CSPI04G12050 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G12050
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Ty3/gypsy retrotransposon protein
Location	Chr4: 10383085 .. 10383795 (+)
RNA-Seq Expression	CSPI04G12050
Synteny	CSPI04G12050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGATGTTCACTGGAGAGAATCCTGAGTTGTGGGTTTTTAGAGCAGAGCCTTTCTTCGACATTAACAATTTGCCAGAGAATGAGAAGGTTAAGGTGGCTGTTGTCAGTTTCAGTCAAGACGAAGTTGATTGGTACCGTTGGAGCAACCACCGGAAAAAGGTCGAATCATGGGAAGATCTAAAGGAGAGAATGATTAAGTTCTTTAGAGACTCCGGACAGAAGAGTCTGAGCGTCAGGTTGATTCGAATAGAACAGGATGAATCGTATAACGACTATGTTAAGAAATTCGTCCAATATTCAGCTCCATTGCCACACATGGCCGAAAGTGTACTCCTAGATGCATTCATGACAGGACTAGAATCGTCCCTTCAAGCCGAAGTCATTAGTAGACACCCTCAATCCTTAGAGGAGTGTATGAAAGAGGCGCAGCTGGTGAATGACAGGAACCTAGCACTGAAATTAGCCAAAGCAGAATGGACAAGTAGTATCACTAAAGGAGGTGACTATTCCAACAAGAATCAAGGCAGTACAGAGAAAAATATGCCCAGAAAGACAGAATTCGCTATGAAACAGATCACCATACCGATCAAGGGAAGATATCCAAAAAGTGAGCCACTAGTGAGAAGACTCTCAGACACCGAATTCCGAGCAAGGTTGGATAAGGGGTTATGTTTCAGATGTAATGAGAAATATTCCCCTGGACATTGA

mRNA sequence

ATGTCGATGTTCACTGGAGAGAATCCTGAGTTGTGGGTTTTTAGAGCAGAGCCTTTCTTCGACATTAACAATTTGCCAGAGAATGAGAAGGTTAAGGTGGCTGTTGTCAGTTTCAGTCAAGACGAAGTTGATTGGTACCGTTGGAGCAACCACCGGAAAAAGGTCGAATCATGGGAAGATCTAAAGGAGAGAATGATTAAGTTCTTTAGAGACTCCGGACAGAAGAGTCTGAGCGTCAGGTTGATTCGAATAGAACAGGATGAATCGTATAACGACTATGTTAAGAAATTCGTCCAATATTCAGCTCCATTGCCACACATGGCCGAAAGTGTACTCCTAGATGCATTCATGACAGGACTAGAATCGTCCCTTCAAGCCGAAGTCATTAGTAGACACCCTCAATCCTTAGAGGAGTGTATGAAAGAGGCGCAGCTGGTGAATGACAGGAACCTAGCACTGAAATTAGCCAAAGCAGAATGGACAAGTAGTATCACTAAAGGAGGTGACTATTCCAACAAGAATCAAGGCAGTACAGAGAAAAATATGCCCAGAAAGACAGAATTCGCTATGAAACAGATCACCATACCGATCAAGGGAAGATATCCAAAAAGTGAGCCACTAGTGAGAAGACTCTCAGACACCGAATTCCGAGCAAGGTTGGATAAGGGGTTATGTTTCAGATGTAATGAGAAATATTCCCCTGGACATTGA

Coding sequence (CDS)

ATGTCGATGTTCACTGGAGAGAATCCTGAGTTGTGGGTTTTTAGAGCAGAGCCTTTCTTCGACATTAACAATTTGCCAGAGAATGAGAAGGTTAAGGTGGCTGTTGTCAGTTTCAGTCAAGACGAAGTTGATTGGTACCGTTGGAGCAACCACCGGAAAAAGGTCGAATCATGGGAAGATCTAAAGGAGAGAATGATTAAGTTCTTTAGAGACTCCGGACAGAAGAGTCTGAGCGTCAGGTTGATTCGAATAGAACAGGATGAATCGTATAACGACTATGTTAAGAAATTCGTCCAATATTCAGCTCCATTGCCACACATGGCCGAAAGTGTACTCCTAGATGCATTCATGACAGGACTAGAATCGTCCCTTCAAGCCGAAGTCATTAGTAGACACCCTCAATCCTTAGAGGAGTGTATGAAAGAGGCGCAGCTGGTGAATGACAGGAACCTAGCACTGAAATTAGCCAAAGCAGAATGGACAAGTAGTATCACTAAAGGAGGTGACTATTCCAACAAGAATCAAGGCAGTACAGAGAAAAATATGCCCAGAAAGACAGAATTCGCTATGAAACAGATCACCATACCGATCAAGGGAAGATATCCAAAAAGTGAGCCACTAGTGAGAAGACTCTCAGACACCGAATTCCGAGCAAGGTTGGATAAGGGGTTATGTTTCAGATGTAATGAGAAATATTCCCCTGGACATTGA

