFEKLK 909

[Close]

BLAST of CSPI04G12280 vs. ExPASy TrEMBL
Match: A0A5D3DYS4 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold381G00230 PE=4 SV=1)

HSP 1 Score: 440.3 bits (1131), Expect = 5.6e-120
Identity = 203/254 (79.92%), Postives = 230/254 (90.55%), Query Frame = 0


Query: 1   MASGIIRPSTSPYSSPVLLVKKKDGSWRFCVDYRSLNNITIPDKFPIPVVEELFDELNGA 60
           + SGIIRPS SPYSSPVLLVKKKDGSWRFCVDYR+LNN+T+PDKFPIPVVEELFDEL GA
Sbjct: 656 LVSGIIRPSASPYSSPVLLVKKKDGSWRFCVDYRALNNVTVPDKFPIPVVEELFDELGGA 715

Query: 61  NLFSKIDLKAGYHQLRMCSQDIEKMAFRTHEGHYEFLVMPFGLTNAPATFQSLMNSIFRS 120
           +LF+KIDLKAGYHQ+RM   DIEK AFRTHEGHYEFLVMPFGLTNAPATFQSLMNSIFR 
Sbjct: 716 SLFTKIDLKAGYHQIRMVDGDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNSIFRP 775

Query: 121 YLRKFVLVFFDDILVYSRNLEEHCQHIELVLEVLREHKLFANRKKCCFAGSRVEYLGHVL 180
           YLRKFVLVFFDDIL+YSRN E+H +H+E+V  VLR+H+LFANRKKC F  ++VEYLGH++
Sbjct: 776 YLRKFVLVFFDDILIYSRNWEDHLKHMEIVFLVLRKHELFANRKKCSFGLAKVEYLGHLI 835

Query: 181 SGRGVEVDPEKIRAVKKWPIPTNVREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKLGAF 240
           S +GVEVDPEKI+A+  WP PTNVRE RGFLGLTGYYR+FV HYG++AAPLTQLLK G F
Sbjct: 836 SNKGVEVDPEKIKAITNWPKPTNVRETRGFLGLTGYYRKFVHHYGTLAAPLTQLLKKGGF 895

Query: 241 KWNEEAQEAFEKLQ 255
           KWN EA++AFEKL+
Sbjct: 896 KWNAEAEQAFEKLK 909

[Close]

BLAST of CSPI04G12280 vs. ExPASy TrEMBL
Match: A0A5D3B8Y6 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G00260 PE=4 SV=1)

HSP 1 Score: 440.3 bits (1131), Expect = 5.6e-120
Identity = 203/254 (79.92%), Postives = 230/254 (90.55%), Query Frame = 0


Query: 1   MASGIIRPSTSPYSSPVLLVKKKDGSWRFCVDYRSLNNITIPDKFPIPVVEELFDELNGA 60
           + SGIIRPS SPYSSPVLLVKKKDGSWRFCVDYR+LNN+T+PDKFPIPVVEELFDEL GA
Sbjct: 647 LVSGIIRPSASPYSSPVLLVKKKDGSWRFCVDYRALNNVTVPDKFPIPVVEELFDELGGA 706

Query: 61  NLFSKIDLKAGYHQLRMCSQDIEKMAFRTHEGHYEFLVMPFGLTNAPATFQSLMNSIFRS 120
           +LF+KIDLKAGYHQ+RM   DIEK AFRTHEGHYEFLVMPFGLTNAPATFQSLMNSIFR 
Sbjct: 707 SLFTKIDLKAGYHQIRMVDGDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNSIFRP 766

Query: 121 YLRKFVLVFFDDILVYSRNLEEHCQHIELVLEVLREHKLFANRKKCCFAGSRVEYLGHVL 180
           YLRKFVLVFFDDIL+YSRN E+H +H+E+V  VLR+H+LFANRKKC F  ++VEYLGH++
Sbjct: 767 YLRKFVLVFFDDILIYSRNWEDHLKHMEIVFLVLRKHELFANRKKCSFGLAKVEYLGHLI 826

Query: 181 SGRGVEVDPEKIRAVKKWPIPTNVREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKLGAF 240
           S +GVEVDPEKI+A+  WP PTNVRE RGFLGLTGYYR+FV HYG++AAPLTQLLK G F
Sbjct: 827 SNKGVEVDPEKIKAITNWPKPTNVRETRGFLGLTGYYRKFVHHYGTLAAPLTQLLKKGGF 886

Query: 241 KWNEEAQEAFEKLQ 255
           KWN EA++AFEKL+
Sbjct: 887 KWNAEAEQAFEKLK 900

[Close]

