CSPI04G10380 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G10380
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	protein POLYCHOME
Location	Chr4: 8501488 .. 8504676 (+)
RNA-Seq Expression	CSPI04G10380
Synteny	CSPI04G10380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCAAAATTTCGACTTCTCTCAAACCAGCTTCACCTTCTTCCCTCTCATTTTTCATCTCCGCTCCTCACAGATCGCCGCCTCCCACCAATCCACCGCCATTTTTTTTTTGGAATACTCCATTCAAGCCCACTGGAATCTCACGGTATGAATCAATTTCCATCTTCCTTTTCTCCATTTCTCTATTTCTCTTTTCTTTGGACAATGTTTACTGAAATGTAGTTTTTGGCTTTAACTCAAAGATTCTTAGTTCTTGTTACTGTAGATTTGGATTAGGGCTTCTCTTGCTTTCTTCTTCTTTGAAATGTTTGTTTTCTTGCTTCTTCCTTTTGAAGTTCCATAATGTCGGAAGCAAGGGATAGATTGGAGAGGCAAGTGGATTATGCCGAGGTATTTGCTCGTCGGAGGTCGGAAGGTATATTGGACGAGCAAGAAATGGGTTCTAATTTGATAGGTACTCCGATTGCACGCGCCACTACGACCAATACTGCTCAACAAAGACCTACGAATCCCGGCCCTGGTGGAGGTGGTACAAATCTGAGACGTACTTTTGGTTCTCCCATTTCTGGCGGAATTGGGCGTAATAGATTTCTTTATAGAACTCCAGTGTTGAGCCGTGAGAATCCGTCGGCTGGGAGTTCCCGGCGGAGTAGATCTCGGGGTAGGAACAGTGTGTTACCGATTTGGTACCCAAGAACCCCTCTTCGTGACATAACTGCAGTTGTGAGGGTAAATTACTATTTTCCCTCTTACTTTCATATTTTTCTGCTTAGTTTTTCAAGGATTTCTTCTGTTCTGCCTACAAGTTTGTGGATTACTTGGATATTTGATTCATATTGTTTATAGCAAACATGTTCTCATTGTTGCATATGGTCTCTGGTATGTATATACATACGCCAATTCCTACCTAGTAGATATTTGTTCTCCGATGCAGGCTCTTATTTTAATTTACTTCATCTTCGGAGAACCCCATCTTTTGATTTTCTGGTGTAGATGTTGTGATTATTTTTTCTGTTGTTCTGTTGGAAAGCATTTGTTATGATTTGATTTTTGACCGAAAATGTTGTTGCATATGTCTAATATTTTTTTGTGAATCCTTAGATTGGATCACTTTCCTTTTTCTTTAAGTTAATTAATCAATAAATTTTAAGTGTTTTTAAGCTATGTACTACCTACCTGTTTGTCTAAAAAGGAGATTCTTTTGGTTTTGTAATATCCATGCCCAATGATTTCATATGAAACATTAACAGTCTGGATAATGAGAACCTGTCCACCATTAACTAAAGTTAACATAACTCGTCTCCTTTCTTAGATTTTATATTCATTGTTTAATTGGATTCCAATCCGTTTTTAGGCTTCATTTTCACCTGTTATTAGAACTACTTTTTGGTGGGCTCAATATGCTTCGGCTGGTTACTAGGATTCGCTGACTAGGTAGTCCAAATCAACATTTTGGGCGTTTGTCAAGCTGTCATTTGAAAGTCAAATTGCTGATTTTACTAGCCAATTAAAATTTATAATTATGATTGCAGTGATATTAACATCTGTTGTTATCGTGACTTGTGGGGCATGTGTGCTGATTAAGCTTGTGTCGACACTTTTAAATTATCTGACCTTACGTTTCCAATGTATTAAATTAATTAAATTATTTTGTTTGAAAAGTTTCAACGGACGAAAAAATATGTTTTGAGCCAGAATATCAATTTTAATTTTTCAAGCATCTGGATGCATGTATATTAATTGACCTTGAGATTGTTAAGATTACGTAATTTTATTTTAAGTAACTTAATGTAAGGCATTATGCATCACTTTTCTCGGTGAATCATACACTAAATCAAACCATTATGAAGAAAATCTTTGTAATGTCTAAAAATAGAATTTTGATTTTTAAAATATGTGTAAAGTAAATGTGTCTTTTTTTTTGTGCTATCAGTTTTTACCATATATTATATCACGTTATAGTGCATCATGTGAGGCTATGTCACATGTCTGTGTCTTTGTACCCTTCATCTAAATTCTTTGCTACTTTTTTGGTTGATTCGCTGATAATTTTGCTGTCTATGTGAAATATTCCTCTCATCTTTTCACGTCTCTGAGGATTTTATTTGGGAATTGTCTTTTAGAAGTTTTCTTTGAGCTATGTTCTTTCAATAATCAAAGGGAATTCTCTTTAAAGCATTGCTGCGTCTGGGCTCAACTTATTTAAATTTCCATTTCCTGCTTTATCCTGCATGTGGGCATTTGGATATTTTGTTACTGCTCCATTTCATTAAATATCACCTGTGTTTTTCCTAGAAATCTCCTTTCCTAGTTTTTCAATTGAGGCATTTGGAAGGCCATGTGGTTAATTTCTAAGGAATCGTATTCCTTTAATCAGGCAATCGAAAGGACAAGAGCTCGCTTGAGAGAAAACGAAGGCCAAGGAAGTGACAGTAGTCCAGCTCCCTCGGACGAAAGAGCACTAGAGTATAGCGTATCCGTGGCAAGTGATCATCAAGAGCCAATCATTTCTCTGCTCACCCCAAAACCAACCGTAGGAAAAGTTCCAAAGATTCTTCGTGGAATCGCGAATGAGAACACGGTAGGGGCCGAAATTCTGACTCCTCAGAAGAAGCTCTTGAACTCCATAGACAAAGTGGAGAAAGTAGTAATGGAGGAGTTACAGAAATTGAAAAGAACACCAAGTGCCAAGAAAGCAGAGAGGGAGAAAAGGGTTCGCACTTTAATGTCGTTTCGTTGATTCATTTCAACACTGACCAGAATTCTTTTGGCAAATCATCAGAGACTCAACTCCAGAATTTTTAGGATCAATCATCTGCTGATGATTACTTTAGTGGTCAAGAACGGCCGTTGATTAGAGAGGGAGAAAGAGAATGCTCATCGTCTGATGAAATCTCATCTCTTGGAGGACTATTTTGTTAGTTTCCTGTTAAAAAAATGAATCCTTTTCATTTGCATAAACCATCTATAATATGCTTTTAGATGATTAGTAAGGCATTTTTACAAATATGTAGGCTATTCTTGTTGATGTAGGGTCTGCCCATTGTTTGTTTACTACAGATATAGGATAGTTATAAAGCAGGCCTTTTTTGGGCAGTGGAAATGATGTAAATAGAAGTTTTATTCACTCTAGAACTTGACATTTTTGCCTATCAAAATCTTATTAGATGCATATTTTTTTATTGGTTTCT