Protein sequence

MSMFTGENPELWVFRAEPFFDINNLPENEKVKVAVVSFSQDEVDWYRWSNHRKKVESWEDLKERMIKFFRDSGQKSLSVRLIRIEQDESYNDYVKKFVQYSAPLPHMAESVLLDAFMTGLESSLQAEVISRHPQSLEECMKEAQLVNDRNLALKLAKAEWTSSITKGGDYSNKNQGSTEKNMPRKTEFAMKQITIPIKGRYPKSEPLVRRLSDTEFRARLDKGLCFRCNEKYSPGH*

Homology

[Close]

BLAST of CSPI04G12050 vs. ExPASy TrEMBL
Match: A0A5D3BTE3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1738G00380 PE=4 SV=1)

HSP 1 Score: 362.5 bits (929), Expect = 1.4e-96
Identity = 181/241 (75.10%), Postives = 201/241 (83.40%), Query Frame = 0


Query: 1   MSMFTGENPELWVFRAEPFFDINNLPENEKVKVAVVSFSQDEVDWYRWSNHRKKVESWED 60
           M MF GENPE WV+RAE FF+INNLPE+EKVKVAVVSF QDEVDWYRWS++RKKVESWED
Sbjct: 210 MPMFLGENPESWVYRAEDFFEINNLPESEKVKVAVVSFGQDEVDWYRWSHNRKKVESWED 269

Query: 61  LKERMIKFFRDSGQKSLSVRLIRIEQDESYNDYVKKFVQYSAPLPHMAESVLLDAFMTGL 120
           LK RM +FFRDSGQKSL  RLIRI+QD SYN+YVKK V YSAPLP++AESVL+DAF+TGL
Sbjct: 270 LKSRMFEFFRDSGQKSLGARLIRIQQDGSYNEYVKKLVTYSAPLPYVAESVLVDAFVTGL 329

Query: 121 ESSLQAEVISRHPQSLEECMKEAQLVNDRNLALKLAK-----AEWTSSITKGGDYSNKNQ 180
           E SLQAEVISRHPQ+LEECM+EAQLVNDRNLALKL K     AEW     +GG    K  
Sbjct: 330 EPSLQAEVISRHPQTLEECMREAQLVNDRNLALKLTKMELGMAEW----DEGGSSKIKKI 389

Query: 181 GSTEKNMPRKTEFAMKQITIPIKGRYPKSEPLVRRLSDTEFRARLDKGLCFRCNEKYSPG 237
           G  EK  PRKT+F MKQITIPIKG + K EP V+RLSD EFRARLD+GLCFRCN+KYSPG
Sbjct: 390 GDAEKPPPRKTDFQMKQITIPIKGNFKKGEPPVKRLSDAEFRARLDRGLCFRCNDKYSPG 446

[Close]

BLAST of CSPI04G12050 vs. ExPASy TrEMBL
Match: A0A5A7T8C0 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold322G00570 PE=4 SV=1)

HSP 1 Score: 362.1 bits (928), Expect = 1.8e-96
Identity = 178/237 (75.11%), Postives = 202/237 (85.23%), Query Frame = 0


Query: 1   MSMFTGENPELWVFRAEPFFDINNLPENEKVKVAVVSFSQDEVDWYRWSNHRKKVESWED 60
           M MF GENP+ WV+RAE FF+INNLPE+EKVKVAVVSF QDEVDWYRWS++RKKVESWED
Sbjct: 89  MPMFLGENPKSWVYRAEHFFEINNLPESEKVKVAVVSFGQDEVDWYRWSHNRKKVESWED 148