BLAST of CSPI04G12280 vs. ExPASy TrEMBL
Match: A0A5A7TXP9 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G001500 PE=4 SV=1)

HSP 1 Score: 440.3 bits (1131), Expect = 5.6e-120
Identity = 203/254 (79.92%), Postives = 230/254 (90.55%), Query Frame = 0


Query: 1   MASGIIRPSTSPYSSPVLLVKKKDGSWRFCVDYRSLNNITIPDKFPIPVVEELFDELNGA 60
           + SGIIRPS SPYSSPVLLVKKKDGSWRFCVDYR+LNN+T+PDKFPIPVVEELFDEL GA
Sbjct: 656 LVSGIIRPSASPYSSPVLLVKKKDGSWRFCVDYRALNNVTVPDKFPIPVVEELFDELGGA 715

Query: 61  NLFSKIDLKAGYHQLRMCSQDIEKMAFRTHEGHYEFLVMPFGLTNAPATFQSLMNSIFRS 120
           +LF+KIDLKAGYHQ+RM   DIEK AFRTHEGHYEFLVMPFGLTNAPATFQSLMNSIFR 
Sbjct: 716 SLFTKIDLKAGYHQIRMVDGDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNSIFRP 775

Query: 121 YLRKFVLVFFDDILVYSRNLEEHCQHIELVLEVLREHKLFANRKKCCFAGSRVEYLGHVL 180
           YLRKFVLVFFDDIL+YSRN E+H +H+E+V  VLR+H+LFANRKKC F  ++VEYLGH++
Sbjct: 776 YLRKFVLVFFDDILIYSRNWEDHLKHMEIVFLVLRKHELFANRKKCSFGLAKVEYLGHLI 835

Query: 181 SGRGVEVDPEKIRAVKKWPIPTNVREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKLGAF 240
           S +GVEVDPEKI+A+  WP PTNVRE RGFLGLTGYYR+FV HYG++AAPLTQLLK G F
Sbjct: 836 SNKGVEVDPEKIKAITNWPKPTNVRETRGFLGLTGYYRKFVHHYGTLAAPLTQLLKKGGF 895

Query: 241 KWNEEAQEAFEKLQ 255
           KWN EA++AFEKL+
Sbjct: 896 KWNAEAEQAFEKLK 909

[Close]

BLAST of CSPI04G12280 vs. ExPASy TrEMBL
Match: A0A5D3E1V9 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G00560 PE=4 SV=1)

HSP 1 Score: 440.3 bits (1131), Expect = 5.6e-120
Identity = 203/254 (79.92%), Postives = 230/254 (90.55%), Query Frame = 0


Query: 1   MASGIIRPSTSPYSSPVLLVKKKDGSWRFCVDYRSLNNITIPDKFPIPVVEELFDELNGA 60
           + SGIIRPS SPYSSPVLLVKKKDGSWRFCVDYR+LNN+T+PDKFPIPVVEELFDEL GA
Sbjct: 656 LVSGIIRPSASPYSSPVLLVKKKDGSWRFCVDYRALNNVTVPDKFPIPVVEELFDELGGA 715

Query: 61  NLFSKIDLKAGYHQLRMCSQDIEKMAFRTHEGHYEFLVMPFGLTNAPATFQSLMNSIFRS 120
           +LF+KIDLKAGYHQ+RM   DIEK AFRTHEGHYEFLVMPFGLTNAPATFQSLMNSIFR 
Sbjct: 716 SLFTKIDLKAGYHQIRMVDGDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNSIFRP 775

Query: 121 YLRKFVLVFFDDILVYSRNLEEHCQHIELVLEVLREHKLFANRKKCCFAGSRVEYLGHVL 180
           YLRKFVLVFFDDIL+YSRN E+H +H+E+V  VLR+H+LFANRKKC F  ++VEYLGH++
Sbjct: 776 YLRKFVLVFFDDILIYSRNWEDHLKHMEIVFLVLRKHELFANRKKCSFGLAKVEYLGHLI 835

Query: 181 SGRGVEVDPEKIRAVKKWPIPTNVREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKLGAF 240
           S +GVEVDPEKI+A+  WP PTNVRE RGFLGLTGYYR+FV HYG++AAPLTQLLK G F
Sbjct: 836 SNKGVEVDPEKIKAITNWPKPTNVRETRGFLGLTGYYRKFVHHYGTLAAPLTQLLKKGGF 895

Query: 241 KWNEEAQEAFEKLQ 255
           KWN EA++AFEKL+
Sbjct: 896 KWNAEAEQAFEKLK 909

[Close]