mRNA sequence

CCCAAAATTTCGACTTCTCTCAAACCAGCTTCACCTTCTTCCCTCTCATTTTTCATCTCCGCTCCTCACAGATCGCCGCCTCCCACCAATCCACCGCCATTTTTTTTTTGGAATACTCCATTCAAGCCCACTGGAATCTCACGTTCCATAATGTCGGAAGCAAGGGATAGATTGGAGAGGCAAGTGGATTATGCCGAGGTATTTGCTCGTCGGAGGTCGGAAGGTATATTGGACGAGCAAGAAATGGGTTCTAATTTGATAGGTACTCCGATTGCACGCGCCACTACGACCAATACTGCTCAACAAAGACCTACGAATCCCGGCCCTGGTGGAGGTGGTACAAATCTGAGACGTACTTTTGGTTCTCCCATTTCTGGCGGAATTGGGCGTAATAGATTTCTTTATAGAACTCCAGTGTTGAGCCGTGAGAATCCGTCGGCTGGGAGTTCCCGGCGGAGTAGATCTCGGGGTAGGAACAGTGTGTTACCGATTTGGTACCCAAGAACCCCTCTTCGTGACATAACTGCAGTTGTGAGGGCAATCGAAAGGACAAGAGCTCGCTTGAGAGAAAACGAAGGCCAAGGAAGTGACAGTAGTCCAGCTCCCTCGGACGAAAGAGCACTAGAGTATAGCGTATCCGTGGCAAGTGATCATCAAGAGCCAATCATTTCTCTGCTCACCCCAAAACCAACCGTAGGAAAAGTTCCAAAGATTCTTCGTGGAATCGCGAATGAGAACACGGTAGGGGCCGAAATTCTGACTCCTCAGAAGAAGCTCTTGAACTCCATAGACAAAGTGGAGAAAGTAGTAATGGAGGAGTTACAGAAATTGAAAAGAACACCAAGTGCCAAGAAAGCAGAGAGGGAGAAAAGGGTTCGCACTTTAATGTCGTTTCGTTGATTCATTTCAACACTGACCAGAATTCTTTTGGCAAATCATCAGAGACTCAACTCCAGAATTTTTAGGATCAATCATCTGCTGATGATTACTTTAGTGGTCAAGAACGGCCGTTGATTAGAGAGGGAGAAAGAGAATGCTCATCGTCTGATGAAATCTCATCTCTTGGAGGACTATTTTGTTAGTTTCCTGTTAAAAAAATGAATCCTTTTCATTTGCATAAACCATCTATAATATGCTTTTAGATGATTAGTAAGGCATTTTTACAAATATGTAGGCTATTCTTGTTGATGTAGGGTCTGCCCATTGTTTGTTTACTACAGATATAGGATAGTTATAAAGCAGGCCTTTTTTGGGCAGTGGAAATGATGTAAATAGAAGTTTTATTCACTCTAGAACTTGACATTTTTGCCTATCAAAATCTTATTAGATGCATATTTTTTTATTGGTTTCT