Query: 61  LKERMIKFFRDSGQKSLSVRLIRIEQDESYNDYVKKFVQYSAPLPHMAESVLLDAFMTGL 120
           LK RM +FFRDSGQKSL  RLIRI+QD SYN+YVKKFV YSAPLP+MAESVL+DAF+TGL
Sbjct: 149 LKSRMFEFFRDSGQKSLGARLIRIQQDGSYNEYVKKFVTYSAPLPYMAESVLVDAFVTGL 208

Query: 121 ESSLQAEVISRHPQSLEECMKEAQLVNDRNLALKLAKAE-WTSSITKGGDYSNKNQGSTE 180
           E SLQAEVISRHPQ+LE+CM+EAQLVNDRNLALKL+K E   +   +GG    K  G  +
Sbjct: 209 EPSLQAEVISRHPQTLEDCMREAQLVNDRNLALKLSKMELGMTGWEEGGSSKVKKLGDVD 268

Query: 181 KNMPRKTEFAMKQITIPIKGRYPKSEPLVRRLSDTEFRARLDKGLCFRCNEKYSPGH 237
           K  PRKT+F MKQITIPIKG + K EP V+RLSD EFRARLD+GLCFRCN+KYSPGH
Sbjct: 269 KPPPRKTDFQMKQITIPIKGNFKKGEPPVKRLSDAEFRARLDRGLCFRCNDKYSPGH 325

[Close]

BLAST of CSPI04G12050 vs. ExPASy TrEMBL
Match: A0A5A7TGL5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G001310 PE=4 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 1.5e-95
Identity = 180/239 (75.31%), Postives = 199/239 (83.26%), Query Frame = 0


Query: 3   MFTGENPELWVFRAEPFFDINNLPENEKVKVAVVSFSQDEVDWYRWSNHRKKVESWEDLK 62
           MF GENP  WV+RAE FF+INNLPE+EKVKVAVVSF QDEVDWYRWS++RKKVESWEDLK
Sbjct: 199 MFLGENPVSWVYRAEDFFEINNLPESEKVKVAVVSFGQDEVDWYRWSHNRKKVESWEDLK 258

Query: 63  ERMIKFFRDSGQKSLSVRLIRIEQDESYNDYVKKFVQYSAPLPHMAESVLLDAFMTGLES 122
            RM +FFRDSGQKSL  RLIRI+QD SYN+YVKKFV YSAPLP+MAESVL+DAF+T LE 
Sbjct: 259 SRMFEFFRDSGQKSLGARLIRIQQDGSYNEYVKKFVTYSAPLPYMAESVLVDAFVTRLEP 318

Query: 123 SLQAEVISRHPQSLEECMKEAQLVNDRNLALKLAK-----AEWTSSITKGGDYSNKNQGS 182
           SLQAEVISRHPQ+LEECM+EAQLVNDRNLALKL K     AEW     +GG    K  G 
Sbjct: 319 SLQAEVISRHPQTLEECMREAQLVNDRNLALKLTKMELGMAEW----DEGGSSKIKKIGD 378

Query: 183 TEKNMPRKTEFAMKQITIPIKGRYPKSEPLVRRLSDTEFRARLDKGLCFRCNEKYSPGH 237
            EK  PRKT+F MKQITIPIKG + K EP V+RLSD EFRARLD+GLCFRCN+KYSPGH
Sbjct: 379 AEKPPPRKTDFQMKQITIPIKGNFKKGEPPVKRLSDAEFRARLDRGLCFRCNDKYSPGH 433

[Close]

BLAST of CSPI04G12050 vs. ExPASy TrEMBL
Match: A0A5D3BVL1 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001440 PE=4 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 2.0e-95
Identity = 177/237 (74.68%), Postives = 200/237 (84.39%), Query Frame = 0


Query: 1   MSMFTGENPELWVFRAEPFFDINNLPENEKVKVAVVSFSQDEVDWYRWSNHRKKVESWED 60
           M MF GENPE WV+RAE FF+INNLPE+EKVKVAVVSF QDEVDW+RWS++RKKVESWED
Sbjct: 70  MPMFLGENPESWVYRAEHFFEINNLPESEKVKVAVVSFGQDEVDWHRWSHNRKKVESWED 129