BLAST of CSPI04G12280 vs. NCBI nr
Match: KAA0065392.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 440.3 bits (1131), Expect = 1.2e-119
Identity = 203/254 (79.92%), Postives = 230/254 (90.55%), Query Frame = 0


Query: 1   MASGIIRPSTSPYSSPVLLVKKKDGSWRFCVDYRSLNNITIPDKFPIPVVEELFDELNGA 60
           + SGIIRPS SPYSSPVLLVKKKDGSWRFCVDYR+LNN+T+PDKFPIPVVEELFDEL GA
Sbjct: 656 LVSGIIRPSASPYSSPVLLVKKKDGSWRFCVDYRALNNVTVPDKFPIPVVEELFDELGGA 715

Query: 61  NLFSKIDLKAGYHQLRMCSQDIEKMAFRTHEGHYEFLVMPFGLTNAPATFQSLMNSIFRS 120
           +LF+KIDLKAGYHQ+RM   DIEK AFRTHEGHYEFLVMPFGLTNAPATFQSLMNSIFR 
Sbjct: 716 SLFTKIDLKAGYHQIRMVDGDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNSIFRP 775

Query: 121 YLRKFVLVFFDDILVYSRNLEEHCQHIELVLEVLREHKLFANRKKCCFAGSRVEYLGHVL 180
           YLRKFVLVFFDDIL+YSRN E+H +H+E+V  VLR+H+LFANRKKC F  ++VEYLGH++
Sbjct: 776 YLRKFVLVFFDDILIYSRNWEDHLKHMEIVFLVLRKHELFANRKKCSFGLAKVEYLGHLI 835

Query: 181 SGRGVEVDPEKIRAVKKWPIPTNVREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKLGAF 240
           S +GVEVDPEKI+A+  WP PTNVRE RGFLGLTGYYR+FV HYG++AAPLTQLLK G F
Sbjct: 836 SNKGVEVDPEKIKAITNWPKPTNVRETRGFLGLTGYYRKFVHHYGTLAAPLTQLLKKGGF 895

Query: 241 KWNEEAQEAFEKLQ 255
           KWN EA++AFEKL+
Sbjct: 896 KWNAEAEQAFEKLK 909

[Close]

BLAST of CSPI04G12280 vs. NCBI nr
Match: KAA0048423.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 440.3 bits (1131), Expect = 1.2e-119
Identity = 203/254 (79.92%), Postives = 230/254 (90.55%), Query Frame = 0


Query: 1   MASGIIRPSTSPYSSPVLLVKKKDGSWRFCVDYRSLNNITIPDKFPIPVVEELFDELNGA 60
           + SGIIRPS SPYSSPVLLVKKKDGSWRFCVDYR+LNN+T+PDKFPIPVVEELFDEL GA
Sbjct: 656 LVSGIIRPSASPYSSPVLLVKKKDGSWRFCVDYRALNNVTVPDKFPIPVVEELFDELGGA 715

Query: 61  NLFSKIDLKAGYHQLRMCSQDIEKMAFRTHEGHYEFLVMPFGLTNAPATFQSLMNSIFRS 120
           +LF+KIDLKAGYHQ+RM   DIEK AFRTHEGHYEFLVMPFGLTNAPATFQSLMNSIFR 
Sbjct: 716 SLFTKIDLKAGYHQIRMVDGDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNSIFRP 775

Query: 121 YLRKFVLVFFDDILVYSRNLEEHCQHIELVLEVLREHKLFANRKKCCFAGSRVEYLGHVL 180
           YLRKFVLVFFDDIL+YSRN E+H +H+E+V  VLR+H+LFANRKKC F  ++VEYLGH++
Sbjct: 776 YLRKFVLVFFDDILIYSRNWEDHLKHMEIVFLVLRKHELFANRKKCSFGLAKVEYLGHLI 835

Query: 181 SGRGVEVDPEKIRAVKKWPIPTNVREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKLGAF 240
           S +GVEVDPEKI+A+  WP PTNVRE RGFLGLTGYYR+FV HYG++AAPLTQLLK G F
Sbjct: 836 SNKGVEVDPEKIKAITNWPKPTNVRETRGFLGLTGYYRKFVHHYGTLAAPLTQLLKKGGF 895

Query: 241 KWNEEAQEAFEKLQ 255
           KWN EA++AFEKL+
Sbjct: 896 KWNAEAEQAFEKLK 909

[Close]

BLAST of CSPI04G12280 vs. NCBI nr
Match: TYK30083.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 440.3 bits (1131), Expect = 1.2e-119
Identity = 203/254 (79.92%), Postives = 230/254 (90.55%), Query Frame = 0