Coding sequence (CDS)

ATGTCGGAAGCAAGGGATAGATTGGAGAGGCAAGTGGATTATGCCGAGGTATTTGCTCGTCGGAGGTCGGAAGGTATATTGGACGAGCAAGAAATGGGTTCTAATTTGATAGGTACTCCGATTGCACGCGCCACTACGACCAATACTGCTCAACAAAGACCTACGAATCCCGGCCCTGGTGGAGGTGGTACAAATCTGAGACGTACTTTTGGTTCTCCCATTTCTGGCGGAATTGGGCGTAATAGATTTCTTTATAGAACTCCAGTGTTGAGCCGTGAGAATCCGTCGGCTGGGAGTTCCCGGCGGAGTAGATCTCGGGGTAGGAACAGTGTGTTACCGATTTGGTACCCAAGAACCCCTCTTCGTGACATAACTGCAGTTGTGAGGGCAATCGAAAGGACAAGAGCTCGCTTGAGAGAAAACGAAGGCCAAGGAAGTGACAGTAGTCCAGCTCCCTCGGACGAAAGAGCACTAGAGTATAGCGTATCCGTGGCAAGTGATCATCAAGAGCCAATCATTTCTCTGCTCACCCCAAAACCAACCGTAGGAAAAGTTCCAAAGATTCTTCGTGGAATCGCGAATGAGAACACGGTAGGGGCCGAAATTCTGACTCCTCAGAAGAAGCTCTTGAACTCCATAGACAAAGTGGAGAAAGTAGTAATGGAGGAGTTACAGAAATTGAAAAGAACACCAAGTGCCAAGAAAGCAGAGAGGGAGAAAAGGGTTCGCACTTTAATGTCGTTTCGTTGA

Protein sequence

MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTNTAQQRPTNPGPGGGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTPLRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKPTVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREKRVRTLMSFR*

Homology

[Close]

BLAST of CSPI04G10380 vs. ExPASy Swiss-Prot
Match: O48533 (Protein POLYCHOME OS=Arabidopsis thaliana OX=3702 GN=PYM PE=1 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 4.7e-52
Identity = 137/262 (52.29%), Postives = 164/262 (62.60%), Query Frame = 0


Query: 1   MSEARDRLERQVDYAEVFARRRSEGI-LDEQEMGSNLIGTPIARATTTNTAQQRPTNPGP 60
           M EARDR+ERQVDY   F  RRS GI LDE     NL G+P+ R  +  T        G 
Sbjct: 1   MPEARDRIERQVDYPAAFLNRRSHGILLDEPATQHNLFGSPVQRVPSEATGGLGSIGQGS 60

Query: 61  -GGGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPR 120
             G G  +R  FG   +GG  R +  +R+P   REN S G +RR R+R  NSVLP WYPR
Sbjct: 61  MTGRGGLVRGNFGIRRTGGGRRGQIQFRSP-QGRENMSLGVTRRGRARASNSVLPSWYPR 120

Query: 121 TPLRDITAVVRAIERTRARLRENEGQGSD-SSPAPSDERALEYSVSVASDHQEPIISLLT 180
           TPLRDI+AVVRAIER RAR+   EG G D  +P P     L+  V ++  H E   S++T
Sbjct: 121 TPLRDISAVVRAIERRRARM--GEGVGRDIETPTPQQLGVLDSLVPLSGAHLEHDYSMVT 180