Query: 61  LKERMIKFFRDSGQKSLSVRLIRIEQDESYNDYVKKFVQYSAPLPHMAESVLLDAFMTGL 120
           LK RM +FFRDSGQKSL VRLIRI+QDESYN+YVKKF+ YSAPLP M ESVL+DAF+TGL
Sbjct: 130 LKSRMFEFFRDSGQKSLGVRLIRIQQDESYNEYVKKFMTYSAPLPFMVESVLVDAFVTGL 189

Query: 121 ESSLQAEVISRHPQSLEECMKEAQLVNDRNLALKLAKAEW-TSSITKGGDYSNKNQGSTE 180
           E SLQAEVISRHPQ LE+CM+EAQLVNDRNLALKL+K E   +   +GG    K  G  +
Sbjct: 190 EPSLQAEVISRHPQMLEDCMREAQLVNDRNLALKLSKMELRMTEWDEGGSSKVKKLGDAD 249

Query: 181 KNMPRKTEFAMKQITIPIKGRYPKSEPLVRRLSDTEFRARLDKGLCFRCNEKYSPGH 237
           K  PRKT+F MKQITIPIKG + K EP V+RLS  EFRARLD+GLCFRCN+KYSPGH
Sbjct: 250 KPPPRKTDFQMKQITIPIKGNFKKGEPPVKRLSGVEFRARLDRGLCFRCNDKYSPGH 306

[Close]

BLAST of CSPI04G12050 vs. ExPASy TrEMBL
Match: A0A5A7UM77 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold80G002210 PE=4 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 9.9e-95
Identity = 176/237 (74.26%), Postives = 199/237 (83.97%), Query Frame = 0


Query: 1   MSMFTGENPELWVFRAEPFFDINNLPENEKVKVAVVSFSQDEVDWYRWSNHRKKVESWED 60
           M MF GENPE WV+RAE FF+INNL E+EKVKVAVVSF QDEVDWYRWS++RKKVESWED
Sbjct: 89  MPMFLGENPESWVYRAEHFFEINNLSESEKVKVAVVSFGQDEVDWYRWSHNRKKVESWED 148

Query: 61  LKERMIKFFRDSGQKSLSVRLIRIEQDESYNDYVKKFVQYSAPLPHMAESVLLDAFMTGL 120
           LK RM +FFRDSGQKSL  RLIRI+Q+ SYN+YVKKFV YSAPLP+MAESVL+DAF+TGL
Sbjct: 149 LKSRMFEFFRDSGQKSLGARLIRIQQEGSYNEYVKKFVTYSAPLPYMAESVLVDAFVTGL 208

Query: 121 ESSLQAEVISRHPQSLEECMKEAQLVNDRNLALKLAKAE-WTSSITKGGDYSNKNQGSTE 180
           E SLQAEVISRHPQ+LE+CM+EAQLVNDRN ALKL+K E   +    GG    K  G  +
Sbjct: 209 EPSLQAEVISRHPQTLEDCMREAQLVNDRNFALKLSKMELGMTEWEVGGSSKVKKLGDVD 268

Query: 181 KNMPRKTEFAMKQITIPIKGRYPKSEPLVRRLSDTEFRARLDKGLCFRCNEKYSPGH 237
           K  PRKT+F MKQITIPIKG + K EP V+RLSD EFRARLD+GLCFRCN+KYSPGH
Sbjct: 269 KPPPRKTDFQMKQITIPIKGNFKKGEPPVKRLSDAEFRARLDRGLCFRCNDKYSPGH 325

[Close]

BLAST of CSPI04G12050 vs. NCBI nr
Match: TYK02434.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 362.5 bits (929), Expect = 2.9e-96
Identity = 181/241 (75.10%), Postives = 201/241 (83.40%), Query Frame = 0


Query: 1   MSMFTGENPELWVFRAEPFFDINNLPENEKVKVAVVSFSQDEVDWYRWSNHRKKVESWED 60
           M MF GENPE WV+RAE FF+INNLPE+EKVKVAVVSF QDEVDWYRWS++RKKVESWED
Sbjct: 210 MPMFLGENPESWVYRAEDFFEINNLPESEKVKVAVVSFGQDEVDWYRWSHNRKKVESWED 269