Query: 1   MASGIIRPSTSPYSSPVLLVKKKDGSWRFCVDYRSLNNITIPDKFPIPVVEELFDELNGA 60
           + SGIIRPS SPYSSPVLLVKKKDGSWRFCVDYR+LNN+T+PDKFPIPVVEELFDEL GA
Sbjct: 656 LVSGIIRPSASPYSSPVLLVKKKDGSWRFCVDYRALNNVTVPDKFPIPVVEELFDELGGA 715

Query: 61  NLFSKIDLKAGYHQLRMCSQDIEKMAFRTHEGHYEFLVMPFGLTNAPATFQSLMNSIFRS 120
           +LF+KIDLKAGYHQ+RM   DIEK AFRTHEGHYEFLVMPFGLTNAPATFQSLMNSIFR 
Sbjct: 716 SLFTKIDLKAGYHQIRMVDGDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNSIFRP 775

Query: 121 YLRKFVLVFFDDILVYSRNLEEHCQHIELVLEVLREHKLFANRKKCCFAGSRVEYLGHVL 180
           YLRKFVLVFFDDIL+YSRN E+H +H+E+V  VLR+H+LFANRKKC F  ++VEYLGH++
Sbjct: 776 YLRKFVLVFFDDILIYSRNWEDHLKHMEIVFLVLRKHELFANRKKCSFGLAKVEYLGHLI 835

Query: 181 SGRGVEVDPEKIRAVKKWPIPTNVREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKLGAF 240
           S +GVEVDPEKI+A+  WP PTNVRE RGFLGLTGYYR+FV HYG++AAPLTQLLK G F
Sbjct: 836 SNKGVEVDPEKIKAITNWPKPTNVRETRGFLGLTGYYRKFVHHYGTLAAPLTQLLKKGGF 895

Query: 241 KWNEEAQEAFEKLQ 255
           KWN EA++AFEKL+
Sbjct: 896 KWNAEAEQAFEKLK 909

[Close]

BLAST of CSPI04G12280 vs. NCBI nr
Match: KAA0032454.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYJ99900.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 440.3 bits (1131), Expect = 1.2e-119
Identity = 203/254 (79.92%), Postives = 230/254 (90.55%), Query Frame = 0


Query: 1   MASGIIRPSTSPYSSPVLLVKKKDGSWRFCVDYRSLNNITIPDKFPIPVVEELFDELNGA 60
           + SGIIRPS SPYSSPVLLVKKKDGSWRFCVDYR+LNN+T+PDKFPIPVVEELFDEL GA
Sbjct: 656 LVSGIIRPSASPYSSPVLLVKKKDGSWRFCVDYRALNNVTVPDKFPIPVVEELFDELGGA 715

Query: 61  NLFSKIDLKAGYHQLRMCSQDIEKMAFRTHEGHYEFLVMPFGLTNAPATFQSLMNSIFRS 120
           +LF+KIDLKAGYHQ+RM   DIEK AFRTHEGHYEFLVMPFGLTNAPATFQSLMNSIFR 
Sbjct: 716 SLFTKIDLKAGYHQIRMVDGDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNSIFRP 775

Query: 121 YLRKFVLVFFDDILVYSRNLEEHCQHIELVLEVLREHKLFANRKKCCFAGSRVEYLGHVL 180
           YLRKFVLVFFDDIL+YSRN E+H +H+E+V  VLR+H+LFANRKKC F  ++VEYLGH++
Sbjct: 776 YLRKFVLVFFDDILIYSRNWEDHLKHMEIVFLVLRKHELFANRKKCSFGLAKVEYLGHLI 835

Query: 181 SGRGVEVDPEKIRAVKKWPIPTNVREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKLGAF 240
           S +GVEVDPEKI+A+  WP PTNVRE RGFLGLTGYYR+FV HYG++AAPLTQLLK G F
Sbjct: 836 SNKGVEVDPEKIKAITNWPKPTNVRETRGFLGLTGYYRKFVHHYGTLAAPLTQLLKKGGF 895

Query: 241 KWNEEAQEAFEKLQ 255
           KWN EA++AFEKL+
Sbjct: 896 KWNAEAEQAFEKLK 909

[Close]

BLAST of CSPI04G12280 vs. NCBI nr
Match: TYK22240.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 440.3 bits (1131), Expect = 1.2e-119
Identity = 203/254 (79.92%), Postives = 230/254 (90.55%), Query Frame = 0