Query: 181 PKPTVG----------KVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKL 240
           P P++G          KV +IL  I  ENT   + LTP+KKLLNSIDKVEKVVMEE+QK+
Sbjct: 181 PGPSIGFKRPWPPSTAKVHQILLDITRENTGEEDALTPEKKLLNSIDKVEKVVMEEIQKM 240

Query: 241 KRTPSAKKAEREKRVRTLMSFR 250
           K TPSAK+AEREKRVRTLMS R
Sbjct: 241 KSTPSAKRAEREKRVRTLMSMR 259

[Close]

BLAST of CSPI04G10380 vs. ExPASy Swiss-Prot
Match: Q9M2R1 (Protein GIGAS CELL1 OS=Arabidopsis thaliana OX=3702 GN=GIG1 PE=1 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 7.6e-34
Identity = 116/266 (43.61%), Postives = 143/266 (53.76%), Query Frame = 0


Query: 1   MSEARDRLERQVDYAEVFARRRSEGI-LDEQEMGSNLIGTPIARATTTNTAQQRPTNPGP 60
           M EARDR ER VDY+ +FA RR  GI LDE +   +LI +P+            P     
Sbjct: 1   MPEARDRTERPVDYSTIFANRRRHGILLDEPDSRLSLIESPV-----------NPDIGSI 60

Query: 61  GGGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRT 120
           GG G  +R  F +   G        +R P   REN    ++RR R  G   +LP WYPRT
Sbjct: 61  GGTGGLVRGNFTTWRPGNGRGGHTPFRLP-QGRENMPIVTARRGRGGG---LLPSWYPRT 120

Query: 121 PLRDITAVVRAIERTRARLRENEGQGSDSS-----PAPSDERALEYSVSVASDHQEPIIS 180
           PLRDIT +VRAIER     R   G G D       P       LE  V ++ +H+    S
Sbjct: 121 PLRDITHIVRAIER-----RRGAGTGGDDGRVIEIPTHRQVGVLESPVPLSGEHK---CS 180

Query: 181 LLTPKPTVG----------KVPKILRGIANE-NTVGAEILTPQKKLLNSIDKVEKVVMEE 240
           ++TP P+VG          KV K+L  I  E     A  +TP+KKLLNSIDKVEK+VM E
Sbjct: 181 MVTPGPSVGFKRSCPPSTAKVQKMLLDITKEIAEEEAGFITPEKKLLNSIDKVEKIVMAE 240

Query: 241 LQKLKRTPSAKKAEREKRVRTLMSFR 250
           +QKLK TP AK+ EREKRVRTLM+ R
Sbjct: 241 IQKLKSTPQAKREEREKRVRTLMTMR 243

[Close]

BLAST of CSPI04G10380 vs. ExPASy TrEMBL
Match: A0A0A0KY99 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G152290 PE=4 SV=1)

HSP 1 Score: 470.3 bits (1209), Expect = 5.0e-129
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 0


Query: 1   MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTNTAQQRPTNPGPG 60
           MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTNTAQQRPTNPGPG
Sbjct: 65  MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTNTAQQRPTNPGPG 124

Query: 61  GGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 120
           GGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP
Sbjct: 125 GGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 184

Query: 121 LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP 180
           LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP
Sbjct: 185 LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP 244

Query: 181 TVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 240
           TVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK
Sbjct: 245 TVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 304

Query: 241 RVRTLMSFR 250
           RVRTLMSFR
Sbjct: 305 RVRTLMSFR 313

[Close]

BLAST of CSPI04G10380 vs. ExPASy TrEMBL
Match: A0A5D3BM43 (Protein POLYCHOME OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2510G00330 PE=4 SV=1)

HSP 1 Score: 462.2 bits (1188), Expect = 1.4e-126
Identity = 245/249 (98.39%), Postives = 245/249 (98.39%), Query Frame = 0


Query: 1   MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTNTAQQRPTNPGPG 60
           MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTT  AQQRPTNPGPG
Sbjct: 1   MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTTAAQQRPTNPGPG 60

Query: 61  GGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 120
           GGG NLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP
Sbjct: 61  GGGANLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 120

Query: 121 LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP 180
           LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP
Sbjct: 121 LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP 180

Query: 181 TVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 240
           TVGKVPKILRGIANENTVGAE LTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK
Sbjct: 181 TVGKVPKILRGIANENTVGAETLTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 240

Query: 241 RVRTLMSFR 250
           RVRTLMSFR
Sbjct: 241 RVRTLMSFR 249

[Close]

BLAST of CSPI04G10380 vs. ExPASy TrEMBL
Match: A0A1S3CDA1 (protein POLYCHOME OS=Cucumis melo OX=3656 GN=LOC103499559 PE=4 SV=1)