Query: 61  LKERMIKFFRDSGQKSLSVRLIRIEQDESYNDYVKKFVQYSAPLPHMAESVLLDAFMTGL 120
           LK RM +FFRDSGQKSL  RLIRI+QD SYN+YVKK V YSAPLP++AESVL+DAF+TGL
Sbjct: 270 LKSRMFEFFRDSGQKSLGARLIRIQQDGSYNEYVKKLVTYSAPLPYVAESVLVDAFVTGL 329

Query: 121 ESSLQAEVISRHPQSLEECMKEAQLVNDRNLALKLAK-----AEWTSSITKGGDYSNKNQ 180
           E SLQAEVISRHPQ+LEECM+EAQLVNDRNLALKL K     AEW     +GG    K  
Sbjct: 330 EPSLQAEVISRHPQTLEECMREAQLVNDRNLALKLTKMELGMAEW----DEGGSSKIKKI 389

Query: 181 GSTEKNMPRKTEFAMKQITIPIKGRYPKSEPLVRRLSDTEFRARLDKGLCFRCNEKYSPG 237
           G  EK  PRKT+F MKQITIPIKG + K EP V+RLSD EFRARLD+GLCFRCN+KYSPG
Sbjct: 390 GDAEKPPPRKTDFQMKQITIPIKGNFKKGEPPVKRLSDAEFRARLDRGLCFRCNDKYSPG 446

[Close]

BLAST of CSPI04G12050 vs. NCBI nr
Match: KAA0039128.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK26985.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 362.1 bits (928), Expect = 3.7e-96
Identity = 178/237 (75.11%), Postives = 202/237 (85.23%), Query Frame = 0


Query: 1   MSMFTGENPELWVFRAEPFFDINNLPENEKVKVAVVSFSQDEVDWYRWSNHRKKVESWED 60
           M MF GENP+ WV+RAE FF+INNLPE+EKVKVAVVSF QDEVDWYRWS++RKKVESWED
Sbjct: 89  MPMFLGENPKSWVYRAEHFFEINNLPESEKVKVAVVSFGQDEVDWYRWSHNRKKVESWED 148

Query: 61  LKERMIKFFRDSGQKSLSVRLIRIEQDESYNDYVKKFVQYSAPLPHMAESVLLDAFMTGL 120
           LK RM +FFRDSGQKSL  RLIRI+QD SYN+YVKKFV YSAPLP+MAESVL+DAF+TGL
Sbjct: 149 LKSRMFEFFRDSGQKSLGARLIRIQQDGSYNEYVKKFVTYSAPLPYMAESVLVDAFVTGL 208

Query: 121 ESSLQAEVISRHPQSLEECMKEAQLVNDRNLALKLAKAE-WTSSITKGGDYSNKNQGSTE 180
           E SLQAEVISRHPQ+LE+CM+EAQLVNDRNLALKL+K E   +   +GG    K  G  +
Sbjct: 209 EPSLQAEVISRHPQTLEDCMREAQLVNDRNLALKLSKMELGMTGWEEGGSSKVKKLGDVD 268

Query: 181 KNMPRKTEFAMKQITIPIKGRYPKSEPLVRRLSDTEFRARLDKGLCFRCNEKYSPGH 237
           K  PRKT+F MKQITIPIKG + K EP V+RLSD EFRARLD+GLCFRCN+KYSPGH
Sbjct: 269 KPPPRKTDFQMKQITIPIKGNFKKGEPPVKRLSDAEFRARLDRGLCFRCNDKYSPGH 325

[Close]

BLAST of CSPI04G12050 vs. NCBI nr
Match: KAA0041186.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 359.0 bits (920), Expect = 3.2e-95
Identity = 180/239 (75.31%), Postives = 199/239 (83.26%), Query Frame = 0


Query: 3   MFTGENPELWVFRAEPFFDINNLPENEKVKVAVVSFSQDEVDWYRWSNHRKKVESWEDLK 62
           MF GENP  WV+RAE FF+INNLPE+EKVKVAVVSF QDEVDWYRWS++RKKVESWEDLK
Sbjct: 199 MFLGENPVSWVYRAEDFFEINNLPESEKVKVAVVSFGQDEVDWYRWSHNRKKVESWEDLK 258