Query: 1   MASGIIRPSTSPYSSPVLLVKKKDGSWRFCVDYRSLNNITIPDKFPIPVVEELFDELNGA 60
           + SGIIRPS SPYSSPVLLVKKKDGSWRFCVDYR+LNN+T+PDKFPIPVVEELFDEL GA
Sbjct: 656 LVSGIIRPSASPYSSPVLLVKKKDGSWRFCVDYRALNNVTVPDKFPIPVVEELFDELGGA 715

Query: 61  NLFSKIDLKAGYHQLRMCSQDIEKMAFRTHEGHYEFLVMPFGLTNAPATFQSLMNSIFRS 120
           +LF+KIDLKAGYHQ+RM   DIEK AFRTHEGHYEFLVMPFGLTNAPATFQSLMNSIFR 
Sbjct: 716 SLFTKIDLKAGYHQIRMVDGDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNSIFRP 775

Query: 121 YLRKFVLVFFDDILVYSRNLEEHCQHIELVLEVLREHKLFANRKKCCFAGSRVEYLGHVL 180
           YLRKFVLVFFDDIL+YSRN E+H +H+E+V  VLR+H+LFANRKKC F  ++VEYLGH++
Sbjct: 776 YLRKFVLVFFDDILIYSRNWEDHLKHMEIVFLVLRKHELFANRKKCSFGLAKVEYLGHLI 835

Query: 181 SGRGVEVDPEKIRAVKKWPIPTNVREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKLGAF 240
           S +GVEVDPEKI+A+  WP PTNVRE RGFLGLTGYYR+FV HYG++AAPLTQLLK G F
Sbjct: 836 SNKGVEVDPEKIKAITNWPKPTNVRETRGFLGLTGYYRKFVHHYGTLAAPLTQLLKKGGF 895

Query: 241 KWNEEAQEAFEKLQ 255
           KWN EA++AFEKL+
Sbjct: 896 KWNAEAEQAFEKLK 909

[Close]

BLAST of CSPI04G12280 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 131.7 bits (330), Expect = 8.2e-31
Identity = 58/111 (52.25%), Postives = 78/111 (70.27%), Query Frame = 0


Query: 146 HIELVLEVLREHKLFANRKKCCFAGSRVEYLG--HVLSGRGVEVDPEKIRAVKKWPIPTN 205
           H+ +VL++  +H+ +ANRKKC F   ++ YLG  H++SG GV  DP K+ A+  WP P N
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 206 VREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKLGAFKWNEEAQEAFEKLQ 255
             E+RGFLGLTGYYRRFV++YG I  PLT+LLK  + KW E A  AF+ L+
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAFKALK 113

[Close]

BLAST of CSPI04G12280 vs. TAIR 10
Match: ATMG00850.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 44.7 bits (104), Expect = 1.3e-04
Identity = 19/23 (82.61%), Postives = 21/23 (91.30%), Query Frame = 0


Query: 5  IIRPSTSPYSSPVLLVKKKDGSW 28
          II+PS SPYSSPVLLV+KKDG W
Sbjct: 57 IIQPSISPYSSPVLLVQKKDGGW 79

The following BLAST results are available for this feature:

BLAST of CSPI04G12280 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	5.5e-64	47.67	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	8.8e-62	45.35	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
Q8I7P9	1.5e-58	43.15	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
Q7LHG5	2.2e-57	44.18	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q99315	5.0e-57	43.78	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of CSPI04G12280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SMQ7	5.6e-120	79.92	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3DYS4	5.6e-120	79.92	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3B8Y6	5.6e-120	79.92	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7TXP9	5.6e-120	79.92	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3E1V9	5.6e-120	79.92	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of CSPI04G12280 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0065392.1	1.2e-119	79.92	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0048423.1	1.2e-119	79.92	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK30083.1	1.2e-119	79.92	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0032454.1	1.2e-119	79.92	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYJ99900.1 Ty3/gyp...	[more]
TYK22240.1	1.2e-119	79.92	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of CSPI04G12280 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	8.2e-31	52.25	DNA/RNA polymerases superfamily protein	[more]
ATMG00850.1	1.3e-04	82.61	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 45..180 e-value: 1.3E-80 score: 271.7
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 189..254 e-value: 1.5E-24 score: 87.8
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 2..105 e-value: 1.3E-80 score: 271.7
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 4..253
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 4..253
None	No IPR available	CDD	cd01647	RT_LTR	coord: 4..179 e-value: 9.2895E-97 score: 279.095
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 20..179 e-value: 8.7E-29 score: 100.6
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..180 score: 15.332802
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 3..254

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G12280.1	CSPI04G12280.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098869	cellular oxidant detoxification
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004601	peroxidase activity