HSP 1 Score: 462.2 bits (1188), Expect = 1.4e-126
Identity = 245/249 (98.39%), Postives = 245/249 (98.39%), Query Frame = 0


Query: 1   MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTNTAQQRPTNPGPG 60
           MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTT  AQQRPTNPGPG
Sbjct: 1   MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTTAAQQRPTNPGPG 60

Query: 61  GGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 120
           GGG NLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP
Sbjct: 61  GGGANLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 120

Query: 121 LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP 180
           LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP
Sbjct: 121 LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP 180

Query: 181 TVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 240
           TVGKVPKILRGIANENTVGAE LTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK
Sbjct: 181 TVGKVPKILRGIANENTVGAETLTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 240

Query: 241 RVRTLMSFR 250
           RVRTLMSFR
Sbjct: 241 RVRTLMSFR 249

[Close]

BLAST of CSPI04G10380 vs. ExPASy TrEMBL
Match: A0A6J1HRM8 (protein POLYCHOME OS=Cucurbita maxima OX=3661 GN=LOC111466091 PE=4 SV=1)

HSP 1 Score: 394.0 bits (1011), Expect = 4.5e-106
Identity = 215/254 (84.65%), Postives = 231/254 (90.94%), Query Frame = 0


Query: 1   MSEARDRLERQVDYAEVFARRRSE-GILDEQEMGSNLIGTPIARATTTNTAQQRPTNPGP 60
           MSE+RDRLERQVDYAEVFARRRSE GILDEQEM + LIGTPIARATTT TAQQRPTN GP
Sbjct: 1   MSESRDRLERQVDYAEVFARRRSEGGILDEQEMSTTLIGTPIARATTTTTAQQRPTNLGP 60

Query: 61  GGGGTN----LRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIW 120
           GGGG       RR+FGSPISGGIGRNRFLYR+PVLSREN +AGSSRRSRSR R+SVLPIW
Sbjct: 61  GGGGGGGGAIPRRSFGSPISGGIGRNRFLYRSPVLSRENTAAGSSRRSRSRVRHSVLPIW 120

Query: 121 YPRTPLRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISL 180
           YPRTPLRDITAVVRAIERTRARLRENEGQGSD+SPAPSDERALE+S SV+  HQEP +SL
Sbjct: 121 YPRTPLRDITAVVRAIERTRARLRENEGQGSDNSPAPSDERALEFSASVSGGHQEPDVSL 180

Query: 181 LTPKPTVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKK 240
           +TPKPTVGKV KILRGIANEN   +E+LTPQKKLLNSIDKVEKVV EELQKL++TPSAK+
Sbjct: 181 VTPKPTVGKVTKILRGIANENVEESEMLTPQKKLLNSIDKVEKVVREELQKLRKTPSAKR 240

Query: 241 AEREKRVRTLMSFR 250
           AEREKRVRTLMSFR
Sbjct: 241 AEREKRVRTLMSFR 254

[Close]

BLAST of CSPI04G10380 vs. ExPASy TrEMBL
Match: A0A6J1EBD1 (protein POLYCHOME-like OS=Cucurbita moschata OX=3662 GN=LOC111432471 PE=4 SV=1)

HSP 1 Score: 394.0 bits (1011), Expect = 4.5e-106
Identity = 215/253 (84.98%), Postives = 231/253 (91.30%), Query Frame = 0


Query: 1   MSEARDRLERQVDYAEVFARRRSE-GILDEQEMGSNLIGTPIARATTTNTAQQRPTNPGP 60
           MSE+RDRLERQVDYAEVFARRRSE GILDEQEM + LIGTPIARATTT TAQQRPTN GP
Sbjct: 1   MSESRDRLERQVDYAEVFARRRSEGGILDEQEMSTTLIGTPIARATTTTTAQQRPTNLGP 60

Query: 61  GGGGTN---LRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWY 120
           GGGG      RR+FGSPISGGIGRNRFLYR+PVLSREN +AGSSRRSRSR R+SVLPIWY
Sbjct: 61  GGGGGGGAIPRRSFGSPISGGIGRNRFLYRSPVLSRENTAAGSSRRSRSRVRHSVLPIWY 120

Query: 121 PRTPLRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLL 180
           PRTPLRDITAVVRAIERTRARLRENEGQGSD+SPAPSDERALE+S SV+  HQEP +SL+
Sbjct: 121 PRTPLRDITAVVRAIERTRARLRENEGQGSDNSPAPSDERALEFSASVSGGHQEPDVSLV 180

Query: 181 TPKPTVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKA 240
           TPKPTVGKV KILRGIANEN   +E+LTPQKKLLNSIDKVEKVV EELQKL++TPSAK+A
Sbjct: 181 TPKPTVGKVNKILRGIANENVEESEMLTPQKKLLNSIDKVEKVVREELQKLRKTPSAKRA 240

Query: 241 EREKRVRTLMSFR 250
           EREKRVRTLMSFR
Sbjct: 241 EREKRVRTLMSFR 253

[Close]

BLAST of CSPI04G10380 vs. NCBI nr
Match: KGN53824.1 (hypothetical protein Csa_015343 [Cucumis sativus])

HSP 1 Score: 470.3 bits (1209), Expect = 1.0e-128
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 0


Query: 1   MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTNTAQQRPTNPGPG 60
           MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTNTAQQRPTNPGPG
Sbjct: 65  MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTNTAQQRPTNPGPG 124

Query: 61  GGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 120
           GGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP
Sbjct: 125 GGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 184

Query: 121 LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP 180
           LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP
Sbjct: 185 LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP 244

Query: 181 TVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 240
           TVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK
Sbjct: 245 TVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 304

Query: 241 RVRTLMSFR 250
           RVRTLMSFR
Sbjct: 305 RVRTLMSFR 313

[Close]

BLAST of CSPI04G10380 vs. NCBI nr
Match: XP_004150162.1 (protein POLYCHOME [Cucumis sativus])

HSP 1 Score: 470.3 bits (1209), Expect = 1.0e-128
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 0


Query: 1   MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTNTAQQRPTNPGPG 60
           MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTNTAQQRPTNPGPG
Sbjct: 1   MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTNTAQQRPTNPGPG 60

Query: 61  GGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 120
           GGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP
Sbjct: 61  GGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 120

Query: 121 LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP 180
           LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP
Sbjct: 121 LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP 180

Query: 181 TVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 240
           TVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK
Sbjct: 181 TVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 240

Query: 241 RVRTLMSFR 250
           RVRTLMSFR
Sbjct: 241 RVRTLMSFR 249

[Close]

BLAST of CSPI04G10380 vs. NCBI nr
Match: XP_008460799.1 (PREDICTED: protein POLYCHOME [Cucumis melo] >KAA0053198.1 protein POLYCHOME [Cucumis melo var. makuwa] >TYK00145.1 protein POLYCHOME [Cucumis melo var. makuwa])

HSP 1 Score: 462.2 bits (1188), Expect = 2.8e-126
Identity = 245/249 (98.39%), Postives = 245/249 (98.39%), Query Frame = 0


Query: 1   MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTNTAQQRPTNPGPG 60
           MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTT  AQQRPTNPGPG
Sbjct: 1   MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTTAAQQRPTNPGPG 60

Query: 61  GGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 120
           GGG NLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP
Sbjct: 61  GGGANLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 120

Query: 121 LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP 180
           LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP
Sbjct: 121 LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP 180

Query: 181 TVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 240
           TVGKVPKILRGIANENTVGAE LTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK
Sbjct: 181 TVGKVPKILRGIANENTVGAETLTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 240

Query: 241 RVRTLMSFR 250
           RVRTLMSFR
Sbjct: 241 RVRTLMSFR 249

[Close]

BLAST of CSPI04G10380 vs. NCBI nr
Match: XP_038881398.1 (protein POLYCHOME [Benincasa hispida])

HSP 1 Score: 433.0 bits (1112), Expect = 1.8e-117
Identity = 229/249 (91.97%), Postives = 238/249 (95.58%), Query Frame = 0


Query: 1   MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTNTAQQRPTNPGPG 60
           MSEARDRLERQVD+AEVFARRRSEGILDEQEM S+LIGTPIAR TTT TAQQRPTNPGPG
Sbjct: 1   MSEARDRLERQVDHAEVFARRRSEGILDEQEMNSHLIGTPIARPTTTTTAQQRPTNPGPG 60

Query: 61  GGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 120
           GGG NLRR FGSPISGGIGRNRFLYR+PVL+REN +AGSSRR+RSRGRNSVLPIWYPRTP
Sbjct: 61  GGGANLRRAFGSPISGGIGRNRFLYRSPVLNRENTAAGSSRRNRSRGRNSVLPIWYPRTP 120

Query: 121 LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP 180
           LRDITAVVRAIERTRARLRENEGQGSD+SPAPSDERALEY+V VA DHQEP ISL+TPKP
Sbjct: 121 LRDITAVVRAIERTRARLRENEGQGSDNSPAPSDERALEYTVLVAGDHQEPSISLVTPKP 180

Query: 181 TVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 240
           TVGKV KILRGIANENTVGAE LTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK
Sbjct: 181 TVGKVRKILRGIANENTVGAETLTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 240

Query: 241 RVRTLMSFR 250
           RVRTLMSFR
Sbjct: 241 RVRTLMSFR 249

[Close]

BLAST of CSPI04G10380 vs. NCBI nr
Match: XP_022966440.1 (protein POLYCHOME [Cucurbita maxima])

HSP 1 Score: 394.0 bits (1011), Expect = 9.3e-106
Identity = 215/254 (84.65%), Postives = 231/254 (90.94%), Query Frame = 0


Query: 1   MSEARDRLERQVDYAEVFARRRSE-GILDEQEMGSNLIGTPIARATTTNTAQQRPTNPGP 60
           MSE+RDRLERQVDYAEVFARRRSE GILDEQEM + LIGTPIARATTT TAQQRPTN GP
Sbjct: 1   MSESRDRLERQVDYAEVFARRRSEGGILDEQEMSTTLIGTPIARATTTTTAQQRPTNLGP 60

Query: 61  GGGGTN----LRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIW 120
           GGGG       RR+FGSPISGGIGRNRFLYR+PVLSREN +AGSSRRSRSR R+SVLPIW
Sbjct: 61  GGGGGGGGAIPRRSFGSPISGGIGRNRFLYRSPVLSRENTAAGSSRRSRSRVRHSVLPIW 120

Query: 121 YPRTPLRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISL 180
           YPRTPLRDITAVVRAIERTRARLRENEGQGSD+SPAPSDERALE+S SV+  HQEP +SL
Sbjct: 121 YPRTPLRDITAVVRAIERTRARLRENEGQGSDNSPAPSDERALEFSASVSGGHQEPDVSL 180

Query: 181 LTPKPTVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKK 240
           +TPKPTVGKV KILRGIANEN   +E+LTPQKKLLNSIDKVEKVV EELQKL++TPSAK+
Sbjct: 181 VTPKPTVGKVTKILRGIANENVEESEMLTPQKKLLNSIDKVEKVVREELQKLRKTPSAKR 240

Query: 241 AEREKRVRTLMSFR 250
           AEREKRVRTLMSFR
Sbjct: 241 AEREKRVRTLMSFR 254

[Close]

BLAST of CSPI04G10380 vs. TAIR 10
Match: AT2G42260.1 (uv-b-insensitive 4 )

HSP 1 Score: 206.1 bits (523), Expect = 3.4e-53
Identity = 137/262 (52.29%), Postives = 164/262 (62.60%), Query Frame = 0


Query: 1   MSEARDRLERQVDYAEVFARRRSEGI-LDEQEMGSNLIGTPIARATTTNTAQQRPTNPGP 60
           M EARDR+ERQVDY   F  RRS GI LDE     NL G+P+ R  +  T        G 
Sbjct: 1   MPEARDRIERQVDYPAAFLNRRSHGILLDEPATQHNLFGSPVQRVPSEATGGLGSIGQGS 60

Query: 61  -GGGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPR 120
             G G  +R  FG   +GG  R +  +R+P   REN S G +RR R+R  NSVLP WYPR
Sbjct: 61  MTGRGGLVRGNFGIRRTGGGRRGQIQFRSP-QGRENMSLGVTRRGRARASNSVLPSWYPR 120

Query: 121 TPLRDITAVVRAIERTRARLRENEGQGSD-SSPAPSDERALEYSVSVASDHQEPIISLLT 180
           TPLRDI+AVVRAIER RAR+   EG G D  +P P     L+  V ++  H E   S++T
Sbjct: 121 TPLRDISAVVRAIERRRARM--GEGVGRDIETPTPQQLGVLDSLVPLSGAHLEHDYSMVT 180

Query: 181 PKPTVG----------KVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKL 240
           P P++G          KV +IL  I  ENT   + LTP+KKLLNSIDKVEKVVMEE+QK+
Sbjct: 181 PGPSIGFKRPWPPSTAKVHQILLDITRENTGEEDALTPEKKLLNSIDKVEKVVMEEIQKM 240

Query: 241 KRTPSAKKAEREKRVRTLMSFR 250
           K TPSAK+AEREKRVRTLMS R
Sbjct: 241 KSTPSAKRAEREKRVRTLMSMR 259

[Close]

BLAST of CSPI04G10380 vs. TAIR 10
Match: AT3G57860.1 (UV-B-insensitive 4-like )

HSP 1 Score: 145.6 bits (366), Expect = 5.4e-35
Identity = 116/266 (43.61%), Postives = 143/266 (53.76%), Query Frame = 0


Query: 1   MSEARDRLERQVDYAEVFARRRSEGI-LDEQEMGSNLIGTPIARATTTNTAQQRPTNPGP 60
           M EARDR ER VDY+ +FA RR  GI LDE +   +LI +P+            P     
Sbjct: 1   MPEARDRTERPVDYSTIFANRRRHGILLDEPDSRLSLIESPV-----------NPDIGSI 60

Query: 61  GGGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRT 120
           GG G  +R  F +   G        +R P   REN    ++RR R  G   +LP WYPRT
Sbjct: 61  GGTGGLVRGNFTTWRPGNGRGGHTPFRLP-QGRENMPIVTARRGRGGG---LLPSWYPRT 120

Query: 121 PLRDITAVVRAIERTRARLRENEGQGSDSS-----PAPSDERALEYSVSVASDHQEPIIS 180
           PLRDIT +VRAIER     R   G G D       P       LE  V ++ +H+    S
Sbjct: 121 PLRDITHIVRAIER-----RRGAGTGGDDGRVIEIPTHRQVGVLESPVPLSGEHK---CS 180

Query: 181 LLTPKPTVG----------KVPKILRGIANE-NTVGAEILTPQKKLLNSIDKVEKVVMEE 240
           ++TP P+VG          KV K+L  I  E     A  +TP+KKLLNSIDKVEK+VM E
Sbjct: 181 MVTPGPSVGFKRSCPPSTAKVQKMLLDITKEIAEEEAGFITPEKKLLNSIDKVEKIVMAE 240

Query: 241 LQKLKRTPSAKKAEREKRVRTLMSFR 250
           +QKLK TP AK+ EREKRVRTLM+ R
Sbjct: 241 IQKLKSTPQAKREEREKRVRTLMTMR 243

The following BLAST results are available for this feature:

BLAST of CSPI04G10380 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O48533	4.7e-52	52.29	Protein POLYCHOME OS=Arabidopsis thaliana OX=3702 GN=PYM PE=1 SV=1	[more]
Q9M2R1	7.6e-34	43.61	Protein GIGAS CELL1 OS=Arabidopsis thaliana OX=3702 GN=GIG1 PE=1 SV=1	[more]

BLAST of CSPI04G10380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KY99	5.0e-129	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G152290 PE=4 SV=1	[more]
A0A5D3BM43	1.4e-126	98.39	Protein POLYCHOME OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2510G0...	[more]
A0A1S3CDA1	1.4e-126	98.39	protein POLYCHOME OS=Cucumis melo OX=3656 GN=LOC103499559 PE=4 SV=1	[more]
A0A6J1HRM8	4.5e-106	84.65	protein POLYCHOME OS=Cucurbita maxima OX=3661 GN=LOC111466091 PE=4 SV=1	[more]
A0A6J1EBD1	4.5e-106	84.98	protein POLYCHOME-like OS=Cucurbita moschata OX=3662 GN=LOC111432471 PE=4 SV=1	[more]

BLAST of CSPI04G10380 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53824.1	1.0e-128	100.00	hypothetical protein Csa_015343 [Cucumis sativus]	[more]
XP_004150162.1	1.0e-128	100.00	protein POLYCHOME [Cucumis sativus]	[more]
XP_008460799.1	2.8e-126	98.39	PREDICTED: protein POLYCHOME [Cucumis melo] >KAA0053198.1 protein POLYCHOME [Cuc...	[more]
XP_038881398.1	1.8e-117	91.97	protein POLYCHOME [Benincasa hispida]	[more]
XP_022966440.1	9.3e-106	84.65	protein POLYCHOME [Cucurbita maxima]	[more]

BLAST of CSPI04G10380 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42260.1	3.4e-53	52.29	uv-b-insensitive 4	[more]
AT3G57860.1	5.4e-35	43.61	UV-B-insensitive 4-like	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 121..141
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 228..249
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 138..158
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..108
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..73
None	No IPR available	PANTHER	PTHR35119:SF1	PROTEIN POLYCHOME	coord: 1..249
IPR034590	POLYCHOME/GIGAS CELL1	PANTHER	PTHR35119	PROTEIN POLYCHOME	coord: 1..249

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G10380.1	CSPI04G10380.1	mRNA
CSPI04G10380.2	CSPI04G10380.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1904667	negative regulation of ubiquitin protein ligase activity
biological_process	GO:0051783	regulation of nuclear division
cellular_component	GO:0005634	nucleus