Query: 63  ERMIKFFRDSGQKSLSVRLIRIEQDESYNDYVKKFVQYSAPLPHMAESVLLDAFMTGLES 122
            RM +FFRDSGQKSL  RLIRI+QD SYN+YVKKFV YSAPLP+MAESVL+DAF+T LE 
Sbjct: 259 SRMFEFFRDSGQKSLGARLIRIQQDGSYNEYVKKFVTYSAPLPYMAESVLVDAFVTRLEP 318

Query: 123 SLQAEVISRHPQSLEECMKEAQLVNDRNLALKLAK-----AEWTSSITKGGDYSNKNQGS 182
           SLQAEVISRHPQ+LEECM+EAQLVNDRNLALKL K     AEW     +GG    K  G 
Sbjct: 319 SLQAEVISRHPQTLEECMREAQLVNDRNLALKLTKMELGMAEW----DEGGSSKIKKIGD 378

Query: 183 TEKNMPRKTEFAMKQITIPIKGRYPKSEPLVRRLSDTEFRARLDKGLCFRCNEKYSPGH 237
            EK  PRKT+F MKQITIPIKG + K EP V+RLSD EFRARLD+GLCFRCN+KYSPGH
Sbjct: 379 AEKPPPRKTDFQMKQITIPIKGNFKKGEPPVKRLSDAEFRARLDRGLCFRCNDKYSPGH 433

[Close]

BLAST of CSPI04G12050 vs. NCBI nr
Match: KAA0051136.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03761.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 358.6 bits (919), Expect = 4.1e-95
Identity = 177/237 (74.68%), Postives = 200/237 (84.39%), Query Frame = 0


Query: 1   MSMFTGENPELWVFRAEPFFDINNLPENEKVKVAVVSFSQDEVDWYRWSNHRKKVESWED 60
           M MF GENPE WV+RAE FF+INNLPE+EKVKVAVVSF QDEVDW+RWS++RKKVESWED
Sbjct: 70  MPMFLGENPESWVYRAEHFFEINNLPESEKVKVAVVSFGQDEVDWHRWSHNRKKVESWED 129

Query: 61  LKERMIKFFRDSGQKSLSVRLIRIEQDESYNDYVKKFVQYSAPLPHMAESVLLDAFMTGL 120
           LK RM +FFRDSGQKSL VRLIRI+QDESYN+YVKKF+ YSAPLP M ESVL+DAF+TGL
Sbjct: 130 LKSRMFEFFRDSGQKSLGVRLIRIQQDESYNEYVKKFMTYSAPLPFMVESVLVDAFVTGL 189

Query: 121 ESSLQAEVISRHPQSLEECMKEAQLVNDRNLALKLAKAEW-TSSITKGGDYSNKNQGSTE 180
           E SLQAEVISRHPQ LE+CM+EAQLVNDRNLALKL+K E   +   +GG    K  G  +
Sbjct: 190 EPSLQAEVISRHPQMLEDCMREAQLVNDRNLALKLSKMELRMTEWDEGGSSKVKKLGDAD 249

Query: 181 KNMPRKTEFAMKQITIPIKGRYPKSEPLVRRLSDTEFRARLDKGLCFRCNEKYSPGH 237
           K  PRKT+F MKQITIPIKG + K EP V+RLS  EFRARLD+GLCFRCN+KYSPGH
Sbjct: 250 KPPPRKTDFQMKQITIPIKGNFKKGEPPVKRLSGVEFRARLDRGLCFRCNDKYSPGH 306

[Close]

BLAST of CSPI04G12050 vs. NCBI nr
Match: XP_031745528.1 (uncharacterized protein LOC116405915 [Cucumis sativus])

HSP 1 Score: 357.1 bits (915), Expect = 1.2e-94
Identity = 176/237 (74.26%), Postives = 199/237 (83.97%), Query Frame = 0


Query: 1   MSMFTGENPELWVFRAEPFFDINNLPENEKVKVAVVSFSQDEVDWYRWSNHRKKVESWED 60
           M MF GENPE WV+RAE FF+INNLPE EKVKVAVVSF QDEVDWYRWS++R+KVESWED
Sbjct: 88  MPMFLGENPESWVYRAEHFFEINNLPETEKVKVAVVSFGQDEVDWYRWSHNRRKVESWED 147

Query: 61  LKERMIKFFRDSGQKSLSVRLIRIEQDESYNDYVKKFVQYSAPLPHMAESVLLDAFMTGL 120
           LKERM  FF+D+GQKSL  RLIRIEQD SYNDYVKKFV YSAPLPHM ESVL DAF+TGL
Sbjct: 148 LKERMFDFFKDTGQKSLVARLIRIEQDGSYNDYVKKFVNYSAPLPHMTESVLRDAFLTGL 207

Query: 121 ESSLQAEVISRHPQSLEECMKEAQLVNDRNLALKLAKAEWTS-SITKGGDYSNKNQGSTE 180
           E +LQAEV+SR+P +LEECM+EAQLVNDRNLAL+ +KAE    +  KG   +NK     E
Sbjct: 208 EPNLQAEVVSRNPLTLEECMREAQLVNDRNLALQWSKAEGGGRNYKKGEGSTNKGPEGGE 267

Query: 181 KNMPRKTEFAMKQITIPIKGRYPKSEPLVRRLSDTEFRARLDKGLCFRCNEKYSPGH 237
           K + RKTEF +KQ+TIPIKG Y KSEP V+RLSD EFRARLDKGLCF+CNE+YSPGH
Sbjct: 268 KGITRKTEFPLKQVTIPIKGNYQKSEPPVKRLSDAEFRARLDKGLCFKCNERYSPGH 324

[Close]

BLAST of CSPI04G12050 vs. TAIR 10
Match: AT3G42723.1 (aminoacyl-tRNA ligases;ATP binding;nucleotide binding )

HSP 1 Score: 47.4 bits (111), Expect = 1.9e-05
Identity = 33/144 (22.92%), Postives = 62/144 (43.06%), Query Frame = 0


Query: 7   ENPELWVFRAEPFFDINNLPENEKVKVAVVSFSQDEVDWYRWSNHRKKVESWEDLKERMI 66
           EN    +   E +F  NN+PE E++++   +   D   W +    +    SW++ K  M 
Sbjct: 269 ENLRRCLSNFENYFGENNIPEQERLQIVYSNLEGDIGQWIKHLWKKNSPTSWKEFKCMMA 328

Query: 67  KFFRDSGQKSLSVRLIRIEQDESYNDYVKKFVQYSAPLPHMAESVLLDAFMTGLESSLQA 126
           +  + + + +       I+Q+ S  +Y ++F         +    L   F+ GL+ SLQ 
Sbjct: 329 RETKTTMKVNHQPHYSGIQQEGSVREYRERFEALCLGSVILPGQGLEALFLQGLQPSLQT 388

Query: 127 EVISRHPQSLEECMKEAQLVNDRN 151
            V    P  + + M  AQ + + N
Sbjct: 389 AVRELKPNGIVQMMDTAQWLEESN 412

The following BLAST results are available for this feature:

BLAST of CSPI04G12050 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI04G12050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BTE3	1.4e-96	75.10	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7T8C0	1.8e-96	75.11	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7TGL5	1.5e-95	75.31	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BVL1	2.0e-95	74.68	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7UM77	9.9e-95	74.26	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of CSPI04G12050 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK02434.1	2.9e-96	75.10	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0039128.1	3.7e-96	75.11	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK26985.1 Ty3/gyp...	[more]
KAA0041186.1	3.2e-95	75.31	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0051136.1	4.1e-95	74.68	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03761.1 Ty3/gyp...	[more]
XP_031745528.1	1.2e-94	74.26	uncharacterized protein LOC116405915 [Cucumis sativus]	[more]

BLAST of CSPI04G12050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G42723.1	1.9e-05	22.92	aminoacyl-tRNA ligases;ATP binding;nucleotide binding	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 32..121 e-value: 2.7E-12 score: 46.8
None	No IPR available	PANTHER	PTHR34482:SF28	OS02G0566300 PROTEIN	coord: 7..236
None	No IPR available	PANTHER	PTHR34482	DNA DAMAGE-INDUCIBLE PROTEIN 1-LIKE	coord: 7..236

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G12050.1	CSPI04G12050.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding